akantu-private
1edb8bd9845a
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Authored by richart on Nov 27 2019, 14:06.

Description

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private

Details

Committed

richart

Nov 27 2019, 14:06

Pushed

gitlab-richart

Jul 29 2021, 09:01

Parents

rAKA07b4268eff7a: Updating the doc for external dumpers
rAKAea9f5da46600: adding the meshdatamaterialselector handling

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Event Timeline

richart committed rAKA1edb8bd9845a: Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private (authored by richart).Nov 27 2019, 14:06

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
ea9f5da46600	anciaux	adding the meshdatamaterialselector handling	Nov 7 2019
ee1dff673661	anciaux	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Nov 7 2019
d5e1ffd77387	richart	Correcting bug introduced in rAKAPRIVe3715c23639b	Nov 6 2019
04aac09fe6af	anciaux	adding a feature for node groups	Nov 6 2019
c8da98a363fb	anciaux	add library dependence for aka pybind	Nov 6 2019
81356e7a12a0	anciaux	adding possibilities for the element/node groups	Nov 6 2019
570a09d1673a	richart	Adding more missing files	Nov 6 2019
341680976401	richart	Adding missing file	Nov 6 2019
e238b95239f9	richart	policy CMP0077	Nov 1 2019
a6f878784a5b	richart	Including akantu_iterators as a sub project	Nov 1 2019
146d0aec6280	richart	modify gitignore	Oct 30 2019
fbe055d5bd1a	richart	Add 'third-party/akantu_iterators/' from commit…	Oct 30 2019
1d3b143d927f	richart	cleaning repo to move to sub repo	Oct 30 2019
5c6d9f803c20	richart	Bug fix for cmake > 3.11	Oct 30 2019
1bdda648109d	richart	Minor change to limit the number of cores for the tests	Oct 30 2019
147e1270d175	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Oct 28 2019
7d5788cb11eb	richart	Make akantu compile again on ubuntu xenial	Oct 28 2019
407edeebc0fd	richart	Activating tests	Oct 24 2019
53b225d01a2c	richart	adding linters	Oct 23 2019
5a404e915234	richart	moving ci files	Oct 23 2019
67175e63d6b5	richart	Adding jenkinsfile	Oct 23 2019
1026bc603baf	richart	Add 'test/ci/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'	Oct 23 2019
03e5b87c032b	richart	initial commit	Oct 23 2019
bbbac31366b5	anciaux	fix bug on the group manager python interface	Oct 10 2019
850e6e7cab7d	richart	onElementAdded only for elements of the correct dimension	Oct 4 2019
9ced33b21085	richart	Moving the flipFacet call to the mesh facet creation code	Oct 4 2019
12d6811c677d	richart	minor enhancements	Oct 4 2019
fe9a13297180	richart	adding info to mesh events	Oct 4 2019
cabfaf40d130	richart	Tangent matrix re-computation a bit more clever	Oct 4 2019
6f1602db9de8	anciaux	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Oct 1 2019
52e99b106601	anciaux	dirty hack to allow to dump a numpy array	Sep 27 2019
5ad2b577d899	anciaux	saving the test for large rotations	Sep 27 2019
f4c238d2be5e	anciaux	temporary fix to pass a numpy to be dumped	Sep 27 2019
d1ff1a8538d2	anciaux	adding a adddumpfieldexternal	Sep 27 2019
8b4cbff3c1ea	anciaux	adding the example on finite rotation in dynamics	Sep 24 2019
dec47ae94661	richart	Add 'test/ci/scripts/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'	Sep 24 2019
342ac7beecee	richart	splitting repositories	Sep 24 2019
df23807ae10b	richart	arclinting arclint.py	Sep 24 2019
1f8ceb41cdb1	richart	cleaning usless files	Sep 24 2019
41e7f928e7f3	richart	preparation to split hbm scripts in a different project	Sep 24 2019
9b0b8a6b22b2	richart	preparation to split hbm scripts in a different project	Sep 24 2019
d16bb4b1e67d	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Sep 24 2019
07f320d9a304	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
41d91ae41651	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
4b00ed89f550	richart	bug in the interface	Sep 17 2019
3fdc4ee052a4	richart	Bug fix in exclusiveScan in sequential	Sep 17 2019
8d4effaa2144	richart	cleaning the code	Sep 4 2019
dc616972a49a	richart	Do not compute shape derivatives on all type in onElementsAdded	Aug 27 2019
b3f8b6dd7ebb	richart	linting to make jenkins happy again	Aug 27 2019
2f6c39dd1049	richart	missed the structural shape functions	Aug 27 2019

Changes (532)
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Very Large Commit

This commit is very large. Load each file individually.

