Diffusion akantu 69c3f4c90ff0

Merge branch 'master' into features/petsc
69c3f4c90ff0
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Authored by richart on Jun 5 2019, 17:47.

Description

Merge branch 'master' into features/petsc

Details

Committed

richart

Jun 5 2019, 17:47

Pushed

richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

Parents

rAKAaa8c5c4077ce: Minor bug fixes
rAKA8a8cbaa53817: Few modifications

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Event Timeline

richart committed rAKA69c3f4c90ff0: Merge branch 'master' into features/petsc (authored by richart).Jun 5 2019, 17:47

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit		Author	Details	Committed
aa8c5c4077ce		richart	Minor bug fixes	Jun 5 2019
d77e9ccf0452		richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Jun 4 2019
7a04471d3e4d		richart	Bug fix in the MSH reader version 4	Jun 2 2019
b1971f0dd3a7		richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	May 31 2019
e8875aefc8da		anciaux/richart	correct the construction of the element filter with ek_regular	May 31 2019
e6acdd6c5042		gallyamov/richart	Correction of the default element types within element_type_map:	May 31 2019
df7dd4dc2abc		richart	Update on mesh_io_msh read and write	May 29 2019
fddfb5094d24		richart	Update for latest findcgal.cmake	May 21 2019
84880d975de9		richart	Modified MSH reader for version 4.1 of the files	May 21 2019
c992924e0405		richart	Reactivating anisotropic patch tests	May 14 2019
c42b7b3e4d52		richart	Bug fix in material anisotropic	May 14 2019
f472fed08c4c		anciaux	change a path	May 9 2019
0a930296a24d		anciaux	adding an example extracting the stiffness amtrix	Mar 26 2019
b879bd479ec6		anciaux	modifying the swig temporarily to have access to aij sparse matrices	Mar 26 2019
9eaed4318be9		anciaux	adding an example extracting the stiffness amtrix	Mar 26 2019
ad8da63e2e3d		frerot	setting rpath for python extension	Mar 20 2019
76e9be0a5b66		richart	exposing partitionate parameters in distribute	Feb 26 2019
431ad889f5c5		richart	Adding traction test for Mazars	Feb 13 2019
5424eed87428		richart	Correction in the ci handling	Feb 8 2019
cbdb1e7d0583		richart	Create matrices at the earliest moment	Feb 8 2019
f8a03d4d85b9		richart	Bug fixing some tests + sanitizing them	Feb 8 2019
87e540f9faa7		richart	Swig protection	Feb 8 2019
c263b07d61fc	D197	fouad/richart	Correcting examples and tests	Feb 6 2019
bd7e5993bf83		richart	Adding a debug message to the ci	Feb 5 2019
8e18d660550e		richart	Adding iterator_traits to column_iterator	Feb 5 2019
3f02cd677bf3		richart	Promoting the arange to a forward iterator	Feb 5 2019
832d879319a6		richart	some code cleaning	Jan 30 2019
5adae7dba462		richart	zip cat iterator	Jan 30 2019
1c60fe620524		richart	removing dead code	Jan 29 2019
4ffeb75ecfda		richart	Bug fix in column iterator and some cleaning	Jan 29 2019
3ceff0e60343		richart	Adding filtered iterator and zip iterator random_access possibility	Jan 29 2019
40783bf8df0e		richart	pipefail illegal option...	Jan 29 2019
8fa1db0f5b25		richart	Proper way to set pipefail shell option	Jan 29 2019
957db5e53127		richart	Factoring the tests	Jan 29 2019
93c5feeceadd		richart	Fighting to really make it fail urly	Jan 29 2019
204794a30ebd		richart	Do not try to continue if compilation error occurs	Jan 29 2019
602986794a95		richart	Missing arcanist dependencies	Jan 29 2019
7e77c430d622		richart	arcanist in the package of Dockerfile	Jan 29 2019
d0b37677147c		richart	Installing arcanist by hand in the dockerfile	Jan 29 2019
f429b1448a8a		richart	Pushing file reports to harbormaster in case of failure	Jan 22 2019
ca4fcfd6ba44		richart	Bug fix in heat transfer	Jan 22 2019
079fccbb5a42		richart	Adding column iterator on Matrix	Jan 22 2019
89dc921702b7		richart	Cleaning a bit the Jenkinsfile	Jan 21 2019
b3edd5d0b34d		richart	Adding linters in the dockerfile	Jan 18 2019
3478848b0145		richart	Ok switch to stupid lint	Jan 17 2019
4619ca8a2117		richart	Escape character	Jan 17 2019
2e32ebcb2e97		richart	Typo in the Jenkinsfile	Jan 17 2019
7dc72e378d3b		richart	A bit more on the linter	Jan 17 2019
1c327375818a		richart	Don't panic this will be linted next commit	Jan 16 2019
a40bfbf82923		richart	Try harder	Jan 16 2019

Changes (132)
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Very Large Commit

This commit is very large. Load each file individually.

