Merge branch 'master' into features/pybind11
604abe561a78
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Authored by richart on Jun 15 2019, 18:24.

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Merge branch 'master' into features/pybind11

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Committed

richart

Jun 15 2019, 18:24

Pushed

gitlab-richart

Jul 29 2021, 09:01

Parents

rAKA1d9772fd8e9c: Bug fix in the createElementGroups function
rAKA1eeb3a40716a: renaming a file

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richart committed rAKA604abe561a78: Merge branch 'master' into features/pybind11 (authored by richart).Jun 15 2019, 18:24

Merged Changes

Commit	Author	Details	Committed
1d9772fd8e9c	richart	Bug fix in the createElementGroups function	Jun 13 2019
39deb14038fd	richart	Version change	Jun 13 2019
0c6888ff380d	richart	Fixing bugs in parallel:	Jun 12 2019
c4f2158a9313	richart	Make it compatible with the new versions of google-test	Jun 12 2019
f433098ce4ca	richart	Compiling with clang with -fsanitize=memory	Jun 12 2019
ece172541773	richart	Bug fix in cohesive elements	Jun 5 2019
d615f3390f78	richart	Repairing some swig things	Jun 5 2019
00ca1e91f39a	richart	Merge branch 'master' into features/petsc	Jun 5 2019
e31046f5809d	richart	Minor bug fixes	Jun 5 2019
dd534854983b	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Jun 4 2019
02f245d81e99	richart	Bug fix in the MSH reader version 4	Jun 2 2019
c9e67b83dadf	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	May 31 2019
ce7807ee8dd8	anciaux/richart	correct the construction of the element filter with ek_regular	May 31 2019
45ceddff1be6	gallyamov/richart	Correction of the default element types within element_type_map:	May 31 2019
6d5d7eb67dcf	richart	Few modifications	May 31 2019
b747d8056676	richart	Update on mesh_io_msh read and write	May 29 2019
fba28721befa	richart	Update for latest findcgal.cmake	May 21 2019
7e48d8081c03	richart	Modified MSH reader for version 4.1 of the files	May 21 2019
7a4f63ed245b	richart	Reactivating anisotropic patch tests	May 14 2019
4929f9340ec6	richart	Bug fix in material anisotropic	May 14 2019
66eceb67748c	richart	Correction in transform iterators	Apr 23 2019
2b0ae7185dfd	richart	Adding dof manager tests for petsc	Apr 23 2019
abe40d59ea17	richart	dynamic_cast -> as_type	Apr 5 2019
355731645768	richart	PETSc dynamic solver	Apr 5 2019
400b63f904dc	richart	Removed small tweaks made it more stable by copying the profiles	Mar 27 2019
f05cce9ba8ca	richart	First correct solution obtained with PETSc	Mar 27 2019
c0e6a0777c8d	richart	refactoring some assembly code	Mar 13 2019
0b437330b711	richart	This seams to work to assemble with multiple dofs and in parallel (needs a bit…	Mar 7 2019
abb665e8a286	richart	missing mesh for test dof_manager	Feb 26 2019
c35120f97de3	richart	communicator test	Feb 26 2019
410700165571	richart	oversubscribe	Feb 26 2019
dc121aa961ff	richart	Adding modules for debug	Feb 26 2019
65d6f0a06f07	richart	Refactoring code between dof_managers	Feb 26 2019
ecc7a17aa46e	richart	namespacing the type traits	Jan 30 2019
309d97039fc6	richart	Moving models common tests in a subfolder	Jan 30 2019
e36b5bd73bac	richart	Working start point	Jan 6 2019
9c361a0b26d6	richart	Bug fix in SolverVector	Jan 3 2019
031679801dd5	richart	PETSc compiles adding SolverVector	Jan 2 2019
06c17fcbea47	richart	Bug fixing some tests + sanitizing them	Dec 30 2018
560fb762dcd6	richart	Scoping more enums	Dec 30 2018
8b4d5d785dfe	richart	DOFManagerPETSc almost compiling	Dec 28 2018
46baa0de2ff9	richart	Bug fix in petsc detection	Dec 28 2018
06ae11d8c7a5	richart	advancing in the petsc dof manager	Dec 28 2018
bf714c5486a9	richart	updating the matrix definition	Dec 28 2018
5e1c697c5bdd	richart	Scoping some enums	Dec 28 2018
d751892f65a7	richart	Long overdue cleaning in the model folder	Dec 28 2018
582f5cb87fee	richart	Updating FindPETSc	Dec 28 2018
ff847e3b7b21	richart	adding bool as a mesh_data	Dec 28 2018

Changes (471)
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		Path
M		CMakeLists.txt
M		VERSION
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
D		cmake/Modules/CorrectWindowsPaths.cmake
M		cmake/Modules/FindGMSH.cmake
M		cmake/Modules/FindPETSc.cmake
D		cmake/Modules/FindPackageMultipass.cmake
D		cmake/Modules/ResolveCompilerPaths.cmake
A		cmake/sanitize-blacklist.txt
M		doc/doxygen/CMakeLists.txt
M		doc/manual/manual-solidmechanicsmodel.tex
M		examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
M		examples/embedded/embedded.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
M		examples/python/custom-material/bi-material.py
M		examples/python/plate-hole/plate.py
M		examples/static/static.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.hh
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_inline_impl.cc
M		extra_packages/igfem/src/non_local_manager_igfem.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
M		extra_packages/igfem/test/patch_tests/test_interface_position.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact_inline_impl.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		packages/cgal.cmake
M		packages/core.cmake
M		packages/implicit.cmake
M		packages/mpi.cmake
M		packages/mumps.cmake
M		packages/petsc.cmake
D		packages/python_interpeter.cmake
M		packages/solid_mechanics.cmake
M		python/CMakeLists.txt
M		python/py_aka_array.hh
V		python/{py_aka_boundary_conditions.cc → py_boundary_conditions.cc}
D		python/py_aka_boundary_conditions.hh
M		python/py_aka_common.cc
M		python/py_aka_common.hh
V		python/{py_aka_fe_engine.cc → py_fe_engine.cc}
D		python/py_aka_fe_engine.hh
V		python/{py_aka_heat_transfer_model.cc → py_heat_transfer_model.cc}
D		python/py_aka_heat_transfer_model.hh
V		python/{py_aka_material.cc → py_material.cc}
D		python/py_aka_material.hh
V		python/{py_aka_mesh.cc → py_mesh.cc}
D		python/py_aka_mesh.hh
V		python/{py_aka_model.cc → py_model.cc}
V		python/{py_aka_model.hh → py_model.hh}
V		python/{py_aka_parser.cc → py_parser.cc}
V		python/{py_aka_parser.hh → py_parser.hh}
V		python/{py_aka_solid_mechanics_model.cc → py_solid_mechanics_model.cc}
D		python/py_aka_solid_mechanics_model.hh
V		python/{py_aka_solid_mechanics_model_cohesive.cc → py_solid_mechanics_model_cohesive.cc}
D		python/py_aka_solid_mechanics_model_cohesive.hh
M		python/py_akantu.cc
A		python/py_akantu.hh
V		python/{py_boundary_conditions.cc ← py_aka_boundary_conditions.cc}
A		python/py_boundary_conditions.hh
V		python/{py_fe_engine.cc ← py_aka_fe_engine.cc}
A		python/py_fe_engine.hh
V		python/{py_heat_transfer_model.cc ← py_aka_heat_transfer_model.cc}
A		python/py_heat_transfer_model.hh
V		python/{py_material.cc ← py_aka_material.cc}
A		python/py_material.hh
V		python/{py_mesh.cc ← py_aka_mesh.cc}
A		python/py_mesh.hh
V		python/{py_model.cc ← py_aka_model.cc}
V		python/{py_model.hh ← py_aka_model.hh}
V		python/{py_parser.cc ← py_aka_parser.cc}
V		python/{py_parser.hh ← py_aka_parser.hh}
V		python/{py_solid_mechanics_model.cc ← py_aka_solid_mechanics_model.cc}
A		python/py_solid_mechanics_model.hh
V		python/{py_solid_mechanics_model_cohesive.cc ← py_aka_solid_mechanics_model_cohesive.cc}
A		python/py_solid_mechanics_model_cohesive.hh
M		src/CMakeLists.txt
M		src/common/aka_array.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
M		src/common/aka_enum_macros.hh
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_extern.cc
M		src/common/aka_fwd.hh
M		src/common/aka_iterators.hh
M		src/common/aka_types.hh
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumper_compute.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse.hh
M		src/io/parser/parameter_registry.cc
M		src/io/parser/parameter_registry_tmpl.hh
M		src/io/parser/parser.cc
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/group_manager_inline_impl.cc
M		src/mesh/mesh.cc
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_iterators.hh
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter_inline_impl.cc
M		src/mesh_utils/global_ids_updater.cc
M		src/mesh_utils/global_ids_updater_inline_impl.cc
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_utils.cc
V		src/model/{ → common/boundary_condition}/boundary_condition.hh
V		src/model/{ → common/boundary_condition}/boundary_condition_functor.hh