		Path
A		.flake8
P		.gitignore Copied to third-party/akantu_iterators/.gitignore
M		CMakeLists.txt
M		Jenkinsfile
M		cmake/AkantuExampleMacros.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuSimulationMacros.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
M		cmake/Modules/FindGMSH.cmake
M		cmake/libakantu/v3/printers.py
M		examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
M		examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
M		examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
M		examples/cohesive_element/cohesive_intrinsic/triangle.geo
M		examples/explicit/explicit_dynamic.cc
M		examples/heat_transfer/heat_transfer_static_2d.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/io/dumper/CMakeLists.txt
M		examples/io/dumper/dumpable_interface.cc
M		examples/io/dumper/dumper_low_level.cc
M		examples/new_material/local_material_damage.cc
M		examples/new_material/local_material_damage.hh
M		examples/new_material/local_material_damage_inline_impl.hh
M		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
P		examples/parallel/CMakeLists.txt Copied to packages/akantu_iterators.cmake
M		examples/python/CMakeLists.txt
A		examples/python/cohesive/CMakeLists.txt
M		examples/python/cohesive/plate.py
M		examples/python/custom-material/CMakeLists.txt
M		examples/python/custom-material/bi-material.py
M		examples/python/custom-material/custom-material.py
A		examples/python/dynamics/CMakeLists.txt
M		examples/python/dynamics/dynamics.py
A		examples/python/eigen_modes/CMakeLists.txt
M		examples/python/eigen_modes/eigen_modes.py
M		examples/python/eigen_modes/image_saver.py
M		examples/python/plate-hole/CMakeLists.txt
D		examples/python/plate-hole/plate-mpi.py
M		examples/python/plate-hole/plate.py
M		examples/python/stiffness_matrix/CMakeLists.txt
M		examples/python/stiffness_matrix/plate.msh
M		examples/python/stiffness_matrix/stiffness_matrix.py
M		extra_packages/extra-materials/src/material_FE2/material_FE2.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
M		extra_packages/extra-materials/src/material_damage/material_brittle_inline_impl.cc
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.cc
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.cc
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
M		extra_packages/extra-materials/src/material_damage/material_vreepeerlings_inline_impl.cc
M		extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
M		extra_packages/igfem/src/element_class_igfem.hh
M		extra_packages/igfem/src/igfem_enrichment.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
M		extra_packages/igfem/src/mesh_igfem_spherical_growing_gel_tmpl.hh
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
M		extra_packages/igfem/test/patch_tests/test_interface_position.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
M		extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.hh
P		packages/akantu_iterators.cmake Copied from examples/parallel/CMakeLists.txt
M		packages/core.cmake
M		packages/mumps.cmake
M		packages/pybind11.cmake
M		python/CMakeLists.txt
A		python/py11_akantu.cc
M		python/py_aka_array.hh
M		python/py_akantu.cc
M		python/py_dumpable.cc
M		python/py_group_manager.cc
M		python/py_material.cc
M		python/py_mesh.cc
M		python/py_model.cc
M		python/py_solid_mechanics_model.cc
M		src/common/aka_array.hh
M		src/common/aka_array_printer.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_bbox.hh
M		src/common/aka_blas_lapack.hh
M		src/common/aka_circular_array.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
D		src/common/aka_compatibilty_with_cpp_standard.hh
M		src/common/aka_csr.hh
M		src/common/aka_element_classes_info_inline_impl.cc
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_grid_dynamic.hh
V		{src/common → third-party/akantu_iterators/include}/aka_iterators.hh
M		src/common/aka_math.cc
M		src/common/aka_math.hh
M		src/common/aka_math_tmpl.hh
M		src/common/aka_memory.cc
M		src/common/aka_memory.hh
M		src/common/aka_random_generator.hh
M		src/common/aka_safe_enum.hh
V		{src/common → third-party/akantu_iterators/include}/aka_static_if.hh
M		src/common/aka_static_memory.cc
M		src/common/aka_typelist.hh
M		src/common/aka_types.hh
M		src/common/aka_visitor.hh
M		src/common/aka_voigthelper.cc
M		src/common/aka_voigthelper.hh
M		src/common/aka_voigthelper_tmpl.hh
M		src/fe_engine/element.hh
M		src/fe_engine/element_class.hh
M		src/fe_engine/element_classes/element_class_hermite_inline_impl.cc
M		src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
M		src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
M		src/fe_engine/element_classes/element_class_triangle_6_inline_impl.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_inline_impl.cc
M		src/fe_engine/fe_engine_template_cohesive.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/fe_engine_template_tmpl_field.hh
M		src/fe_engine/fe_engine_template_tmpl_struct.hh
M		src/fe_engine/gauss_integration_tmpl.hh
M		src/fe_engine/geometrical_element_property.cc
M		src/fe_engine/geometrical_element_property.hh
M		src/fe_engine/integration_point.hh
M		src/fe_engine/integrator.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.cc
M		src/fe_engine/interpolation_element_tmpl.hh
M		src/fe_engine/shape_cohesive.hh
M		src/fe_engine/shape_cohesive_inline_impl.cc
M		src/fe_engine/shape_functions.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/fe_engine/shape_lagrange_base.hh
M		src/fe_engine/shape_lagrange_inline_impl.cc
M		src/fe_engine/shape_structural.cc
M		src/fe_engine/shape_structural.hh
M		src/fe_engine/shape_structural_inline_impl.cc
M		src/geometry/aabb_primitives/aabb_primitive.cc
M		src/geometry/aabb_primitives/aabb_primitive.hh
M		src/geometry/aabb_primitives/line_arc.hh
M		src/geometry/aabb_primitives/tetrahedron.hh
M		src/geometry/aabb_primitives/triangle.hh
M		src/geometry/geom_helper_functions.hh
M		src/geometry/mesh_abstract_intersector.hh
M		src/geometry/mesh_abstract_intersector_tmpl.hh
M		src/geometry/mesh_geom_abstract.hh
M		src/geometry/mesh_geom_common.hh
M		src/geometry/mesh_geom_factory.hh
M		src/geometry/mesh_geom_factory_tmpl.hh
M		src/geometry/mesh_geom_intersector.hh
M		src/geometry/mesh_geom_intersector_tmpl.hh
M		src/geometry/mesh_segment_intersector.hh
M		src/geometry/mesh_sphere_intersector.hh
M		src/geometry/mesh_sphere_intersector_tmpl.hh
M		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable_dummy.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumpable_iohelper.hh
M		src/io/dumper/dumper_compute.hh
M		src/io/dumper/dumper_element_iterator.hh
M		src/io/dumper/dumper_element_partition.hh
M		src/io/dumper/dumper_elemental_field.hh
M		src/io/dumper/dumper_filtered_connectivity.hh
M		src/io/dumper/dumper_internal_material_field.hh
M		src/io/dumper/dumper_iohelper.hh
M		src/io/dumper/dumper_iohelper_paraview.hh
M		src/io/dumper/dumper_material_padders.hh
M		src/io/dumper/dumper_nodal_field.hh
M		src/io/dumper/dumper_padding_helper.hh
M		src/io/dumper/dumper_text.hh
M		src/io/dumper/dumper_type_traits.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io/mesh_io_diana.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh_struct.cc
M		src/io/mesh_io/mesh_io_msh_struct.hh
M		src/io/parser/algebraic_parser.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse_tmpl.hh
M		src/io/parser/input_file_parser.hh
M		src/io/parser/parameter_registry.cc
M		src/io/parser/parameter_registry.hh
M		src/io/parser/parsable.cc
M		src/io/parser/parser.cc
M		src/io/parser/parser.hh
M		src/io/parser/parser_grammar_tmpl.hh
M		src/io/parser/parser_input_files.cc
M		src/io/parser/parser_real.cc
M		src/io/parser/parser_tmpl.hh
M		src/io/parser/parser_types.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_events.hh
M		src/mesh/mesh_filter.hh
M		src/mesh/mesh_global_data_updater.hh
M		src/mesh/mesh_inline_impl.cc
M		src/mesh/mesh_iterators.hh
M		src/mesh/mesh_periodic.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.cc
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
M		src/mesh_utils/cohesive_element_inserter_parallel.cc
M		src/mesh_utils/global_ids_updater.cc
M		src/mesh_utils/global_ids_updater.hh
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
M		src/mesh_utils/mesh_utils_distribution.hh
M		src/mesh_utils/mesh_utils_inline_impl.cc
M		src/mesh_utils/mesh_utils_pbc.cc
M		src/model/common/boundary_condition/boundary_condition.hh
M		src/model/common/boundary_condition/boundary_condition_tmpl.hh
M		src/model/common/dof_manager/dof_manager.cc
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_default.hh
M		src/model/common/dof_manager/dof_manager_default_inline_impl.cc
M		src/model/common/dof_manager/dof_manager_petsc.hh
M		src/model/common/integration_scheme/generalized_trapezoidal.cc
M		src/model/common/integration_scheme/integration_scheme.cc
M		src/model/common/integration_scheme/integration_scheme_1st_order.cc
M		src/model/common/integration_scheme/integration_scheme_1st_order.hh
M		src/model/common/integration_scheme/integration_scheme_2nd_order.cc
M		src/model/common/integration_scheme/integration_scheme_2nd_order.hh