		Path
M		.arcconfig
M		.arclint
M		CMakeLists.txt
V		{ → test/ci}/Dockerfile
M		Jenkinsfile
M		cmake/AkantuCleaning.cmake
M		cmake/akantu_environement.csh.in
M		cmake/akantu_environement.sh.in
M		cmake/akantu_test_driver.sh
M		examples/boundary_conditions/predefined_bc/predefined_bc.cc
M		examples/boundary_conditions/predefined_bc/square.geo
M		examples/boundary_conditions/user_defined_bc/fine_mesh.geo
M		examples/boundary_conditions/user_defined_bc/user_defined_bc.cc
M		examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
M		examples/cohesive_element/cohesive_extrinsic/material.dat
M		examples/cohesive_element/cohesive_extrinsic_ig_tg/material.dat
M		examples/embedded/embedded.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/io/dumper/dumpable_interface.cc
M		examples/io/dumper/dumper_low_level.cc
M		examples/io/parser/example_parser.cc
M		examples/new_material/local_material_damage.cc
M		examples/new_material/new_local_material.cc
M		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
M		examples/python/CMakeLists.txt
A	(dir)	examples/python/stiffness_matrix/
A		examples/python/stiffness_matrix/CMakeLists.txt
A		examples/python/stiffness_matrix/material.dat
A		examples/python/stiffness_matrix/plate.geo
A		examples/python/stiffness_matrix/plate.msh
A		examples/python/stiffness_matrix/stiffness_matrix.py
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		packages/cgal.cmake
M		packages/solid_mechanics.cmake
M		python/setup.py.in
M		python/swig/aka_array.i
M		python/swig/mesh.i
M		python/swig/model.i
M		python/swig/sparse_matrix.i
M		src/common/aka_common.hh
M		src/common/aka_types.hh
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/shape_cohesive_inline_impl.cc
M		src/fe_engine/shape_functions.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/group_manager_inline_impl.cc
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/node_group.hh
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
M		src/model/common/dof_manager/dof_manager.hh
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_default.hh
M		src/model/common/model_solver.cc
M		src/model/common/time_step_solvers/time_step_solver.cc
M		src/model/common/time_step_solvers/time_step_solver.hh
M		src/model/common/time_step_solvers/time_step_solver_default.cc
M		src/model/common/time_step_solvers/time_step_solver_default.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		test/CMakeLists.txt
A	(dir)	test/ci/
V		{test/ci ← }/Dockerfile
A	(dir)	test/ci/scripts/
A		test/ci/scripts/CTestResults.xml
A	(dir)	test/ci/scripts/harbomaster/
A		test/ci/scripts/harbomaster/__init__.py
A		test/ci/scripts/harbomaster/arclint.py
A		test/ci/scripts/harbomaster/ctestresults.py
A		test/ci/scripts/harbomaster/hbm.py
A		test/ci/scripts/harbomaster/results.py
A		test/ci/scripts/hbm
V		test/{ ← test_fe_engine}/pybind11_akantu.cc
V		test/{ ← test_fe_engine}/pybind11_akantu.hh
M		test/test_common/test_iterators.cc
M		test/test_common/test_tensors.cc
M		test/test_fe_engine/CMakeLists.txt
V		test/{test_fe_engine → }/pybind11_akantu.cc
V		test/{test_fe_engine → }/pybind11_akantu.hh
M		test/test_fe_engine/test_gradient.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_fe_engine/test_inverse_map.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_model/patch_tests/CMakeLists.txt
V		test/test_model/patch_tests/data/{material_anisotropic.dat → material_anisotropic_3.dat}
A		test/test_model/patch_tests/data/material_anisotropic_1.dat
A		test/test_model/patch_tests/data/material_anisotropic_2.dat
V		test/test_model/patch_tests/data/{material_anisotropic_3.dat ← material_anisotropic.dat}
A		test/test_model/patch_tests/patch_test_linear_anisotropic.cc
D		test/test_model/patch_tests/patch_test_linear_anisotropic_explicit.cc
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/test_common/test_dof_manager.cc
M		test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_quasistatic.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/py_mazars.py
M		test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc