akantu-private
6fc95097d887
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Authored by richart on Nov 27 2019, 14:06.

Description

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private

Details

Committed

Nov 27 2019, 14:06

Pushed

richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

Parents

rAKAdbdc45a8aac7: Updating the doc for external dumpers
rAKA1679e030bb0f: adding the meshdatamaterialselector handling

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Event Timeline

richart committed rAKA6fc95097d887: Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private (authored by richart).Nov 27 2019, 14:06

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
1679e030bb0f	anciaux	adding the meshdatamaterialselector handling	Nov 7 2019
c4af0da6117d	anciaux	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Nov 7 2019
1d436d1e0a06	richart	Correcting bug introduced in rAKAPRIVe3715c23639b	Nov 6 2019
18549d2da848	anciaux	adding a feature for node groups	Nov 6 2019
f4a623ac3799	anciaux	add library dependence for aka pybind	Nov 6 2019
33b2a21d75fa	anciaux	adding possibilities for the element/node groups	Nov 6 2019
7a6ed39f0500	richart	Adding more missing files	Nov 6 2019
85ac96c4376b	richart	Adding missing file	Nov 6 2019
f4dc9f79613b	richart	policy CMP0077	Nov 1 2019
78e134e83f4d	richart	Including akantu_iterators as a sub project	Nov 1 2019
8c9a9413ebc1	richart	modify gitignore	Oct 30 2019
ad16c438b134	richart	Add 'third-party/akantu_iterators/' from commit…	Oct 30 2019
5cff0fa4bf8f	richart	cleaning repo to move to sub repo	Oct 30 2019
e3715c23639b	richart	Bug fix for cmake > 3.11	Oct 30 2019
56255d81fade	richart	Minor change to limit the number of cores for the tests	Oct 30 2019
7f3d662810a7	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Oct 28 2019
67bc28894cfb	richart	Make akantu compile again on ubuntu xenial	Oct 28 2019
7f23c307f1b4	richart	Activating tests	Oct 24 2019
13d68d30eedc	richart	adding linters	Oct 23 2019
e11edcd7e66d	richart	moving ci files	Oct 23 2019
26ce4be418ac	richart	Adding jenkinsfile	Oct 23 2019
26c5b9e06429	richart	Add 'test/ci/' from commit 'e20109b241d517abe8e2869216562914ee05aaf3'	Oct 23 2019
0d5687c171e7	richart	initial commit	Oct 23 2019
98e31aa37f35	anciaux	fix bug on the group manager python interface	Oct 10 2019
5dcbd68a7b1a	richart	onElementAdded only for elements of the correct dimension	Oct 4 2019
dd086a28369f	richart	Moving the flipFacet call to the mesh facet creation code	Oct 4 2019
d95b4e96bb27	richart	minor enhancements	Oct 4 2019
ff09fbb08786	richart	adding info to mesh events	Oct 4 2019
afa9cc913c79	richart	Tangent matrix re-computation a bit more clever	Oct 4 2019
7d424091fb1d	anciaux	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Oct 1 2019
a7432c4bab43	anciaux	dirty hack to allow to dump a numpy array	Sep 27 2019
442a2f57fe23	anciaux	saving the test for large rotations	Sep 27 2019
baac59a38a62	anciaux	temporary fix to pass a numpy to be dumped	Sep 27 2019
aaddfc6e06ae	anciaux	adding a adddumpfieldexternal	Sep 27 2019
dcc281330a72	anciaux	adding the example on finite rotation in dynamics	Sep 24 2019
0ef5d87d9034	richart	Add 'test/ci/scripts/' from commit 'e20109b241d517abe8e2869216562914ee05aaf3'	Sep 24 2019
b6a4af4f0f62	richart	splitting repositories	Sep 24 2019
e20109b241d5	richart	arclinting arclint.py	Sep 24 2019
5d294161d2fc	richart	cleaning usless files	Sep 24 2019
aaace74d37ac	richart	preparation to split hbm scripts in a different project	Sep 24 2019
9b0b8a6b22b2	richart	preparation to split hbm scripts in a different project	Sep 24 2019
f000ed9c0072	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Sep 24 2019
07f320d9a304	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
e28fc6cfa113	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
c59021d18d8e	richart	bug in the interface	Sep 17 2019
60e435467a35	richart	Bug fix in exclusiveScan in sequential	Sep 17 2019
863d3f407e40	richart	cleaning the code	Sep 4 2019
f7fc640b45bc	richart	Do not compute shape derivatives on all type in onElementsAdded	Aug 27 2019
155d19a093b4	richart	linting to make jenkins happy again	Aug 27 2019
8fec248f8b4b	richart	missed the structural shape functions	Aug 27 2019

Changes (532)
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Very Large Commit

This commit is very large. Load each file individually.

		Path
A		.flake8
P		.gitignore Copied to third-party/akantu_iterators/.gitignore
M		CMakeLists.txt
M		Jenkinsfile
M		cmake/AkantuExampleMacros.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuSimulationMacros.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
M		cmake/Modules/FindGMSH.cmake
M		cmake/libakantu/v3/printers.py
M		examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
M		examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
M		examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
M		examples/cohesive_element/cohesive_intrinsic/triangle.geo
M		examples/explicit/explicit_dynamic.cc
M		examples/heat_transfer/heat_transfer_static_2d.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/io/dumper/CMakeLists.txt
M		examples/io/dumper/dumpable_interface.cc
M		examples/io/dumper/dumper_low_level.cc
M		examples/new_material/local_material_damage.cc
M		examples/new_material/local_material_damage.hh
M		examples/new_material/local_material_damage_inline_impl.hh
M		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
P		examples/parallel/CMakeLists.txt Copied to packages/akantu_iterators.cmake
M		examples/python/CMakeLists.txt
A		examples/python/cohesive/CMakeLists.txt
M		examples/python/cohesive/plate.py
M		examples/python/custom-material/CMakeLists.txt
M		examples/python/custom-material/bi-material.py
M		examples/python/custom-material/custom-material.py
A		examples/python/dynamics/CMakeLists.txt
M		examples/python/dynamics/dynamics.py
A		examples/python/eigen_modes/CMakeLists.txt
M		examples/python/eigen_modes/eigen_modes.py
M		examples/python/eigen_modes/image_saver.py
M		examples/python/plate-hole/CMakeLists.txt
D		examples/python/plate-hole/plate-mpi.py
M		examples/python/plate-hole/plate.py
M		examples/python/stiffness_matrix/CMakeLists.txt
M		examples/python/stiffness_matrix/plate.msh
M		examples/python/stiffness_matrix/stiffness_matrix.py
M		extra_packages/extra-materials/src/material_FE2/material_FE2.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
M		extra_packages/extra-materials/src/material_damage/material_brittle_inline_impl.cc
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.cc
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.cc
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
M		extra_packages/extra-materials/src/material_damage/material_vreepeerlings_inline_impl.cc
M		extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
M		extra_packages/igfem/src/element_class_igfem.hh
M		extra_packages/igfem/src/igfem_enrichment.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
M		extra_packages/igfem/src/mesh_igfem_spherical_growing_gel_tmpl.hh
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
M		extra_packages/igfem/test/patch_tests/test_interface_position.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
M		extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.hh
P		packages/akantu_iterators.cmake Copied from examples/parallel/CMakeLists.txt
M		packages/core.cmake
M		packages/mumps.cmake
M		packages/pybind11.cmake
M		python/CMakeLists.txt
A		python/py11_akantu.cc
M		python/py_aka_array.hh
M		python/py_akantu.cc
M		python/py_dumpable.cc
M		python/py_group_manager.cc
M		python/py_material.cc
M		python/py_mesh.cc
M		python/py_model.cc
M		python/py_solid_mechanics_model.cc
M		src/common/aka_array.hh
M		src/common/aka_array_printer.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_bbox.hh
M		src/common/aka_blas_lapack.hh
M		src/common/aka_circular_array.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
D		src/common/aka_compatibilty_with_cpp_standard.hh
M		src/common/aka_csr.hh
M		src/common/aka_element_classes_info_inline_impl.cc
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_grid_dynamic.hh
V		{src/common → third-party/akantu_iterators/include}/aka_iterators.hh
M		src/common/aka_math.cc
M		src/common/aka_math.hh
M		src/common/aka_math_tmpl.hh
M		src/common/aka_memory.cc
M		src/common/aka_memory.hh
M		src/common/aka_random_generator.hh
M		src/common/aka_safe_enum.hh
V		{src/common → third-party/akantu_iterators/include}/aka_static_if.hh
M		src/common/aka_static_memory.cc
M		src/common/aka_typelist.hh
M		src/common/aka_types.hh
M		src/common/aka_visitor.hh
M		src/common/aka_voigthelper.cc
M		src/common/aka_voigthelper.hh
M		src/common/aka_voigthelper_tmpl.hh
M		src/fe_engine/element.hh
M		src/fe_engine/element_class.hh
M		src/fe_engine/element_classes/element_class_hermite_inline_impl.cc
M		src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