M		src/model/common/integration_scheme/newmark-beta.cc
M		src/model/common/integration_scheme/pseudo_time.cc
M		src/model/common/model_solver.cc
M		src/model/common/model_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver_linear.cc
M		src/model/common/non_linear_solver/non_linear_solver_linear.hh
M		src/model/common/non_linear_solver/non_linear_solver_lumped.cc
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
M		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
M		src/model/common/non_linear_solver/non_linear_solver_petsc.hh
M		src/model/common/non_local_toolbox/base_weight_function_inline_impl.cc
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/solver_callback.hh
M		src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/model_inline_impl.cc
M		src/model/model_options.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
M		src/model/solid_mechanics/materials/random_internal_field.hh
M		src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
M		src/model/solid_mechanics/solid_mechanics_model_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
M		src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
M		src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
M		src/model/structural_mechanics/structural_mechanics_model_boundary.cc
M		src/model/structural_mechanics/structural_mechanics_model_mass.cc
M		src/solver/petsc_wrapper.hh
M		src/solver/solver_petsc.hh
M		src/solver/solver_vector.hh
M		src/solver/solver_vector_default.cc
M		src/solver/solver_vector_default.hh
M		src/solver/solver_vector_default_tmpl.hh
M		src/solver/solver_vector_petsc.hh
M		src/solver/sparse_matrix.cc
M		src/solver/sparse_matrix.hh
M		src/solver/sparse_matrix_aij_inline_impl.cc
M		src/solver/sparse_matrix_inline_impl.cc
M		src/solver/sparse_matrix_petsc.cc
M		src/solver/sparse_matrix_petsc.hh
M		src/solver/sparse_solver.cc
M		src/solver/sparse_solver.hh
M		src/solver/sparse_solver_mumps.cc
M		src/solver/sparse_solver_mumps.hh
M		src/solver/terms_to_assemble.hh
M		src/synchronizer/communication_buffer.hh
M		src/synchronizer/communication_buffer_inline_impl.cc
M		src/synchronizer/communication_descriptor_tmpl.hh
M		src/synchronizer/communication_request.hh
M		src/synchronizer/communication_tag.hh
M		src/synchronizer/communications_tmpl.hh
M		src/synchronizer/communicator_dummy_inline_impl.cc
M		src/synchronizer/communicator_event_handler.hh
M		src/synchronizer/communicator_mpi_inline_impl.cc
M		src/synchronizer/data_accessor.cc
M		src/synchronizer/data_accessor.hh
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/dof_synchronizer_inline_impl.cc
M		src/synchronizer/element_info_per_processor.cc
M		src/synchronizer/element_info_per_processor.hh
M		src/synchronizer/element_info_per_processor_tmpl.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/facet_synchronizer.cc
M		src/synchronizer/grid_synchronizer.cc
M		src/synchronizer/master_element_info_per_processor.cc
M		src/synchronizer/node_info_per_processor.hh
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/synchronizer_registry.cc
M		src/synchronizer/synchronizer_registry.hh
M		src/synchronizer/synchronizer_tmpl.hh
P		test/ci/Dockerfile Copied to third-party/akantu_iterators/test/ci/Dockerfile
A		test/ci/scripts/.arcconfig
A		test/ci/scripts/.arclint
A		test/ci/scripts/COPYING
A		test/ci/scripts/COPYING.lesser
D		test/ci/scripts/CTestResults.xml
P		test/ci/scripts/harbomaster/__init__.py Copied to third-party/akantu_iterators/test/ci/scripts/harbomaster/__init__.py
P		test/ci/scripts/harbomaster/arclint.py Copied to third-party/akantu_iterators/test/ci/scripts/harbomaster/arclint.py
D		test/ci/scripts/harbomaster/ctestresults.py
P		test/ci/scripts/harbomaster/hbm.py Copied to third-party/akantu_iterators/test/ci/scripts/harbomaster/hbm.py
M		test/ci/scripts/harbomaster/results.py
A		test/ci/scripts/harbomaster/testresults.py
P		test/ci/scripts/hbm Copied to third-party/akantu_iterators/test/ci/scripts/hbm
M		test/python_fe/__init__.py
M		test/test_common/test_grid.cc
P		test/test_common/test_iterators.cc Copied to third-party/akantu_iterators/test/test_iterators.cc
M		test/test_common/test_tensors.cc
M		test/test_fe_engine/py_engine/__init__.py
M		test/test_fe_engine/py_engine/py_engine.py
M		test/test_fe_engine/test_fe_engine_gauss_integration.cc
M		test/test_fe_engine/test_fe_engine_precomputation.cc
M		test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_geometry/test_segment_intersection_tetrahedron_4.cc
