Diffusion akantu 1fcb02cd66f4

35-implementation-of…
1fcb02cd66f4
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Authored by lucchetta on Jan 24 2022, 10:46.

Description

Merge remote-tracking branch 'origin/master' into features/35-implementation-of-finite-rotation-structural-elements

Details

Committed

lucchetta

Jan 24 2022, 10:46

Pushed

gitlab-richart

Jan 24 2022, 10:55

Parents

rAKA21b0f09a883d: correct the aka_types.hh anf delete the angle_tool scripts
rAKAea422d3afcc1: Merge branch 'features/mesh-periodic-info-in-python' into 'master'

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Event Timeline

lucchetta committed rAKA1fcb02cd66f4: Merge remote-tracking branch 'origin/master' into features/35-implementation-of… (authored by lucchetta).Jan 24 2022, 10:46

Merged Changes

Commit	Author	Details	Committed
ea422d3afcc1	tdroch	Merge branch 'features/mesh-periodic-info-in-python' into 'master'	Jan 21 2022
28ddb633daa4	Nicolas Richart	Merge branch 'master' into features/mesh-periodic-info-in-python	Jan 20 2022
06016ce80fae	Nicolas Richart	Adding PeriodicSlaves and removing method that returns a unordered_multimap	Jan 20 2022
4e311a5e5310	Nicolas Richart	Merge branch 'master' into features/mesh-periodic-info-in-python	Jan 20 2022
2a21aeb28190	richart	Merge branch 'bugfixes/python_package_test' into 'master'	Jan 19 2022
3d9e8d2ee369	richart	Correcting the tests for the python package	Jan 19 2022
b9f6bc187ae3	Nicolas Richart	Remove `except tags` in the configuration steps	Jan 17 2022
fbdc2ac1ae19	richart	Merge branch 'bugfixes/docker-image' into 'master'	Jan 15 2022
96aea35d9bf2	Nicolas Richart	Changed debian:testing to debian:bullseye and corrected coverage	Jan 15 2022
9c40e0686a82	richart	Merge branch 'bugfixes/cmake_regex_error' into 'master'	Jan 15 2022
faa3ae1123b2	anciaux	Merge branch 'master' into bugfixes/cmake_regex_error	Jan 14 2022
cb44d0f7690c	tdroch	Merge branch 'bugfixes/36-pretty-print-of-akantu-array' into 'master'	Jan 14 2022
e8261daf649e	anciaux	change apt-get to apt hoping to have the key problem fixed	Jan 14 2022
b58c882ac2a1	anciaux	Some cmake version complains about an illegal character	Jan 13 2022
2610f04da5bc	Nicolas Richart	Debugging warning linter	Jan 12 2022
1bf1286f15f4	Nicolas Richart	Updating pterry printers and adding missing regexp for Arrays	Jan 11 2022
dc73cc98c872	richart	Merge branch 'features/moving-pypi-package-in-main-akantu' into 'master'	Dec 23 2021
4d4db01864a7	richart	This makes the CI build the python wheel - on master it pushes the wheel to the…	Dec 23 2021
7ff89e9b9c50	richart	Bug fix	Nov 26 2021
16af306e34b6	richart	Adding missing interface for periodic information	Nov 23 2021

Changes (139)
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This commit is very large. Load each file individually.

		Path
M		.editorconfig
M		.gitignore
A	(dir)	.gitlab-ci.d/
A		.gitlab-ci.d/code-quality.yaml
A		.gitlab-ci.d/images.yaml
A		.gitlab-ci.d/templates.yaml
M		.gitlab-ci.yml
A		.pypirc
M		CMakeLists.txt
A		MANIFEST.in
D		README
A		README.md
M		VERSION
M		cmake/AkantuConfig.cmake.in
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuInstall.cmake
A		cmake/AkantuNeedPybind11.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakeVersionGenerator.cmake
D		cmake/Modules/FindCppArray.cmake
M		cmake/Modules/FindGMSH.cmake
D		cmake/Modules/FindIOHelper.cmake
M		cmake/Modules/FindMumps.cmake
D		cmake/Modules/FindNumpy.cmake
M		cmake/Modules/FindScaLAPACK.cmake
M		cmake/akantu_install_environement.csh.in
M		cmake/akantu_install_environement.sh.in
A		cmake/akantu_version.py.in
M		cmake/libakantu/v3/printers.py
A		dev-requirements.txt
M		examples/python/structural_mechanics/CMakeLists.txt
M		extra_packages/igfem/src/solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
M		packages/akantu_iterators.cmake
M		packages/blas.cmake
M		packages/dumpers.cmake
M		packages/google-test.cmake
M		packages/iohelper.cmake
M		packages/mumps.cmake
M		packages/numpy.cmake
M		packages/pybind11.cmake
A		packages/python.cmake
M		packages/python_interface.cmake
D		packages/python_interpreter.cmake
D		packages/pythonlibs.cmake
M		packages/scalapack.cmake
M		packages/scotch.cmake
A		pyproject.toml
M		python/CMakeLists.txt
M		python/py_akantu.cc
M		python/py_mesh.cc
A		setup.cfg
A		setup.py
M		src/CMakeLists.txt
M		src/common/aka_config.hh.in
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumper_field.hh
M		src/mesh/element_group.cc
M		src/mesh/group_manager_inline_impl.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh_inline_impl.hh
M		src/mesh/node_group.cc
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_petsc.cc
M		src/model/contact_mechanics/contact_mechanics_model.cc
M		src/model/contact_mechanics/contact_mechanics_model.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/model.cc
M		src/model/model_couplers/coupler_solid_cohesive_contact.cc
M		src/model/model_couplers/coupler_solid_contact.cc
M		src/model/model_couplers/coupler_solid_contact.hh
M		src/model/model_couplers/coupler_solid_contact_tmpl.hh
M		src/model/model_couplers/coupler_solid_phasefield.cc
M		src/model/phase_field/phase_field_model.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/structural_mechanics/structural_mechanics_model.cc
A	(dir)	test/ci/debian:bullseye/
V	(dir)	test/ci/{debian:bullseye/.openmpi/ ← debian:testing/.openmpi}
V		test/ci/{debian:bullseye ← debian:testing}/.openmpi/mca-params.conf
V		test/ci/{debian:bullseye ← debian:testing}/Dockerfile
D		test/ci/debian:testing
V	(dir)	test/ci/{debian:testing/.openmpi/ → debian:bullseye/.openmpi}
V		test/ci/{debian:testing → debian:bullseye}/.openmpi/mca-params.conf
V		test/ci/{debian:testing → debian:bullseye}/Dockerfile
M		test/ci/includes_for_ci/aka_config.hh
A		test/ci/make-wheels.sh
D		test/ci/manylinux
D		test/ci/manylinux/Dockerfile
V		test/ci/{manylinux → manylinux:2010_x86_64}/compilers.yaml
A	(dir)	test/ci/manylinux:2010_x86_64/
A		test/ci/manylinux:2010_x86_64/Dockerfile
A		test/ci/manylinux:2010_x86_64/Toolchain.cmake
V		test/ci/{manylinux:2010_x86_64 ← manylinux}/compilers.yaml
A		test/ci/manylinux:2010_x86_64/install-pip.sh
A		test/ci/manylinux:2010_x86_64/packages.yaml
A		test/ci/manylinux:2010_x86_64/repos.yaml
A		test/ci/manylinux:2010_x86_64/spack.yaml
M		test/ci/scripts/codequality/issue_generator_warnings.py
M		test/ci/ubuntu:lts/Dockerfile
M		test/test_gtest_main.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_scotch.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron_displacement.cc
M		test/test_solver/test_sparse_matrix_profile_parallel.cc
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
D		third-party/MUMPS_4.10.0.patch
D		third-party/MUMPS_4.10.0_make.inc.cmake
D		third-party/MUMPS_4.9.2_make.inc.cmake
D		third-party/MUMPS_5.0.0.patch
M		third-party/akantu_iterators/CMakeLists.txt
D		third-party/blas_3.5.0_make.inc.cmake
D		third-party/cmake/mumps.cmake
D		third-party/cmake/scalapack.cmake
D		third-party/cmake/scotch.cmake
M		third-party/iohelper/src/CMakeLists.txt
M		third-party/pybind11.cmake.in
D		third-party/scalapack_2.0.2.patch
D		third-party/scotch_5.1.12b.patch
D		third-party/scotch_5.1.12b_make.inc.cmake
A		versioneer.py