M		src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
M		src/fe_engine/element_classes/element_class_triangle_6_inline_impl.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_inline_impl.cc
M		src/fe_engine/fe_engine_template_cohesive.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/fe_engine_template_tmpl_field.hh
M		src/fe_engine/fe_engine_template_tmpl_struct.hh
M		src/fe_engine/gauss_integration_tmpl.hh
M		src/fe_engine/geometrical_element_property.cc
M		src/fe_engine/geometrical_element_property.hh
M		src/fe_engine/integration_point.hh
M		src/fe_engine/integrator.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.cc
M		src/fe_engine/interpolation_element_tmpl.hh
M		src/fe_engine/shape_cohesive.hh
M		src/fe_engine/shape_cohesive_inline_impl.cc
M		src/fe_engine/shape_functions.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/fe_engine/shape_lagrange_base.hh
M		src/fe_engine/shape_lagrange_inline_impl.cc
M		src/fe_engine/shape_structural.cc
M		src/fe_engine/shape_structural.hh
M		src/fe_engine/shape_structural_inline_impl.cc
M		src/geometry/aabb_primitives/aabb_primitive.cc
M		src/geometry/aabb_primitives/aabb_primitive.hh
M		src/geometry/aabb_primitives/line_arc.hh
M		src/geometry/aabb_primitives/tetrahedron.hh
M		src/geometry/aabb_primitives/triangle.hh
M		src/geometry/geom_helper_functions.hh
M		src/geometry/mesh_abstract_intersector.hh
M		src/geometry/mesh_abstract_intersector_tmpl.hh
M		src/geometry/mesh_geom_abstract.hh
M		src/geometry/mesh_geom_common.hh
M		src/geometry/mesh_geom_factory.hh
M		src/geometry/mesh_geom_factory_tmpl.hh
M		src/geometry/mesh_geom_intersector.hh
M		src/geometry/mesh_geom_intersector_tmpl.hh
M		src/geometry/mesh_segment_intersector.hh
M		src/geometry/mesh_sphere_intersector.hh
M		src/geometry/mesh_sphere_intersector_tmpl.hh
M		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable_dummy.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumpable_iohelper.hh
M		src/io/dumper/dumper_compute.hh
M		src/io/dumper/dumper_element_iterator.hh
M		src/io/dumper/dumper_element_partition.hh
M		src/io/dumper/dumper_elemental_field.hh
M		src/io/dumper/dumper_filtered_connectivity.hh
M		src/io/dumper/dumper_internal_material_field.hh
M		src/io/dumper/dumper_iohelper.hh
M		src/io/dumper/dumper_iohelper_paraview.hh
M		src/io/dumper/dumper_material_padders.hh
M		src/io/dumper/dumper_nodal_field.hh
M		src/io/dumper/dumper_padding_helper.hh
M		src/io/dumper/dumper_text.hh
M		src/io/dumper/dumper_type_traits.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io/mesh_io_diana.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh_struct.cc
M		src/io/mesh_io/mesh_io_msh_struct.hh
M		src/io/parser/algebraic_parser.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse_tmpl.hh
M		src/io/parser/input_file_parser.hh
M		src/io/parser/parameter_registry.cc
M		src/io/parser/parameter_registry.hh
M		src/io/parser/parsable.cc
M		src/io/parser/parser.cc
M		src/io/parser/parser.hh
M		src/io/parser/parser_grammar_tmpl.hh
M		src/io/parser/parser_input_files.cc
M		src/io/parser/parser_real.cc
M		src/io/parser/parser_tmpl.hh
M		src/io/parser/parser_types.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_events.hh
M		src/mesh/mesh_filter.hh
M		src/mesh/mesh_global_data_updater.hh
M		src/mesh/mesh_inline_impl.cc
M		src/mesh/mesh_iterators.hh
M		src/mesh/mesh_periodic.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.cc
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
M		src/mesh_utils/cohesive_element_inserter_parallel.cc
M		src/mesh_utils/global_ids_updater.cc
M		src/mesh_utils/global_ids_updater.hh
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
M		src/mesh_utils/mesh_utils_distribution.hh
M		src/mesh_utils/mesh_utils_inline_impl.cc
M		src/mesh_utils/mesh_utils_pbc.cc
M		src/model/common/boundary_condition/boundary_condition.hh
M		src/model/common/boundary_condition/boundary_condition_tmpl.hh
M		src/model/common/dof_manager/dof_manager.cc
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_default.hh
M		src/model/common/dof_manager/dof_manager_default_inline_impl.cc
M		src/model/common/dof_manager/dof_manager_petsc.hh
M		src/model/common/integration_scheme/generalized_trapezoidal.cc
M		src/model/common/integration_scheme/integration_scheme.cc
M		src/model/common/integration_scheme/integration_scheme_1st_order.cc
M		src/model/common/integration_scheme/integration_scheme_1st_order.hh
M		src/model/common/integration_scheme/integration_scheme_2nd_order.cc
M		src/model/common/integration_scheme/integration_scheme_2nd_order.hh
M		src/model/common/integration_scheme/newmark-beta.cc
M		src/model/common/integration_scheme/pseudo_time.cc
M		src/model/common/model_solver.cc
M		src/model/common/model_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver_linear.cc
M		src/model/common/non_linear_solver/non_linear_solver_linear.hh
M		src/model/common/non_linear_solver/non_linear_solver_lumped.cc
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
M		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
M		src/model/common/non_linear_solver/non_linear_solver_petsc.hh
M		src/model/common/non_local_toolbox/base_weight_function_inline_impl.cc
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/solver_callback.hh
M		src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/model_inline_impl.cc
M		src/model/model_options.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
M		src/model/solid_mechanics/materials/random_internal_field.hh
M		src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
M		src/model/solid_mechanics/solid_mechanics_model_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
M		src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
M		src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
M		src/model/structural_mechanics/structural_mechanics_model_boundary.cc
M		src/model/structural_mechanics/structural_mechanics_model_mass.cc
M		src/solver/petsc_wrapper.hh
M		src/solver/solver_petsc.hh
M		src/solver/solver_vector.hh
M		src/solver/solver_vector_default.cc
M		src/solver/solver_vector_default.hh
M		src/solver/solver_vector_default_tmpl.hh
M		src/solver/solver_vector_petsc.hh
M		src/solver/sparse_matrix.cc
M		src/solver/sparse_matrix.hh
M		src/solver/sparse_matrix_aij_inline_impl.cc
M		src/solver/sparse_matrix_inline_impl.cc
M		src/solver/sparse_matrix_petsc.cc
M		src/solver/sparse_matrix_petsc.hh
M		src/solver/sparse_solver.cc
M		src/solver/sparse_solver.hh
M		src/solver/sparse_solver_mumps.cc
M		src/solver/sparse_solver_mumps.hh
M		src/solver/terms_to_assemble.hh
M		src/synchronizer/communication_buffer.hh
M		src/synchronizer/communication_buffer_inline_impl.cc
M		src/synchronizer/communication_descriptor_tmpl.hh
M		src/synchronizer/communication_request.hh
M		src/synchronizer/communication_tag.hh
M		src/synchronizer/communications_tmpl.hh
M		src/synchronizer/communicator_dummy_inline_impl.cc
M		src/synchronizer/communicator_event_handler.hh
M		src/synchronizer/communicator_mpi_inline_impl.cc
M		src/synchronizer/data_accessor.cc
M		src/synchronizer/data_accessor.hh
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/dof_synchronizer_inline_impl.cc
M		src/synchronizer/element_info_per_processor.cc
M		src/synchronizer/element_info_per_processor.hh
M		src/synchronizer/element_info_per_processor_tmpl.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/facet_synchronizer.cc
M		src/synchronizer/grid_synchronizer.cc
M		src/synchronizer/master_element_info_per_processor.cc
M		src/synchronizer/node_info_per_processor.hh
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/synchronizer_registry.cc
M		src/synchronizer/synchronizer_registry.hh
M		src/synchronizer/synchronizer_tmpl.hh
P		test/ci/Dockerfile Copied to third-party/akantu_iterators/test/ci/Dockerfile
A		test/ci/scripts/.arcconfig
A		test/ci/scripts/.arclint
A		test/ci/scripts/COPYING
A		test/ci/scripts/COPYING.lesser
D		test/ci/scripts/CTestResults.xml
P		test/ci/scripts/harbomaster/__init__.py Copied to third-party/akantu_iterators/test/ci/scripts/harbomaster/__init__.py
P		test/ci/scripts/harbomaster/arclint.py Copied to third-party/akantu_iterators/test/ci/scripts/harbomaster/arclint.py
D		test/ci/scripts/harbomaster/ctestresults.py
P		test/ci/scripts/harbomaster/hbm.py Copied to third-party/akantu_iterators/test/ci/scripts/harbomaster/hbm.py
M		test/ci/scripts/harbomaster/results.py
A		test/ci/scripts/harbomaster/testresults.py
P		test/ci/scripts/hbm Copied to third-party/akantu_iterators/test/ci/scripts/hbm
M		test/python_fe/__init__.py
M		test/test_common/test_grid.cc
P		test/test_common/test_iterators.cc Copied to third-party/akantu_iterators/test/test_iterators.cc
M		test/test_common/test_tensors.cc
M		test/test_fe_engine/py_engine/__init__.py
M		test/test_fe_engine/py_engine/py_engine.py
M		test/test_fe_engine/test_fe_engine_gauss_integration.cc
M		test/test_fe_engine/test_fe_engine_precomputation.cc
M		test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_geometry/test_segment_intersection_tetrahedron_4.cc
M		test/test_gtest_main.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_mesh/test_mesh_periodic.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_model/patch_tests/patch_test_linear_anisotropic.cc
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/test_common/test_dof_manager.cc
M		test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
M		test/test_model/test_common/test_model_solver/test_model_solver.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.py
M		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/CMakeLists.txt
M		test/test_model/test_common/test_non_local_toolbox/my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/plot_neighborhoods.py
M		test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
M		test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/material_elastic.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_linear_elastic_potential_energy.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/py_mazars.py
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
A		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_large_rotation.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
M		test/test_python_interface/CMakeLists.txt
M		test/test_python_interface/test_pybind.py
M		test/test_solver/test_solver_petsc.cc
M		test/test_solver/test_sparse_matrix_product.cc
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/test_communicator.cc
M		test/test_synchronizer/test_data_distribution.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_node_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc
A	(dir)	third-party/akantu_iterators/
A		third-party/akantu_iterators/.arcconfig
A		third-party/akantu_iterators/.arclint
A		third-party/akantu_iterators/.clang-format
A		third-party/akantu_iterators/.clang-tidy
P		third-party/akantu_iterators/.gitignore Copied from .gitignore
A	(dir)	third-party/akantu_iterators/.linters/
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/
A		third-party/akantu_iterators/.linters/clang-format-linter/.arclint
A		third-party/akantu_iterators/.linters/clang-format-linter/.gitignore
A		third-party/akantu_iterators/.linters/clang-format-linter/LICENSE
A		third-party/akantu_iterators/.linters/clang-format-linter/README.md
A		third-party/akantu_iterators/.linters/clang-format-linter/__phutil_library_init__.php
A		third-party/akantu_iterators/.linters/clang-format-linter/__phutil_library_map__.php
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/lint/
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/lint/linter/
A		third-party/akantu_iterators/.linters/clang-format-linter/lint/linter/ClangFormatLinter.php
A		third-party/akantu_iterators/CMakeLists.txt
A		third-party/akantu_iterators/COPYING
A		third-party/akantu_iterators/COPYING.lesser
A		third-party/akantu_iterators/Jenkinsfile
A	(dir)	third-party/akantu_iterators/cmake/
A		third-party/akantu_iterators/cmake/AkantuIteratorsTools.cmake
A		third-party/akantu_iterators/cmake/GTest.cmake
A	(dir)	third-party/akantu_iterators/include/
A		third-party/akantu_iterators/include/aka_compatibilty_with_cpp_standard.hh
V		{third-party/akantu_iterators/include ← src/common}/aka_iterators.hh
V		{third-party/akantu_iterators/include ← src/common}/aka_static_if.hh
A		third-party/akantu_iterators/include/aka_tuple_tools.hh
A	(dir)	third-party/akantu_iterators/test/
A		third-party/akantu_iterators/test/CMakeLists.txt
A	(dir)	third-party/akantu_iterators/test/ci/
A		third-party/akantu_iterators/test/ci/.arcconfig
A		third-party/akantu_iterators/test/ci/.arclint
P		third-party/akantu_iterators/test/ci/Dockerfile Copied from test/ci/Dockerfile
A	(dir)	third-party/akantu_iterators/test/ci/scripts/
A		third-party/akantu_iterators/test/ci/scripts/COPYING
A		third-party/akantu_iterators/test/ci/scripts/COPYING.lesser
A	(dir)	third-party/akantu_iterators/test/ci/scripts/harbomaster/
P		third-party/akantu_iterators/test/ci/scripts/harbomaster/__init__.py Copied from test/ci/scripts/harbomaster/__init__.py
P		third-party/akantu_iterators/test/ci/scripts/harbomaster/arclint.py Copied from test/ci/scripts/harbomaster/arclint.py
P		third-party/akantu_iterators/test/ci/scripts/harbomaster/hbm.py Copied from test/ci/scripts/harbomaster/hbm.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/results.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/testresults.py
P		third-party/akantu_iterators/test/ci/scripts/hbm Copied from test/ci/scripts/hbm
P		third-party/akantu_iterators/test/test_iterators.cc Copied from test/test_common/test_iterators.cc
A		third-party/cmake/akantu_iterators.cmake
M		third-party/cmake/gtest.cmake