M		test/test_gtest_main.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_mesh/test_mesh_periodic.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_model/patch_tests/patch_test_linear_anisotropic.cc
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/test_common/test_dof_manager.cc
M		test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
M		test/test_model/test_common/test_model_solver/test_model_solver.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.py
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/CMakeLists.txt
M		test/test_model/test_common/test_non_local_toolbox/my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/plot_neighborhoods.py
M		test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
M		test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/material_elastic.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_linear_elastic_potential_energy.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/py_mazars.py
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
A		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_large_rotation.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
M		test/test_python_interface/CMakeLists.txt
M		test/test_python_interface/test_pybind.py
M		test/test_solver/test_solver_petsc.cc
M		test/test_solver/test_sparse_matrix_product.cc
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/test_communicator.cc
M		test/test_synchronizer/test_data_distribution.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_node_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc
A	(dir)	third-party/akantu_iterators/
A		third-party/akantu_iterators/.arcconfig
A		third-party/akantu_iterators/.arclint
A		third-party/akantu_iterators/.clang-format
A		third-party/akantu_iterators/.clang-tidy
P		third-party/akantu_iterators/.gitignore Copied from .gitignore
A	(dir)	third-party/akantu_iterators/.linters/
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/
A		third-party/akantu_iterators/.linters/clang-format-linter/.arclint
A		third-party/akantu_iterators/.linters/clang-format-linter/.gitignore
A		third-party/akantu_iterators/.linters/clang-format-linter/LICENSE
A		third-party/akantu_iterators/.linters/clang-format-linter/README.md
A		third-party/akantu_iterators/.linters/clang-format-linter/__phutil_library_init__.php
A		third-party/akantu_iterators/.linters/clang-format-linter/__phutil_library_map__.php
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/lint/
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/lint/linter/
A		third-party/akantu_iterators/.linters/clang-format-linter/lint/linter/ClangFormatLinter.php
A		third-party/akantu_iterators/CMakeLists.txt
A		third-party/akantu_iterators/COPYING
A		third-party/akantu_iterators/COPYING.lesser
A		third-party/akantu_iterators/Jenkinsfile
A	(dir)	third-party/akantu_iterators/cmake/
A		third-party/akantu_iterators/cmake/AkantuIteratorsTools.cmake
A		third-party/akantu_iterators/cmake/GTest.cmake
A	(dir)	third-party/akantu_iterators/include/
A		third-party/akantu_iterators/include/aka_compatibilty_with_cpp_standard.hh
V		{third-party/akantu_iterators/include ← src/common}/aka_iterators.hh
V		{third-party/akantu_iterators/include ← src/common}/aka_static_if.hh
A		third-party/akantu_iterators/include/aka_tuple_tools.hh
A	(dir)	third-party/akantu_iterators/test/
A		third-party/akantu_iterators/test/CMakeLists.txt
A	(dir)	third-party/akantu_iterators/test/ci/
A		third-party/akantu_iterators/test/ci/.arcconfig
A		third-party/akantu_iterators/test/ci/.arclint
P		third-party/akantu_iterators/test/ci/Dockerfile Copied from test/ci/Dockerfile
A	(dir)	third-party/akantu_iterators/test/ci/scripts/
A		third-party/akantu_iterators/test/ci/scripts/COPYING
A		third-party/akantu_iterators/test/ci/scripts/COPYING.lesser
A	(dir)	third-party/akantu_iterators/test/ci/scripts/harbomaster/
P		third-party/akantu_iterators/test/ci/scripts/harbomaster/__init__.py Copied from test/ci/scripts/harbomaster/__init__.py
P		third-party/akantu_iterators/test/ci/scripts/harbomaster/arclint.py Copied from test/ci/scripts/harbomaster/arclint.py
P		third-party/akantu_iterators/test/ci/scripts/harbomaster/hbm.py Copied from test/ci/scripts/harbomaster/hbm.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/results.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/testresults.py
P		third-party/akantu_iterators/test/ci/scripts/hbm Copied from test/ci/scripts/hbm
P		third-party/akantu_iterators/test/test_iterators.cc Copied from test/test_common/test_iterators.cc
A		third-party/cmake/akantu_iterators.cmake
M		third-party/cmake/gtest.cmake