joss-2021
4cc61439b7b6
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Authored by Nicolas Richart <networms@gmail.ch> on Oct 29 2021, 18:02.

Description

Merge remote-tracking branch 'origin/master' into features/joss-2021

Details

Committed

Nicolas Richart <networms@gmail.ch>

Oct 29 2021, 18:02

Pushed

gitlab-richart

Oct 29 2021, 18:02

Parents

rAKAd1ce1b5244e9: [joss] added ref to plastic contact paper
rAKAadf760250693: Merge branch 'features/28-getelementinradius-const-element-element-in-feengine…

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Nicolas Richart <networms@gmail.ch> committed rAKA4cc61439b7b6: Merge remote-tracking branch 'origin/master' into features/joss-2021 (authored by Nicolas Richart <networms@gmail.ch>).Oct 29 2021, 18:02

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
adf760250693	richart	Merge branch 'features/28-getelementinradius-const-element-element-in-feengine…	Oct 22 2021
260e9988d3c2	richart	Merge branch 'features/python-doc' into 'master'	Oct 21 2021
d5c9b97925e8	tdroch	Merge branch 'master' of gitlab.com:akantu/akantu into features/python-doc	Oct 21 2021
4495c438977d	richart	Merge branch 'bugfixes/coverage-not-run-properly-anymore' into 'master'	Oct 21 2021
3cf041b128f7	richart	Correction of the coverage reporting	Oct 21 2021
bf256d3a02cd	tdroch	Merge branch 'master' of gitlab.com:akantu/akantu into features/python-doc	Oct 20 2021
4150bff40824	tdroch	remove dependencies from python doc	Oct 20 2021
9b728e0b714b	tdroch	Merge branch 'features/changelog' into 'master'	Oct 11 2021
444bd1903ad5	richart	Adding a changelog	Oct 9 2021
dae6329da495	richart	Merge branch 'bugfixes/broken_dumper_nodes' into 'master'	Oct 6 2021
6c4aec2225d4	anciaux	bug fix for the dumper field: now possible again to dump a mesh	Oct 6 2021
cf25e59e090b	richart	Debuged getElementInradius and added a test	Oct 1 2021
5632dcaaf3f8	anciaux	Merge branch 'features/another-take-at-ci-stuffs' into 'master'	Sep 21 2021
6c2f4744d6e8	tdroch	Merge branch 'bugfixes/27-bug-in-the-python-interface' into 'master'	Sep 21 2021
d213b95f146f	Nicolas Richart	Linting the cc files too	Sep 17 2021
be9997e57239	richart	Some more errors introduced/revealed by the linter	Sep 16 2021
93ae1ca0ac57	richart	Header error discovered by formatting	Sep 16 2021
e5cfe0ce664a	Nicolas Richart	clang-format everything	Sep 15 2021
08360b35de3b	Nicolas Richart	Format error	Sep 14 2021
f5197fee192c	Nicolas Richart	More massaging to get usable output	Sep 14 2021
ed35ac1721c8	Nicolas Richart	Cleaning a bit the result	Sep 14 2021
b018d7c15872	Nicolas Richart	Typo in the ci	Sep 14 2021
aadc6a132455	Nicolas Richart	Gitlab does not support multiple codequality reports	Sep 14 2021
8e686256858f	Nicolas Richart	more bug fixes	Sep 14 2021
59a03c18b8bf	Nicolas Richart	Regexp defined in the wrong scope	Sep 14 2021
99639d185e3d	Nicolas Richart	Linting is breaking the linter	Sep 13 2021
a052594ac2ef	Nicolas Richart	Linting the linter	Sep 13 2021
69db73d26030	Nicolas Richart	Bug fix in warning handling after refactorization	Sep 13 2021
21708b2c0783	Nicolas Richart	bug fix when no issue in a file	Sep 13 2021
a52805834289	Nicolas Richart	forcing wrong python interpreter	Sep 12 2021
b08c7ab70f23	Nicolas Richart	Changing exit code in case valgrind detects something	Sep 12 2021
21accc50c466	Nicolas Richart	missing return	Sep 12 2021
d383b77fd300	Nicolas Richart	second try with pip install click	Sep 12 2021
81a031780308	Nicolas Richart	typo in clang tools	Sep 12 2021
ebde8cc7b2be	Nicolas Richart	adding valgrind	Sep 12 2021
6b2562eabe10	Nicolas Richart	Pip not installed	Sep 12 2021
920e010e8be4	Nicolas Richart	Adding warning parser to docker images	Sep 12 2021
2244fa6a4217	richart	Correcting include in py_material.cc	Sep 11 2021
f78a305ef28e	Nicolas Richart	Adding dependencies for ci script	Sep 11 2021
75f945a28db5	Nicolas Richart	More factorizing	Sep 10 2021
4f2cafa3b1ed	Nicolas Richart	Factorizing the code and adding clang-format	Sep 10 2021
2563451bab1d	tdroch	Doc for python interface	Sep 8 2021
3292dfaa76b5	richart	linting the linting script	Aug 28 2021
769d77bbbfd6	richart	typo + trying differnt ccache congif	Aug 28 2021
1553fa893fda	richart	Limiting the lint to the modified files to accelerate the ci	Aug 28 2021
25743e8c285f	richart	clang-tidy --fix: to auto fix errors	Aug 27 2021
610d127fe8a9	richart	Modify to use clang-tidy with exclusion instead of run-clang-tidy	Aug 27 2021
c57bff0a0c23	richart	bug fix in coverage	Aug 24 2021
d030e68d6d0a	richart	Problem was not where I thought	Aug 24 2021
c918e9ae898f	richart	Another try at debug	Aug 24 2021