V		src/model/{ → common/boundary_condition}/boundary_condition_functor_inline_impl.cc
V		src/model/{ → common/boundary_condition}/boundary_condition_tmpl.hh
A	(dir)	src/model/common/boundary_condition/
V		src/model/{common/boundary_condition ← }/boundary_condition.hh
V		src/model/{common/boundary_condition ← }/boundary_condition_functor.hh
V		src/model/{common/boundary_condition ← }/boundary_condition_functor_inline_impl.cc
V		src/model/{common/boundary_condition ← }/boundary_condition_tmpl.hh
A	(dir)	src/model/common/dof_manager/
V		src/model/{common/dof_manager ← }/dof_manager.cc
V		src/model/{common/dof_manager ← }/dof_manager.hh
A		src/model/common/dof_manager/dof_manager_default.cc
V		src/model/{common/dof_manager ← }/dof_manager_default.hh
P		src/model/common/dof_manager/dof_manager_default_inline_impl.cc Copied from src/model/non_linear_solver_default.hh
A		src/model/common/dof_manager/dof_manager_inline_impl.cc
A		src/model/common/dof_manager/dof_manager_petsc.cc
A		src/model/common/dof_manager/dof_manager_petsc.hh
A	(dir)	src/model/common/integration_scheme/
V		src/model/{common ← }/integration_scheme/generalized_trapezoidal.cc
V		src/model/{common ← }/integration_scheme/generalized_trapezoidal.hh
V		src/model/{common ← }/integration_scheme/integration_scheme.cc
V		src/model/{common ← }/integration_scheme/integration_scheme.hh
V		src/model/{common ← }/integration_scheme/integration_scheme_1st_order.cc
V		src/model/{common ← }/integration_scheme/integration_scheme_1st_order.hh
V		src/model/{common ← }/integration_scheme/integration_scheme_2nd_order.cc
V		src/model/{common ← }/integration_scheme/integration_scheme_2nd_order.hh
V		src/model/{common ← }/integration_scheme/newmark-beta.cc
V		src/model/{common ← }/integration_scheme/newmark-beta.hh
V		src/model/{common ← }/integration_scheme/pseudo_time.cc
V		src/model/{common ← }/integration_scheme/pseudo_time.hh
V		src/model/{common ← }/model_solver.cc
V		src/model/{common ← }/model_solver.hh
V		src/model/common/{ → non_local_toolbox}/neighborhood_base.cc
V		src/model/common/{ → non_local_toolbox}/neighborhood_base.hh
V		src/model/common/{ → non_local_toolbox}/neighborhood_base_inline_impl.cc
D		src/model/common/neighborhoods_criterion_evaluation
V		src/model/common/{ → non_local_toolbox}/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
V		src/model/common/{ → non_local_toolbox}/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
V		src/model/common/{ → non_local_toolbox}/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
A	(dir)	src/model/common/non_linear_solver/
V		src/model/{common/non_linear_solver ← }/non_linear_solver.cc
P		src/model/common/non_linear_solver/non_linear_solver.hh Copied from src/model/non_linear_solver.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_default.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_linear.cc
V		src/model/{common/non_linear_solver ← }/non_linear_solver_linear.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_lumped.cc
V		src/model/{common/non_linear_solver ← }/non_linear_solver_lumped.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_newton_raphson.cc
V		src/model/{common/non_linear_solver ← }/non_linear_solver_newton_raphson.hh
A		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
V		src/model/{common/non_linear_solver/non_linear_solver_petsc.hh ← non_linear_solver.hh}
V		src/model/common/{non_local_toolbox ← }/neighborhood_base.cc
V		src/model/common/{non_local_toolbox ← }/neighborhood_base.hh
V		src/model/common/{non_local_toolbox ← }/neighborhood_base_inline_impl.cc
A	(dir)	src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/
V		src/model/common/{non_local_toolbox ← }/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
V		src/model/common/{non_local_toolbox ← }/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
V		src/model/common/{non_local_toolbox ← }/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
V		src/model/{common ← }/solver_callback.cc
V		src/model/{common ← }/solver_callback.hh
A	(dir)	src/model/common/time_step_solvers/
V		src/model/{common ← }/time_step_solvers/time_step_solver.cc
V		src/model/{common/time_step_solvers ← }/time_step_solver.hh
V		src/model/{common ← }/time_step_solvers/time_step_solver_default.cc