Changes (872)
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Very Large Commit

This commit is very large. Load each file individually.

		Path
M		.codeclimate.yml
M		.gitignore
M		.gitlab-ci.yml
A		CHANGELOG.md
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/akantu_test_driver.sh
M		doc/dev-doc/manual/getting_started.rst
M		examples/boundary_conditions/predefined_bc/predefined_bc.cc
M		examples/boundary_conditions/python_user_defined_bc/python_user_defined_bc.cc
M		examples/boundary_conditions/user_defined_bc/user_defined_bc.cc
M		examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
M		examples/cohesive_element/cohesive_extrinsic_ig_tg/cohesive_extrinsic_ig_tg.cc
M		examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
M		examples/contact_mechanics/cohesive_contact_explicit_dynamic.cc
M		examples/contact_mechanics/contact_explicit_dynamic.cc
M		examples/contact_mechanics/contact_explicit_static.cc
M		examples/embedded/embedded.cc
M		examples/explicit/explicit_dynamic.cc
M		examples/heat_transfer/heat_transfer_dynamics_2d.cc
M		examples/heat_transfer/heat_transfer_dynamics_3d.cc
M		examples/heat_transfer/heat_transfer_static_2d.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/io/dumper/dumpable_interface.cc
M		examples/io/dumper/dumper_low_level.cc
M		examples/io/dumper/locomotive_tools.cc
M		examples/io/dumper/locomotive_tools.hh
M		examples/io/parser/example_parser.cc
M		examples/new_material/local_material_damage.cc
M		examples/new_material/local_material_damage.hh
M		examples/new_material/local_material_damage_inline_impl.hh
M		examples/new_material/new_local_material.cc
M		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
M		examples/parallel/parallel_2d.cc
M		examples/phase_field/phase_field_notch.cc
M		examples/static/static.cc
M		examples/structural_mechanics/bernoulli_beam_2_example.cc
M		extra_packages/extra-materials/src/material_FE2/material_FE2.cc
M		extra_packages/extra-materials/src/material_FE2/material_FE2.hh
M		extra_packages/extra-materials/src/material_damage/material_brittle.hh
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
M		extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
M		extra_packages/extra-materials/src/material_plastic/material_viscoplastic.hh
M		extra_packages/extra-materials/src/material_viscoelastic/material_stiffness_proportional.hh
M		extra_packages/igfem/src/dumper_igfem_connectivity.hh
M		extra_packages/igfem/src/dumper_igfem_element_iterator.hh
M		extra_packages/igfem/src/dumper_igfem_element_partition.hh
M		extra_packages/igfem/src/dumper_igfem_elemental_field.hh
M		extra_packages/igfem/src/dumper_igfem_generic_elemental_field.hh
M		extra_packages/igfem/src/dumper_igfem_material_internal_field.hh
M		extra_packages/igfem/src/dumper_igfem_quadrature_points_field.hh
M		extra_packages/igfem/src/element_class_igfem.hh
M		extra_packages/igfem/src/fe_engine_template_tmpl_igfem.hh
M		extra_packages/igfem/src/igfem_helper.hh
M		extra_packages/igfem/src/integrator_gauss_igfem.hh
M		extra_packages/igfem/src/integrator_gauss_igfem_inline_impl.hh
M		extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage.hh
M		extra_packages/igfem/src/non_local_manager_igfem.cc
M		extra_packages/igfem/src/shape_igfem.cc
M		extra_packages/igfem/src/shape_igfem.hh
M		extra_packages/igfem/src/shape_igfem_inline_impl.hh
M		extra_packages/igfem/src/solid_mechanics_model_igfem.cc
M		extra_packages/igfem/src/solid_mechanics_model_igfem.hh
M		extra_packages/igfem/src/solid_mechanics_model_igfem_inline_impl.hh
M		extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
M		extra_packages/traction-at-split-node-contact/src/boundary_conditions/inclined_flat_dirichlet.hh
M		extra_packages/traction-at-split-node-contact/src/boundary_conditions/spring_bc.hh
M		extra_packages/traction-at-split-node-contact/src/common/manual_restart.cc
M		extra_packages/traction-at-split-node-contact/src/common/manual_restart.hh
M		extra_packages/traction-at-split-node-contact/src/common/parameter_reader.cc
M		extra_packages/traction-at-split-node-contact/src/common/parameter_reader.hh
M		extra_packages/traction-at-split-node-contact/src/common/synchronized_array.hh
M		extra_packages/traction-at-split-node-contact/src/common/synchronized_array_inline_impl.hh
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.hh
M		extra_packages/traction-at-split-node-contact/src/functions/node_filter.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact_inline_impl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/tasn_contact.hh
M		python/py_aka_array.hh
M		python/py_aka_common.cc
M		python/py_aka_common.hh
M		python/py_aka_error.cc
M		python/py_aka_error.hh
M		python/py_akantu.cc
M		python/py_akantu.hh
M		python/py_akantu_pybind11_compatibility.hh
M		python/py_boundary_conditions.cc
M		python/py_boundary_conditions.hh
M		python/py_contact_mechanics_model.cc
M		python/py_contact_mechanics_model.hh
M		python/py_dumpable.cc
M		python/py_dumpable.hh
M		python/py_fe_engine.cc
M		python/py_fe_engine.hh
M		python/py_fragment_manager.cc
M		python/py_fragment_manager.hh
M		python/py_group_manager.hh
M		python/py_heat_transfer_model.cc
M		python/py_heat_transfer_model.hh
M		python/py_material.cc
M		python/py_material.hh
M		python/py_material_selector.cc
M		python/py_material_selector.hh
M		python/py_mesh.cc
M		python/py_mesh.hh
M		python/py_model.cc
M		python/py_model.hh
M		python/py_model_couplers.cc
M		python/py_model_couplers.hh
M		python/py_parser.cc
M		python/py_parser.hh
M		python/py_phase_field_model.cc
M		python/py_phase_field_model.hh
M		python/py_solid_mechanics_model.cc
M		python/py_solid_mechanics_model.hh
M		python/py_solid_mechanics_model_cohesive.cc
M		python/py_solid_mechanics_model_cohesive.hh
M		python/py_solver.cc
M		python/py_solver.hh
M		python/py_structural_mechanics_model.cc
M		python/py_structural_mechanics_model.hh
M		src/common/aka_array.cc
M		src/common/aka_array.hh
M		src/common/aka_array_printer.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_bbox.hh
M		src/common/aka_blas_lapack.hh
M		src/common/aka_circular_array.hh
M		src/common/aka_circular_array_inline_impl.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.hh
M		src/common/aka_csr.hh
M		src/common/aka_element_classes_info_inline_impl.hh
M		src/common/aka_enum_macros.hh
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_event_handler_manager.hh
M		src/common/aka_extern.cc
M		src/common/aka_factory.hh
M		src/common/aka_fwd.hh
M		src/common/aka_grid_dynamic.hh
M		src/common/aka_math.cc
M		src/common/aka_math.hh
M		src/common/aka_math_tmpl.hh
M		src/common/aka_random_generator.hh
M		src/common/aka_safe_enum.hh
M		src/common/aka_types.hh
M		src/common/aka_voigthelper.cc
M		src/common/aka_voigthelper.hh
M		src/common/aka_voigthelper_tmpl.hh
M		src/common/aka_warning.hh
M		src/common/aka_warning_restore.hh
M		src/fe_engine/cohesive_element.hh
M		src/fe_engine/element.hh
M		src/fe_engine/element_class.hh
M		src/fe_engine/element_class_helper.hh
M		src/fe_engine/element_class_structural.hh
M		src/fe_engine/element_class_tmpl.hh
M		src/fe_engine/element_classes/element_class_bernoulli_beam_inline_impl.hh
M		src/fe_engine/element_classes/element_class_hermite_inline_impl.hh
M		src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.hh
M		src/fe_engine/element_classes/element_class_hexahedron_8_inline_impl.hh
M		src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.hh
M		src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.hh
M		src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.hh
M		src/fe_engine/element_classes/element_class_point_1_inline_impl.hh
M		src/fe_engine/element_classes/element_class_quadrangle_4_inline_impl.hh
M		src/fe_engine/element_classes/element_class_quadrangle_8_inline_impl.hh
M		src/fe_engine/element_classes/element_class_segment_2_inline_impl.hh
M		src/fe_engine/element_classes/element_class_segment_3_inline_impl.hh
M		src/fe_engine/element_classes/element_class_tetrahedron_10_inline_impl.hh
M		src/fe_engine/element_classes/element_class_tetrahedron_4_inline_impl.hh
M		src/fe_engine/element_classes/element_class_triangle_3_inline_impl.hh
M		src/fe_engine/element_classes/element_class_triangle_6_inline_impl.hh
M		src/fe_engine/element_type_conversion.hh
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_inline_impl.hh
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/fe_engine_template_cohesive.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/fe_engine_template_tmpl_field.hh
M		src/fe_engine/fe_engine_template_tmpl_struct.hh
M		src/fe_engine/gauss_integration.cc
M		src/fe_engine/gauss_integration_tmpl.hh
M		src/fe_engine/geometrical_element_property.cc
M		src/fe_engine/geometrical_element_property.hh
M		src/fe_engine/integration_point.hh
M		src/fe_engine/integrator.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.hh
M		src/fe_engine/interpolation_element_tmpl.hh
M		src/fe_engine/shape_cohesive.hh
M		src/fe_engine/shape_cohesive_inline_impl.hh
M		src/fe_engine/shape_functions.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_functions_inline_impl.hh
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/fe_engine/shape_lagrange_base.hh
M		src/fe_engine/shape_lagrange_base_inline_impl.hh
M		src/fe_engine/shape_lagrange_inline_impl.hh
M		src/fe_engine/shape_structural.cc
M		src/fe_engine/shape_structural.hh
M		src/fe_engine/shape_structural_inline_impl.hh
M		src/geometry/aabb_primitives/aabb_primitive.cc
M		src/geometry/aabb_primitives/aabb_primitive.hh
M		src/geometry/aabb_primitives/line_arc.hh
M		src/geometry/aabb_primitives/tetrahedron.hh
M		src/geometry/aabb_primitives/triangle.hh
M		src/geometry/geom_helper_functions.hh
M		src/geometry/mesh_abstract_intersector.hh
M		src/geometry/mesh_abstract_intersector_tmpl.hh
M		src/geometry/mesh_geom_abstract.hh
M		src/geometry/mesh_geom_common.hh
M		src/geometry/mesh_geom_factory.hh
M		src/geometry/mesh_geom_factory_tmpl.hh
M		src/geometry/mesh_geom_intersector.hh
M		src/geometry/mesh_geom_intersector_tmpl.hh
M		src/geometry/mesh_segment_intersector.hh
M		src/geometry/mesh_segment_intersector_tmpl.hh
M		src/geometry/mesh_sphere_intersector.hh
M		src/geometry/mesh_sphere_intersector_tmpl.hh
M		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable.hh
M		src/io/dumper/dumpable_dummy.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumpable_iohelper.hh
M		src/io/dumper/dumper_compute.hh
P		src/io/dumper/dumper_element_iterator.hh Copied from src/io/dumper/dumper_filtered_connectivity.hh
M		src/io/dumper/dumper_element_partition.hh
M		src/io/dumper/dumper_elemental_field.hh
M		src/io/dumper/dumper_field.hh
P		src/io/dumper/dumper_filtered_connectivity.hh Copied to src/io/dumper/dumper_element_iterator.hh
M		src/io/dumper/dumper_generic_elemental_field.hh
M		src/io/dumper/dumper_generic_elemental_field_tmpl.hh
M		src/io/dumper/dumper_homogenizing_field.hh
M		src/io/dumper/dumper_internal_material_field.hh
M		src/io/dumper/dumper_iohelper.cc
M		src/io/dumper/dumper_iohelper.hh
M		src/io/dumper/dumper_iohelper_paraview.cc
M		src/io/dumper/dumper_iohelper_paraview.hh
M		src/io/dumper/dumper_material_padders.hh
M		src/io/dumper/dumper_nodal_field.hh
M		src/io/dumper/dumper_padding_helper.hh
M		src/io/dumper/dumper_quadrature_point_iterator.hh
M		src/io/dumper/dumper_text.cc
M		src/io/dumper/dumper_text.hh
M		src/io/dumper/dumper_type_traits.hh
M		src/io/dumper/dumper_variable.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_diana.cc
M		src/io/mesh_io/mesh_io_diana.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/mesh_io/mesh_io_msh_struct.cc
M		src/io/mesh_io/mesh_io_msh_struct.hh
M		src/io/parser/algebraic_parser.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse.hh
M		src/io/parser/cppargparse/cppargparse_tmpl.hh
M		src/io/parser/input_file_parser.hh
M		src/io/parser/parameter_registry.cc
M		src/io/parser/parameter_registry.hh
M		src/io/parser/parameter_registry_tmpl.hh
M		src/io/parser/parsable.cc
M		src/io/parser/parsable.hh
M		src/io/parser/parser.cc
M		src/io/parser/parser.hh
M		src/io/parser/parser_grammar_tmpl.hh
M		src/io/parser/parser_input_files.cc
M		src/io/parser/parser_random.cc
M		src/io/parser/parser_real.cc
M		src/io/parser/parser_tmpl.hh
M		src/io/parser/parser_types.cc
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_group_inline_impl.hh
M		src/mesh/element_type_map.cc
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_filter.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/group_manager_inline_impl.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_data.cc
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_events.hh
M		src/mesh/mesh_filter.hh
M		src/mesh/mesh_global_data_updater.hh
M		src/mesh/mesh_inline_impl.hh
M		src/mesh/mesh_iterators.hh
M		src/mesh/mesh_periodic.cc
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.hh
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
M		src/mesh_utils/cohesive_element_inserter_helper.cc
M		src/mesh_utils/cohesive_element_inserter_helper.hh
M		src/mesh_utils/cohesive_element_inserter_inline_impl.hh
M		src/mesh_utils/cohesive_element_inserter_parallel.cc
M		src/mesh_utils/global_ids_updater.cc
M		src/mesh_utils/global_ids_updater.hh
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
M		src/mesh_utils/mesh_utils_distribution.cc
M		src/mesh_utils/mesh_utils_distribution.hh
M		src/mesh_utils/mesh_utils_inline_impl.hh
M		src/mesh_utils/mesh_utils_pbc.cc
M		src/model/common/boundary_condition/boundary_condition.hh
M		src/model/common/boundary_condition/boundary_condition_functor.hh
M		src/model/common/boundary_condition/boundary_condition_functor_inline_impl.hh
M		src/model/common/boundary_condition/boundary_condition_tmpl.hh
M		src/model/common/dof_manager/dof_manager.cc
M		src/model/common/dof_manager/dof_manager.hh
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_default.hh
M		src/model/common/dof_manager/dof_manager_default_inline_impl.hh
M		src/model/common/dof_manager/dof_manager_inline_impl.hh
M		src/model/common/dof_manager/dof_manager_petsc.cc
M		src/model/common/dof_manager/dof_manager_petsc.hh
M		src/model/common/integration_scheme/generalized_trapezoidal.cc
M		src/model/common/integration_scheme/generalized_trapezoidal.hh
M		src/model/common/integration_scheme/integration_scheme.cc
M		src/model/common/integration_scheme/integration_scheme.hh
M		src/model/common/integration_scheme/integration_scheme_1st_order.cc
M		src/model/common/integration_scheme/integration_scheme_1st_order.hh
M		src/model/common/integration_scheme/integration_scheme_2nd_order.cc
M		src/model/common/integration_scheme/integration_scheme_2nd_order.hh
M		src/model/common/integration_scheme/newmark-beta.cc
M		src/model/common/integration_scheme/newmark-beta.hh
M		src/model/common/integration_scheme/pseudo_time.cc
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M		src/model/common/model_solver.cc
M		src/model/common/model_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver.cc
M		src/model/common/non_linear_solver/non_linear_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver_default.hh
M		src/model/common/non_linear_solver/non_linear_solver_linear.cc
M		src/model/common/non_linear_solver/non_linear_solver_linear.hh
M		src/model/common/non_linear_solver/non_linear_solver_lumped.cc
M		src/model/common/non_linear_solver/non_linear_solver_lumped.hh
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
M		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
M		src/model/common/non_linear_solver/non_linear_solver_petsc.hh
M		src/model/common/non_local_toolbox/base_weight_function.hh
M		src/model/common/non_local_toolbox/base_weight_function_inline_impl.hh
M		src/model/common/non_local_toolbox/neighborhood_base.cc
M		src/model/common/non_local_toolbox/neighborhood_base.hh
M		src/model/common/non_local_toolbox/neighborhood_base_inline_impl.hh
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.hh
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_manager.hh
M		src/model/common/non_local_toolbox/non_local_manager_callback.hh
M		src/model/common/non_local_toolbox/non_local_manager_inline_impl.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
M		src/model/common/solver_callback.cc
M		src/model/common/solver_callback.hh
M		src/model/common/time_step_solvers/time_step_solver.cc
M		src/model/common/time_step_solvers/time_step_solver.hh
M		src/model/common/time_step_solvers/time_step_solver_default.cc
M		src/model/common/time_step_solvers/time_step_solver_default.hh
M		src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
M		src/model/contact_mechanics/contact_detector.cc
M		src/model/contact_mechanics/contact_detector.hh
M		src/model/contact_mechanics/contact_detector_inline_impl.cc
M		src/model/contact_mechanics/contact_element.hh
M		src/model/contact_mechanics/contact_mechanics_model.cc
M		src/model/contact_mechanics/contact_mechanics_model.hh
M		src/model/contact_mechanics/geometry_utils.cc
M		src/model/contact_mechanics/geometry_utils.hh
M		src/model/contact_mechanics/geometry_utils_inline_impl.cc
M		src/model/contact_mechanics/resolution.cc
M		src/model/contact_mechanics/resolution.hh
M		src/model/contact_mechanics/resolution_utils.cc
M		src/model/contact_mechanics/resolution_utils.hh
M		src/model/contact_mechanics/resolutions/resolution_penalty.cc
M		src/model/contact_mechanics/resolutions/resolution_penalty.hh
M		src/model/contact_mechanics/resolutions/resolution_penalty_quadratic.cc
M		src/model/contact_mechanics/resolutions/resolution_penalty_quadratic.hh
M		src/model/contact_mechanics/surface_selector.cc
M		src/model/contact_mechanics/surface_selector.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
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M		src/model/model.cc
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M		src/model/model_couplers/cohesive_contact_solvercallback.cc
M		src/model/model_couplers/cohesive_contact_solvercallback.hh
M		src/model/model_couplers/coupler_solid_cohesive_contact.cc
M		src/model/model_couplers/coupler_solid_cohesive_contact.hh
M		src/model/model_couplers/coupler_solid_contact.cc
M		src/model/model_couplers/coupler_solid_contact.hh
M		src/model/model_couplers/coupler_solid_contact_tmpl.hh
M		src/model/model_couplers/coupler_solid_phasefield.cc
M		src/model/model_couplers/coupler_solid_phasefield.hh
M		src/model/model_inline_impl.hh
M		src/model/model_options.hh
M		src/model/phase_field/phase_field_model.cc
M		src/model/phase_field/phase_field_model.hh
M		src/model/phase_field/phase_field_model_inline_impl.cc
M		src/model/phase_field/phasefield.cc
M		src/model/phase_field/phasefield.hh
M		src/model/phase_field/phasefield_inline_impl.cc
M		src/model/phase_field/phasefield_selector.hh
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M		src/model/phase_field/phasefields/phasefield_exponential.cc
M		src/model/phase_field/phasefields/phasefield_exponential.hh
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.hh
M		src/model/solid_mechanics/material_selector.hh
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M		src/model/solid_mechanics/materials/internal_field.hh
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M		src/model/solid_mechanics/materials/material_core_includes.hh
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_non_local.hh
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M		src/model/solid_mechanics/materials/material_damage/material_marigo.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.cc
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M		src/model/solid_mechanics/materials/material_damage/material_mazars.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars.hh
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.hh
M		src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.hh
M		src/model/solid_mechanics/materials/material_damage/material_phasefield.cc
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M		src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars.cc
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M		src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_non_local.cc
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M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_inline_impl.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.hh
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
M		src/model/solid_mechanics/materials/material_embedded/material_embedded_includes.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
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M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
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M		src/model/solid_mechanics/materials/material_non_local.hh
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M		src/model/solid_mechanics/materials/material_non_local_tmpl.hh
M		src/model/solid_mechanics/materials/material_plastic/material_drucker_prager.cc
M		src/model/solid_mechanics/materials/material_plastic/material_drucker_prager.hh
M		src/model/solid_mechanics/materials/material_plastic/material_drucker_prager_inline_impl.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
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M		src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
M		src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.hh
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
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M		src/model/solid_mechanics/materials/random_internal_field.hh
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M		src/model/solid_mechanics/materials/weight_functions/damaged_weight_function.hh
M		src/model/solid_mechanics/materials/weight_functions/damaged_weight_function_inline_impl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function.hh
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M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
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M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
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M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
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M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.hh
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M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
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M		src/model/solid_mechanics/solid_mechanics_model_material.cc
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M		src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_2.hh
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M		src/solver/sparse_matrix_petsc.hh
M		src/solver/sparse_solver.cc
M		src/solver/sparse_solver.hh
M		src/solver/sparse_solver_inline_impl.hh
M		src/solver/sparse_solver_mumps.cc
M		src/solver/sparse_solver_mumps.hh
M		src/solver/terms_to_assemble.hh
M		src/synchronizer/communication_buffer.hh
M		src/synchronizer/communication_buffer_inline_impl.hh
M		src/synchronizer/communication_descriptor.hh
M		src/synchronizer/communication_descriptor_tmpl.hh
M		src/synchronizer/communication_request.hh
M		src/synchronizer/communication_tag.hh
M		src/synchronizer/communications.hh
M		src/synchronizer/communications_tmpl.hh
M		src/synchronizer/communicator.cc
M		src/synchronizer/communicator.hh
M		src/synchronizer/communicator_dummy_inline_impl.hh
M		src/synchronizer/communicator_event_handler.hh
M		src/synchronizer/communicator_inline_impl.hh
M		src/synchronizer/communicator_mpi_inline_impl.hh
M		src/synchronizer/data_accessor.cc
M		src/synchronizer/data_accessor.hh
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/dof_synchronizer_inline_impl.hh
M		src/synchronizer/element_info_per_processor.cc
M		src/synchronizer/element_info_per_processor.hh
M		src/synchronizer/element_info_per_processor_tmpl.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/element_synchronizer.hh
M		src/synchronizer/facet_synchronizer.cc
M		src/synchronizer/facet_synchronizer.hh
M		src/synchronizer/facet_synchronizer_inline_impl.hh
M		src/synchronizer/grid_synchronizer.cc
M		src/synchronizer/grid_synchronizer.hh
M		src/synchronizer/grid_synchronizer_tmpl.hh
M		src/synchronizer/master_element_info_per_processor.cc
M		src/synchronizer/mpi_communicator_data.hh
M		src/synchronizer/node_info_per_processor.cc
M		src/synchronizer/node_info_per_processor.hh
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
M		src/synchronizer/node_synchronizer_inline_impl.hh
M		src/synchronizer/periodic_node_synchronizer.cc
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/slave_element_info_per_processor.cc
M		src/synchronizer/synchronizer.cc
M		src/synchronizer/synchronizer.hh
M		src/synchronizer/synchronizer_impl.hh
M		src/synchronizer/synchronizer_impl_tmpl.hh
M		src/synchronizer/synchronizer_registry.cc
M		src/synchronizer/synchronizer_registry.hh
M		src/synchronizer/synchronizer_tmpl.hh
M		test/ci/debian:testing/Dockerfile
M		test/ci/includes_for_ci/aka_config.hh
M		test/ci/includes_for_ci/aka_element_classes_info.hh
M		test/ci/includes_for_ci/aka_fortran_mangling.hh
M		test/ci/includes_for_ci/material_list.hh
A		test/ci/ompi_init.supp
D		test/ci/scripts/clang-tidy2code-quality.py
A	(dir)	test/ci/scripts/codequality/
A		test/ci/scripts/codequality/__init__.py
A		test/ci/scripts/codequality/issue_generator.py
A		test/ci/scripts/codequality/issue_generator_clang_format.py
A		test/ci/scripts/codequality/issue_generator_clang_tidy.py
A		test/ci/scripts/codequality/issue_generator_clang_tool.py
A		test/ci/scripts/codequality/issue_generator_warnings.py
A		test/ci/scripts/cq
M		test/ci/ubuntu:lts/Dockerfile
M		test/test_common/test_array.cc
M		test/test_common/test_csr.cc
M		test/test_common/test_grid.cc
M		test/test_common/test_tensors.cc
M		test/test_common/test_types.cc
M		test/test_common/test_voigt_helper.cc
M		test/test_fe_engine/CMakeLists.txt
A		test/test_fe_engine/_hexahedron_20.csv
A		test/test_fe_engine/_hexahedron_8.csv
A		test/test_fe_engine/_pentahedron_15.csv
A		test/test_fe_engine/_pentahedron_6.csv
A		test/test_fe_engine/_quadrangle_4.csv
A		test/test_fe_engine/_quadrangle_8.csv
A		test/test_fe_engine/_segment_2.csv
A		test/test_fe_engine/_segment_3.csv
A		test/test_fe_engine/_tetrahedron_10.csv
A		test/test_fe_engine/_tetrahedron_4.csv
A		test/test_fe_engine/_triangle_3.csv
A		test/test_fe_engine/_triangle_6.csv
M		test/test_fe_engine/test_facet_element_mapping.cc
M		test/test_fe_engine/test_fe_engine_fixture.hh
M		test/test_fe_engine/test_fe_engine_gauss_integration.cc
A		test/test_fe_engine/test_fe_engine_inradius.cc
M		test/test_fe_engine/test_fe_engine_precomputation.cc
M		test/test_fe_engine/test_fe_engine_precomputation_bernoulli_2.cc
M		test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
M		test/test_fe_engine/test_fe_engine_precomputation_structural.cc
M		test/test_fe_engine/test_fe_engine_structural_fixture.hh
M		test/test_fe_engine/test_gradient.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_fe_engine/test_interpolate.cc
M		test/test_fe_engine/test_interpolate_bernoulli_beam_2.cc
M		test/test_fe_engine/test_inverse_map.cc
M		test/test_fe_engine/test_mesh_boundary.cc
M		test/test_fe_engine/test_mesh_data.cc
M		test/test_geometry/test_geometry_intersection.cc
M		test/test_geometry/test_geometry_predicates.cc
M		test/test_geometry/test_segment_intersection_tetrahedron_4.cc
M		test/test_geometry/test_segment_intersection_triangle_3.cc
M		test/test_gtest_main.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_io/test_parser/test_parser.cc
M		test/test_mesh/test_mesh_periodic.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_linear.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_quadratic.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_linear.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_quadratic.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_15.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_6.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_4.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_8.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron_10.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_3.cc
M		test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_6.cc
M		test/test_mesh_utils/test_mesh_io/test_mesh_io_msh.cc
M		test/test_mesh_utils/test_mesh_io/test_mesh_io_msh_physical_names.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_scotch.cc
M		test/test_mesh_utils/test_pbc_tweak/test_pbc_tweak.cc
M		test/test_mesh_utils/test_purify_mesh.cc
M		test/test_mesh_utils/test_segment_nodetype/test_segment_nodetype.cc
M		test/test_model/patch_tests/patch_test_linear_anisotropic_explicit.cc
M		test/test_model/patch_tests/patch_test_linear_anisotropic_implicit.cc
M		test/test_model/patch_tests/patch_test_linear_elastic_explicit.cc
M		test/test_model/patch_tests/patch_test_linear_elastic_implicit.cc
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_explicit.cc
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_implicit.cc
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_static.cc
M		test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.hh
M		test/test_model/patch_tests/test_lumped_mass.cc
M		test/test_model/test_common/test_dof_manager.cc
M		test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
M		test/test_model/test_common/test_model_solver/test_model_solver.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
M		test/test_model/test_common/test_non_local_toolbox/test_material.cc
M		test/test_model/test_common/test_non_local_toolbox/test_material.hh
M		test/test_model/test_common/test_non_local_toolbox/test_material_damage.cc
M		test/test_model/test_common/test_non_local_toolbox/test_material_damage.hh
M		test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
M		test/test_model/test_common/test_non_local_toolbox/test_non_local_neighborhood_base.cc
M		test/test_model/test_common/test_non_local_toolbox/test_pair_computation.cc