V		src/model/{common ← }/time_step_solvers/time_step_solver_default.hh
V		src/model/{common ← }/time_step_solvers/time_step_solver_default_explicit.hh
V		src/model/{ → common/dof_manager}/dof_manager.cc
V		src/model/{ → common/dof_manager}/dof_manager.hh
D		src/model/dof_manager_default.cc
V		src/model/{ → common/dof_manager}/dof_manager_default.hh
D		src/model/dof_manager_default_inline_impl.cc
D		src/model/dof_manager_inline_impl.cc
D		src/model/dof_manager_petsc.cc
D		src/model/dof_manager_petsc.hh
M		src/model/heat_transfer/heat_transfer_model.cc
D		src/model/integration_scheme
V		src/model/{ → common}/integration_scheme/generalized_trapezoidal.cc
V		src/model/{ → common}/integration_scheme/generalized_trapezoidal.hh
V		src/model/{ → common}/integration_scheme/integration_scheme.cc
V		src/model/{ → common}/integration_scheme/integration_scheme.hh
V		src/model/{ → common}/integration_scheme/integration_scheme_1st_order.cc
V		src/model/{ → common}/integration_scheme/integration_scheme_1st_order.hh
V		src/model/{ → common}/integration_scheme/integration_scheme_2nd_order.cc
V		src/model/{ → common}/integration_scheme/integration_scheme_2nd_order.hh
V		src/model/{ → common}/integration_scheme/newmark-beta.cc
V		src/model/{ → common}/integration_scheme/newmark-beta.hh
V		src/model/{ → common}/integration_scheme/pseudo_time.cc
V		src/model/{ → common}/integration_scheme/pseudo_time.hh
M		src/model/model.cc
M		src/model/model_inline_impl.cc
V		src/model/{ → common}/model_solver.cc
V		src/model/{ → common}/model_solver.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver.cc
P		src/model/non_linear_solver.hh Deleted after being copied to multiple locations: src/model/common/non_linear_solver/non_linear_solver.hh src/model/common/non_linear_solver/non_linear_solver_petsc.hh
D		src/model/non_linear_solver_callback.hh
P		src/model/non_linear_solver_default.hh Deleted after being copied to multiple locations: src/model/common/dof_manager/dof_manager_default_inline_impl.cc src/model/common/non_linear_solver/non_linear_solver_default.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver_linear.cc
V		src/model/{ → common/non_linear_solver}/non_linear_solver_linear.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver_lumped.cc
V		src/model/{ → common/non_linear_solver}/non_linear_solver_lumped.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver_newton_raphson.cc
V		src/model/{ → common/non_linear_solver}/non_linear_solver_newton_raphson.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
V		src/model/{ → common}/solver_callback.cc
V		src/model/{ → common}/solver_callback.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
V		src/model/{ → common/time_step_solvers}/time_step_solver.hh
D		src/model/time_step_solvers
V		src/model/{ → common}/time_step_solvers/time_step_solver.cc
V		src/model/{ → common}/time_step_solvers/time_step_solver_default.cc
V		src/model/{ → common}/time_step_solvers/time_step_solver_default.hh
V		src/model/{ → common}/time_step_solvers/time_step_solver_default_explicit.hh
D		src/model/time_step_solvers/time_step_solver_default_solver_callback.hh
M		src/solver/petsc_wrapper.hh
M		src/solver/solver_petsc.cc
M		src/solver/solver_petsc.hh
A		src/solver/solver_vector.hh
A		src/solver/solver_vector_default.cc
A		src/solver/solver_vector_default.hh
A		src/solver/solver_vector_default_tmpl.hh
A		src/solver/solver_vector_distributed.cc
A		src/solver/solver_vector_distributed.hh
A		src/solver/solver_vector_petsc.cc
A		src/solver/solver_vector_petsc.hh
M		src/solver/sparse_matrix.cc
P		src/solver/sparse_matrix.hh Copied to src/solver/sparse_matrix_petsc.hh
M		src/solver/sparse_matrix_aij.cc
M		src/solver/sparse_matrix_aij.hh
M		src/solver/sparse_matrix_aij_inline_impl.cc
M		src/solver/sparse_matrix_petsc.cc
P		src/solver/sparse_matrix_petsc.hh Copied from src/solver/sparse_matrix.hh
M		src/solver/sparse_solver_inline_impl.cc
M		src/solver/sparse_solver_mumps.cc
M		src/synchronizer/communicator.cc
M		src/synchronizer/communicator.hh
M		src/synchronizer/communicator_dummy_inline_impl.cc
M		src/synchronizer/communicator_inline_impl.hh
M		src/synchronizer/communicator_mpi_inline_impl.cc
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer_inline_impl.cc
M		src/synchronizer/element_info_per_processor_tmpl.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/master_element_info_per_processor.cc
M		src/synchronizer/node_info_per_processor.cc
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/synchronizer_impl_tmpl.hh
M		test/test_common/test_array.cc
M		test/test_fe_engine/test_fe_engine_fixture.hh
M		test/test_fe_engine/test_fe_engine_gauss_integration.cc
M		test/test_fe_engine/test_fe_engine_precomputation.cc
M		test/test_fe_engine/test_fe_engine_precomputation_structural.cc
M		test/test_fe_engine/test_fe_engine_structural_fixture.hh
M		test/test_fe_engine/test_gradient.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_fe_engine/test_inverse_map.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_mesh/test_mesh_periodic.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_model/CMakeLists.txt
M		test/test_model/patch_tests/CMakeLists.txt
V		test/test_model/patch_tests/data/{material_anisotropic.dat → material_anisotropic_3.dat}
A		test/test_model/patch_tests/data/material_anisotropic_1.dat
A		test/test_model/patch_tests/data/material_anisotropic_2.dat
V		test/test_model/patch_tests/data/{material_anisotropic_3.dat ← material_anisotropic.dat}
A		test/test_model/patch_tests/patch_test_linear_anisotropic.cc
D		test/test_model/patch_tests/patch_test_linear_anisotropic_explicit.cc
M		test/test_model/patch_tests/patch_test_linear_elastic_implicit.cc
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_static.cc
M		test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.hh
M		test/test_model/patch_tests/test_lumped_mass.cc
M		test/test_model/patch_tests/test_patch_linear_elastic_static.py
M		test/test_model/patch_tests/test_patch_linear_heat_transfer_static.py
A	(dir)	test/test_model/test_common/
A		test/test_model/test_common/CMakeLists.txt
A		test/test_model/test_common/mesh.geo
A		test/test_model/test_common/test_dof_manager.cc
A	(dir)	test/test_model/test_common/test_model_solver/
V		test/test_model/{test_common ← }/test_model_solver/CMakeLists.txt
V		test/test_model/{test_common ← }/test_model_solver/test_dof_manager_default.cc
V		test/test_model/{test_common ← }/test_model_solver/test_dof_manager_default.verified
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver.cc
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver.py
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic.cc
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic.py
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic_explicit.verified
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic_implicit.verified
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.verified
P		test/test_model/test_common/test_model_solver/test_model_solver_mumps.verified Copied from test/test_model/test_model_solver/test_model_solver.verified
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_my_model.hh
V		test/test_model/{test_common/test_model_solver/test_model_solver_petsc.verified ← test_model_solver/test_model_solver.verified}
A	(dir)	test/test_model/test_common/test_non_local_toolbox/
V		test/test_model/{test_common ← }/test_non_local_toolbox/CMakeLists.txt
V		test/test_model/{test_common ← }/test_non_local_toolbox/fine_mesh.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/material.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_avg.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_parallel_test.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_remove_damage.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_weight_computation.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/my_model.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/pair_test.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/parallel_test.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/plate.geo
V		test/test_model/{test_common ← }/test_non_local_toolbox/plate.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/plot_neighborhoods.py
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_build_neighborhood_parallel.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material_damage.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material_damage.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_averaging.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_neighborhood_base.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_neighborhood_base.verified