M		test/test_model/test_common/test_non_local_toolbox/test_remove_damage_weight_function.cc
M		test/test_model/test_common/test_non_local_toolbox/test_weight_computation.cc
M		test/test_model/test_contact_mechanics_model/test_coupler/test_contact_coupling.cc
M		test/test_model/test_contact_mechanics_model/test_coupler/test_coupled_stiffness.cc
M		test/test_model/test_contact_mechanics_model/test_detector/test_detection.cc
M		test/test_model/test_contact_mechanics_model/test_detector/test_detection_fixture.hh
M		test/test_model/test_contact_mechanics_model/test_explicit_dynamic.cc
M		test/test_model/test_contact_mechanics_model/test_explicit_friction.cc
M		test/test_model/test_contact_mechanics_model/test_resolution/test_explicit_resolution.cc
M		test/test_model/test_contact_mechanics_model/test_resolution/test_resolution.cc
M		test/test_model/test_contact_mechanics_model/test_selector/test_selection.cc
M		test/test_model/test_contact_mechanics_model/test_selector/test_selection_fixture.hh
M		test/test_model/test_phase_field_model/test_multi_material.cc
M		test/test_model/test_phase_field_model/test_phase_solid_coupling.cc
M		test/test_model/test_phase_field_model/test_phase_solid_explicit.cc
M		test/test_model/test_phase_field_model/test_phasefield_selector.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_1d_element/test_cohesive_1d_element.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/test_cohesive_buildfragments.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_fatigue.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_quadrangle.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_tetrahedron.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_quadrangle.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron_fragmentation.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic_impl/test_cohesive_intrinsic_impl.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_facet_stress_synchronizer/test_cohesive_facet_stress_synchronizer.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_buildfragments/test_cohesive_parallel_buildfragments.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron_displacement.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic_IG_TG/test_cohesive_parallel_extrinsic_IG_TG.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_insertion/test_cohesive_parallel_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_insertion/test_cohesive_parallel_intrinsic_implicit_insertion.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_intrinsic/test_cohesive_parallel_intrinsic.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_intrinsic/test_cohesive_parallel_intrinsic_tetrahedron.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_kinetic_energy.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_linear_elastic_potential_energy.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_quasistatic.cc
M		test/test_model/test_solid_mechanics_model/test_material_selector.cc
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.cc
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.hh
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage_inline_impl.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_deformation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_interpolate_stress.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_damage_non_local.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_non_local.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_orthotropic.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation_tension.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_multi_material_elastic.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_large_rotation.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_2.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_discrete_kirchhoff_triangle_18.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_kirchhoff_shell_patch_test_4_5_5.cc
M		test/test_python_interface/test_common.cc
M		test/test_solver/test_petsc_matrix_apply_boundary.cc
M		test/test_solver/test_petsc_matrix_diagonal.cc
M		test/test_solver/test_petsc_matrix_profile.cc
M		test/test_solver/test_petsc_matrix_profile_parallel.cc
M		test/test_solver/test_solver_petsc.cc
M		test/test_solver/test_sparse_matrix_assemble.cc
M		test/test_solver/test_sparse_matrix_product.cc
M		test/test_solver/test_sparse_matrix_profile.cc
M		test/test_solver/test_sparse_matrix_profile_parallel.cc
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/test_communicator.cc
M		test/test_synchronizer/test_data_accessor.hh
M		test/test_synchronizer/test_data_distribution.cc
M		test/test_synchronizer/test_dof_data_accessor.hh
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer_check_neighbors.cc
M		test/test_synchronizer/test_grid_tools.hh
M		test/test_synchronizer/test_node_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc
M		test/test_synchronizer/test_synchronizers_fixture.hh
M		third-party/iohelper/src/dumper_lammps.hh