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_pair_computation.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_remove_damage_weight_function.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_remove_damage_weight_function.verified
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_weight_computation.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_weight_computation.verified
D		test/test_model/test_model_solver
V		test/test_model/{ → test_common}/test_model_solver/CMakeLists.txt
V		test/test_model/{ → test_common}/test_model_solver/test_dof_manager_default.cc
V		test/test_model/{ → test_common}/test_model_solver/test_dof_manager_default.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver.cc
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver.py
P		test/test_model/test_model_solver/test_model_solver.verified Deleted after being copied to multiple locations: test/test_model/test_common/test_model_solver/test_model_solver_mumps.verified test/test_model/test_common/test_model_solver/test_model_solver_petsc.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic.cc
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic.py
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic_explicit.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic_implicit.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_my_model.hh
D		test/test_model/test_non_local_toolbox
V		test/test_model/{ → test_common}/test_non_local_toolbox/CMakeLists.txt
V		test/test_model/{ → test_common}/test_non_local_toolbox/fine_mesh.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/material.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_avg.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_parallel_test.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_remove_damage.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_weight_computation.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/my_model.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/pair_test.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/parallel_test.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/plate.geo
V		test/test_model/{ → test_common}/test_non_local_toolbox/plate.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/plot_neighborhoods.py
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_build_neighborhood_parallel.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material_damage.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material_damage.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_averaging.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_neighborhood_base.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_neighborhood_base.verified
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_pair_computation.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_remove_damage_weight_function.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_remove_damage_weight_function.verified
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_weight_computation.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_weight_computation.verified
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic_impl/test_cohesive_intrinsic_impl.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_multi_material_elastic.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
M		test/test_python_interface/CMakeLists.txt
A		test/test_python_interface/elastic.dat
A		test/test_python_interface/mesh_dcb_2d.geo
M		test/test_python_interface/test_common.cc
M		test/test_python_interface/test_pybind.py
M		test/test_solver/CMakeLists.txt
M		test/test_solver/test_petsc_matrix_profile.cc
M		test/test_solver/test_petsc_matrix_profile_parallel.cc
M		test/test_solver/test_solver_petsc.cc
M		test/test_solver/test_sparse_matrix_product.cc
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/CMakeLists.txt
A		test/test_synchronizer/test_communicator.cc
M		test/test_synchronizer/test_data_distribution.cc
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_node_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc