Merge branch 'master' of lsmssrv1.epfl.ch:akantu
9b096fe6ea59
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Authored by corrado on Sep 23 2015, 11:24.

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Merge branch 'master' of lsmssrv1.epfl.ch:akantu

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Sep 23 2015, 11:24

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richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

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rAKAa5d41cf14191: modification to avoid to call computeEnergy inside the Newton-Raphson loop in…
rAKAe6f7a42d3f70: Merge branch 'master' of lsmssrv1.epfl.ch:akantu

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corrado committed rAKA9b096fe6ea59: Merge branch 'master' of lsmssrv1.epfl.ch:akantu (authored by corrado).Sep 23 2015, 11:24

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
e6f7a42d3f70	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 23 2015
ddb11f4fca12	Marco Vocialta	Compilation fix when igfem is disabled	Sep 21 2015
a8ae9943ca51	Marco Vocialta	Adding a few comments in the dumper	Sep 21 2015
c4eea3cc3071	Marco Vocialta	First step in the parallelism of the geometry	Sep 21 2015
26d5e21b07fe	corrado	added test_buildfacets_mixed2d	Sep 19 2015
e5cca7a518d6	corrado	added tests to check buildfacets in 3D models with two kinds of elements	Sep 19 2015
9cac9ff7b0b2	Marco Vocialta	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 18 2015
27c7f7d382f9	Marco Vocialta	Function to assign a node type to segments	Sep 18 2015
b26d058c9f3f	corrado	added tests to check buildfacets for triangle 3 and 6, quadrangle 4 and 8	Sep 18 2015
1f88d6b612c4	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 18 2015
96709407ab1d	corrado	little modifications to test_buildfacets_hexahedron_20	Sep 18 2015
00c1ab001de6	richart	Bug fix for parallel implicit	Sep 18 2015
20e4910703eb	richart	Bug fix linked to dumper renaming	Sep 18 2015
1af5e3024769	corrado	added test to check build facets for hexa_20	Sep 17 2015
5f426169260c	richart	Adding callback system on external packages (in particular to inject code on…	Sep 17 2015
5e110ec4d5b6	Marco Vocialta	Renaming another file in the dumper	Sep 17 2015
eceebe2143b6	Marco Vocialta	Cleaning the dead code in the dumper	Sep 17 2015
6657593e1e9f	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 16 2015
d19700219792	corrado	added shape functions and derivatives for Pentahedron_15 in the user manual	Sep 16 2015
847e1ffc17ec	Marco Vocialta	Documenting the FragmentManager in the user manual	Sep 16 2015
6d7b9bbecc13	corrado	fixed bug come out in my last commit	Sep 15 2015
170d15b5c744	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 15 2015
7119d8dc6936	corrado	changing name of mesh_pbc.cc into mesh_utils_pbc.cc	Sep 15 2015
5e05d80cfd69	Marco Vocialta	Correcting the number of nodes per facet for some cohesive elements	Sep 14 2015
9abadf8e0939	Marco Vocialta	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 14 2015
9361a44a8502	Marco Vocialta	Fixing tabulation in material_cohesive_linear_fatigue.cc	Sep 14 2015
9c5d40ab8ed5	corrado	cleaning in the file mesh_pbc.cc	Sep 14 2015
40dab70d8882	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Sep 12 2015
e5b4f7fd6a8c	corrado	modifications in mesh_utils.cc to correctly insert facets in case of meshes…	Sep 12 2015
3c343014ee61	corrado	improvement of the cohesive material selector	Sep 8 2015
09778daafad1	corrado	fixed bug in the definition of the facets connectivity of hexa_20	Sep 5 2015
bcf1118883f0	corrado	added 8- and 16-nodes 3D quadrangular cohesive elements	Sep 5 2015
8a3b9afe2828	Okan	merged	Sep 4 2015
9d2fa3941813	Okan	interpolation from control points: bug solved for multi material case	Sep 4 2015
8f89b975d5b5	richart	Changes in comments to address ticket #44 [close #44]	Sep 4 2015
df9a20e8e19d	corrado	typo correction and code cleaning	Sep 1 2015
de5ac0fb290f	corrado	orthotropic test moved into the test_materials folder	Sep 1 2015
50d8507655b0	corrado	added shape functions and derivatives for Hexa20 and Penta6 in the user manual	Sep 1 2015
4a7e8eab44ea	richart	Merge branch 'master' of gitolite-richart:akantu	Aug 31 2015
e26d605668c5	richart	Adding doc on dumper to close #59 + compilation correction in doc and examples	Aug 31 2015
2bd4c545c531	richart	Changed their c++ standard to avoid <<>> in templates	Aug 31 2015
63c3fd0a6673	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Aug 28 2015
67a8257331f1	corrado	fixed bug in test_fe_engine_precomputation_pentahedron_6	Aug 28 2015
28bc2bbe35ab	fabarras	Merge branch 'tickets45'	Aug 28 2015
548dfbcb0170	fabarras	final commit for move of interpolateElementalFieldFromControlPoints	Aug 28 2015
5180bcf7bd27	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Aug 28 2015
8186e8a1fe39	corrado	modifying the user manual	Aug 28 2015
140331d6f9b2	fabarras	move of elemental field interpolation to FEEngine	Aug 27 2015
8cb650db55ce	fabarras	move of computeQuadraturePointsCoordinates in FEEngine	Aug 26 2015
069d157a5471	Aurelia Cuba Ramos	Factorization and documentation of weight functions for non-local damage	Aug 24 2015

Changes (506)
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This commit is very large. Load each file individually.

		Path
A		.clang-format
M		CMakeLists.txt
M		cmake/AkantuConfig.cmake.in
A		cmake/AkantuExamplesMacros.cmake
M		cmake/AkantuInstall.cmake
M		cmake/AkantuMacros.cmake
A		cmake/AkantuPackagesSystem.cmake
V		cmake/{AkantuTestAndExamples.cmake → AkantuTestsMacros.cmake}
V		cmake/{AkantuTestsMacros.cmake ← AkantuTestAndExamples.cmake}
M		cmake/AkantuUse.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
A		cmake/Modules/CMakePackagesSystemGlobalFunctions.cmake
A		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
M		cmake/akantu_diff.sh
A		doc/coding_convention/akantu-input-mode.el
M		doc/manual/CMakeLists.txt
M		doc/manual/manual-appendix-elements.tex
M		doc/manual/manual-appendix-materials-cohesive.tex
M		doc/manual/manual-appendix-materials.tex
M		doc/manual/manual-bibliography.bib
M		doc/manual/manual-cohesive_elements_insertion.tex
M		doc/manual/manual-cohesive_laws.tex
M		doc/manual/manual-constitutive-laws.tex
M		doc/manual/manual-heattransfermodel.tex
M		doc/manual/manual-io.tex
M		doc/manual/manual-solidmechanicsmodel.tex
M		doc/manual/manual-structuralmechanicsmodel.tex
M		doc/manual/manual.sty
M		doc/manual/manual.tex
A		doc/manual/version-definition.tex.in
M		examples/CMakeLists.txt
M		examples/explicit/explicit_dynamic.cc
A	(dir)	examples/io/
P		examples/io/CMakeLists.txt Copied from packages/boost.cmake
A	(dir)	examples/io/dumper/
P		examples/io/dumper/CMakeLists.txt Copied from test/test_mesh_utils/test_buildfacets/CMakeLists.txt
A		examples/io/dumper/dumpable_interface.cc
A		examples/io/dumper/dumper_low_level.cc
A		examples/io/dumper/locomotive_tools.cc
V		{examples/io/dumper/locomotive_tools.hh ← src/model/solid_mechanics/materials/weight_function.cc}
A		examples/io/dumper/swiss_train.geo
M		examples/new_material/local_material_damage.hh
M		examples/new_material/local_material_damage_inline_impl.cc
M		examples/new_material/new_local_material.cc
M	(sub)	extra_packages/extra-materials
M	(sub)	extra_packages/igfem
M	(sub)	extra_packages/parallel-cohesive-element
M	(sub)	extra_packages/students-extra-package
M	(sub)	extra_packages/traction-at-split-node-contact
P		packages/boost.cmake Copied to examples/io/CMakeLists.txt
M		packages/cgal.cmake
M		packages/cohesive_element.cmake
M		packages/core.cmake
M		packages/core_cxx11.cmake
M		packages/damage_non_local.cmake
M		packages/embedded.cmake
M		packages/iohelper.cmake
M		packages/mpi.cmake
M		packages/petsc.cmake
M		packages/scotch.cmake
M		packages/structural_mechanics.cmake
M		python/CMakeLists.txt
M		python/swig/aka_array.i
M		python/swig/aka_common.i
A		python/swig/aka_csr.i
M		python/swig/akantu.i
A		python/swig/heat_transfer_model.i
M		python/swig/mesh.i
M		python/swig/mesh_utils.i
M		python/swig/model.i
M		python/swig/solid_mechanics_model.i
M		src/CMakeLists.txt
M		src/common/aka_array.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
M		src/common/aka_config.hh.in
D		src/common/aka_element_classes_info.hh
A		src/common/aka_element_classes_info.hh.in
M		src/common/aka_element_classes_info_inline_impl.cc
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_math_tmpl.hh
M		src/common/aka_static_memory_inline_impl.cc
M		src/common/aka_types.hh
M		src/fe_engine/cohesive_element.cc
M		src/fe_engine/cohesive_element.hh
M		src/fe_engine/element_class.cc
M		src/fe_engine/element_class.hh
M		src/fe_engine/element_class_structural.hh
M		src/fe_engine/element_class_tmpl.hh
M		src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
M		src/fe_engine/element_classes/element_class_hexahedron_8_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_inline_impl.cc
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/fe_engine_template_tmpl.hh
D		src/fe_engine/geometrical_data_tmpl.hh
M		src/fe_engine/geometrical_element.cc
M		src/fe_engine/integration_element.cc
M		src/fe_engine/integrator_gauss_inline_impl.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_functions_inline_impl.cc
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_inline_impl.cc
M		src/geometry/aabb_primitives/aabb_primitive.cc
M		src/geometry/aabb_primitives/line_arc.hh
M		src/geometry/geom_helper_functions.hh
P		src/geometry/mesh_abstract_intersector.hh Copied from src/geometry/mesh_geom_intersector.hh
P		src/geometry/mesh_abstract_intersector_tmpl.hh Copied from src/geometry/mesh_geom_intersector_tmpl.hh
M		src/geometry/mesh_geom_abstract.cc
M		src/geometry/mesh_geom_abstract.hh
M		src/geometry/mesh_geom_common.hh
M		src/geometry/mesh_geom_factory.hh
M		src/geometry/mesh_geom_factory_tmpl.hh
P		src/geometry/mesh_geom_intersector.hh Copied to src/geometry/mesh_abstract_intersector.hh
P		src/geometry/mesh_geom_intersector_tmpl.hh Copied to src/geometry/mesh_abstract_intersector_tmpl.hh
D		src/geometry/mesh_geom_spherical_traits.hh
M		src/geometry/mesh_segment_intersector.hh
M		src/geometry/mesh_segment_intersector_tmpl.hh
A		src/geometry/mesh_sphere_intersector.hh
A		src/geometry/mesh_sphere_intersector_tmpl.hh
M		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable_dummy.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumpable_iohelper.hh
D		src/io/dumper/dumper_connectivity_field.hh
M		src/io/dumper/dumper_element_partition.hh
D		src/io/dumper/dumper_element_type.hh
M		src/io/dumper/dumper_elemental_field.hh
M		src/io/dumper/dumper_field.hh
M		src/io/dumper/dumper_filtered_connectivity.hh
M		src/io/dumper/dumper_generic_elemental_field.hh
M		src/io/dumper/dumper_homogenizing_field.hh
V		src/io/dumper/{dumper_internal_material_field.hh ← dumper_material_internal_field.hh}
M		src/io/dumper/dumper_iohelper.cc
D		src/io/dumper/dumper_iterator_helper.hh
V		src/io/dumper/{dumper_material_internal_field.hh → dumper_internal_material_field.hh}
V		src/io/dumper/{dumper_quadrature_point_iterator.hh ← dumper_quadrature_points_field.hh}
V		src/io/dumper/{dumper_quadrature_points_field.hh → dumper_quadrature_point_iterator.hh}
M		src/io/dumper/dumper_type_traits.hh
M		src/io/mesh_io/mesh_io_abaqus.cc
P		src/io/mesh_io/mesh_io_abaqus.hh Copied to src/model/solid_mechanics/material_list.hh.in
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/parser/parsable.cc
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map_filter.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
A		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_inline_impl.cc
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
M		src/mesh_utils/mesh_partition.hh
V		src/mesh_utils/{mesh_pbc.cc → mesh_utils_pbc.cc}
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
V		src/mesh_utils/{mesh_utils_pbc.cc ← mesh_pbc.cc}
M		src/model/boundary_condition_functor.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/model.cc
M		src/model/model.hh
M		src/model/solid_mechanics/embedded_interface_intersector.cc
M		src/model/solid_mechanics/embedded_interface_intersector.hh
M		src/model/solid_mechanics/embedded_interface_model.cc
M		src/model/solid_mechanics/embedded_interface_model.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
V		src/model/solid_mechanics/{material_list.hh → materials/material_core_includes.hh}
P		src/model/solid_mechanics/material_list.hh.in Copied from src/io/mesh_io/mesh_io_abaqus.hh
V		src/model/solid_mechanics/{material_random_internal.hh → materials/weight_functions/damaged_weight_function.hh}
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_bilinear.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_exponential.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_fatigue.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_fatigue.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_inline_impl.cc
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.cc
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.hh
V		src/model/solid_mechanics/{materials/material_core_includes.hh ← material_list.hh}
M		src/model/solid_mechanics/materials/material_damage/material_marigo.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
M		src/model/solid_mechanics/materials/material_embedded/embedded_internal_field.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.cc
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_inline_impl.cc
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_template.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_template_tmpl.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_non_local.hh
M		src/model/solid_mechanics/materials/material_non_local_includes.hh
M		src/model/solid_mechanics/materials/material_non_local_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
V		{src/model/solid_mechanics/materials/weight_function.cc → examples/io/dumper/locomotive_tools.hh}
D		src/model/solid_mechanics/materials/weight_function.hh
V		src/model/solid_mechanics/materials/{weight_function_tmpl.hh → weight_functions/stress_based_weight_function_inline_impl.cc}
A	(dir)	src/model/solid_mechanics/materials/weight_functions/
A		src/model/solid_mechanics/materials/weight_functions/base_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/base_weight_function_inline_impl.cc
V		src/model/solid_mechanics/{materials/weight_functions/damaged_weight_function.hh ← material_random_internal.hh}
A		src/model/solid_mechanics/materials/weight_functions/damaged_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
V		src/model/solid_mechanics/materials/{weight_functions/stress_based_weight_function_inline_impl.cc ← weight_function_tmpl.hh}
A		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_inline_impl.cc
M		src/solver/petsc_matrix.cc
M		src/solver/petsc_wrapper.hh
M		src/solver/sparse_matrix.hh
M		src/solver/static_solver.cc
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/mpi_type_wrapper.hh
M		src/synchronizer/static_communicator.hh
M		src/synchronizer/static_communicator_dummy.hh
M		src/synchronizer/static_communicator_inline_impl.hh
M		src/synchronizer/static_communicator_mpi.cc
M		src/synchronizer/static_communicator_mpi.hh
M		test/CMakeLists.txt
M		test/test_common/test_grid.cc
A	(dir)	test/test_fe_engine/
V		test/{test_fe_engine ← test_fem}/CMakeLists.txt
V		test/{test_fe_engine ← test_fem}/_b_beam_2.msh
V		test/{test_fe_engine ← test_fem}/_hexahedron_20.msh
V		test/{test_fe_engine ← test_fem}/_hexahedron_8.msh
V		test/{test_fe_engine ← test_fem}/_pentahedron_15.msh
V		test/{test_fe_engine ← test_fem}/_pentahedron_6.msh
V		test/{test_fe_engine ← test_fem}/_quadrangle_4.msh
V		test/{test_fe_engine ← test_fem}/_quadrangle_8.msh
V		test/{test_fe_engine ← test_fem}/_segment_2.msh
V		test/{test_fe_engine ← test_fem}/_segment_3.msh
V		test/{test_fe_engine ← test_fem}/_tetrahedron_10.msh
V		test/{test_fe_engine ← test_fem}/_tetrahedron_4.msh
V		test/{test_fe_engine ← test_fem}/_triangle_3.msh
V		test/{test_fe_engine ← test_fem}/_triangle_6.msh
V		test/{test_fe_engine ← test_fem}/circle.geo
V		test/{test_fe_engine ← test_fem}/cube.geo
V		test/{test_fe_engine ← test_fem}/cube_physical_names.geo
V		test/{test_fe_engine ← test_fem}/generate_test
V		test/{test_fe_engine ← test_fem}/hexa_structured.geo
V		test/{test_fe_engine ← test_fem}/line.geo
V		test/{test_fe_engine ← test_fem}/square.geo
V		test/{test_fe_engine ← test_fem}/square_structured.geo
V		test/{test_fe_engine ← test_fem}/test_facet_element_mapping.cc
P		test/test_fe_engine/test_fe_engine_precomputation.cc Copied from test/test_fem/test_interpolate.cc
A		test/test_fe_engine/test_fe_engine_precomputation_hexahedron_20.verified
A		test/test_fe_engine/test_fe_engine_precomputation_hexahedron_8.verified
A		test/test_fe_engine/test_fe_engine_precomputation_pentahedron_15.verified
A		test/test_fe_engine/test_fe_engine_precomputation_pentahedron_6.verified
A		test/test_fe_engine/test_fe_engine_precomputation_quadrangle_4.verified
A		test/test_fe_engine/test_fe_engine_precomputation_quadrangle_8.verified
A		test/test_fe_engine/test_fe_engine_precomputation_segment_2.verified
A		test/test_fe_engine/test_fe_engine_precomputation_segment_3.verified
A		test/test_fe_engine/test_fe_engine_precomputation_tetrahedron_10.verified
A		test/test_fe_engine/test_fe_engine_precomputation_tetrahedron_4.verified
A		test/test_fe_engine/test_fe_engine_precomputation_triangle_3.verified
A		test/test_fe_engine/test_fe_engine_precomputation_triangle_6.verified
V		test/{test_fe_engine ← test_fem}/test_gradient.cc
A		test/test_fe_engine/test_gradient_hexahedron_20.verified
A		test/test_fe_engine/test_gradient_hexahedron_8.verified
A		test/test_fe_engine/test_gradient_quadrangle_4.verified
A		test/test_fe_engine/test_gradient_quadrangle_8.verified
A		test/test_fe_engine/test_gradient_segment_2.verified
A		test/test_fe_engine/test_gradient_segment_3.verified
A		test/test_fe_engine/test_gradient_tetrahedron_10.verified
A		test/test_fe_engine/test_gradient_tetrahedron_4.verified
A		test/test_fe_engine/test_gradient_triangle_3.verified
A		test/test_fe_engine/test_gradient_triangle_6.verified
V		test/{test_fe_engine ← test_fem}/test_integrate.cc
A		test/test_fe_engine/test_integrate_hexahedron_20.verified
A		test/test_fe_engine/test_integrate_hexahedron_8.verified
A		test/test_fe_engine/test_integrate_quadrangle_4.verified
A		test/test_fe_engine/test_integrate_quadrangle_8.verified
A		test/test_fe_engine/test_integrate_segment_2.verified
A		test/test_fe_engine/test_integrate_segment_3.verified
A		test/test_fe_engine/test_integrate_tetrahedron_10.verified
A		test/test_fe_engine/test_integrate_tetrahedron_4.verified
A		test/test_fe_engine/test_integrate_triangle_3.verified
A		test/test_fe_engine/test_integrate_triangle_6.verified
V		test/{test_fe_engine ← test_fem}/test_interpolate.cc
V		test/{test_fe_engine ← test_fem}/test_interpolate_bernoulli_beam_2.cc
V		test/{test_fe_engine ← test_fem}/test_interpolate_bernoulli_beam_2.verified
A		test/test_fe_engine/test_interpolate_hexahedron_20.verified
A		test/test_fe_engine/test_interpolate_hexahedron_8.verified
A		test/test_fe_engine/test_interpolate_quadrangle_4.verified
A		test/test_fe_engine/test_interpolate_quadrangle_8.verified
A		test/test_fe_engine/test_interpolate_segment_2.verified
A		test/test_fe_engine/test_interpolate_segment_3.verified
A		test/test_fe_engine/test_interpolate_tetrahedron_10.verified
A		test/test_fe_engine/test_interpolate_tetrahedron_4.verified
A		test/test_fe_engine/test_interpolate_triangle_3.verified
A		test/test_fe_engine/test_interpolate_triangle_6.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map.cc
V		test/{test_fe_engine ← test_fem}/test_inverse_map_hexahedron_20.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_hexahedron_8.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_quadrangle_4.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_quadrangle_8.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_segment_2.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_segment_3.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_tetrahedron_10.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_tetrahedron_4.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_triangle_3.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_triangle_6.verified
V		test/{test_fe_engine ← test_fem}/test_mesh_boundary.cc
V		test/{test_fe_engine ← test_fem}/test_mesh_data.cc
D		test/test_fem
V		test/{test_fem → test_fe_engine}/CMakeLists.txt
V		test/{test_fem → test_fe_engine}/_b_beam_2.msh
V		test/{test_fem → test_fe_engine}/_hexahedron_20.msh
V		test/{test_fem → test_fe_engine}/_hexahedron_8.msh
V		test/{test_fem → test_fe_engine}/_pentahedron_15.msh
V		test/{test_fem → test_fe_engine}/_pentahedron_6.msh
V		test/{test_fem → test_fe_engine}/_quadrangle_4.msh
V		test/{test_fem → test_fe_engine}/_quadrangle_8.msh
V		test/{test_fem → test_fe_engine}/_segment_2.msh
V		test/{test_fem → test_fe_engine}/_segment_3.msh
V		test/{test_fem → test_fe_engine}/_tetrahedron_10.msh
V		test/{test_fem → test_fe_engine}/_tetrahedron_4.msh
V		test/{test_fem → test_fe_engine}/_triangle_3.msh
V		test/{test_fem → test_fe_engine}/_triangle_6.msh
V		test/{test_fem → test_fe_engine}/circle.geo
V		test/{test_fem → test_fe_engine}/cube.geo
V		test/{test_fem → test_fe_engine}/cube_physical_names.geo
V		test/{test_fem → test_fe_engine}/generate_test
V		test/{test_fem → test_fe_engine}/hexa_structured.geo
V		test/{test_fem → test_fe_engine}/line.geo
V		test/{test_fem → test_fe_engine}/square.geo
V		test/{test_fem → test_fe_engine}/square_structured.geo
V		test/{test_fem → test_fe_engine}/test_facet_element_mapping.cc
V		test/{test_fem → test_fe_engine}/test_gradient.cc
D		test/test_fem/test_gradient_hexahedron_20.verified
D		test/test_fem/test_gradient_hexahedron_8.verified
D		test/test_fem/test_gradient_quadrangle_4.verified
D		test/test_fem/test_gradient_quadrangle_8.verified
D		test/test_fem/test_gradient_segment_2.verified
D		test/test_fem/test_gradient_segment_3.verified
D		test/test_fem/test_gradient_tetrahedron_10.verified
D		test/test_fem/test_gradient_tetrahedron_4.verified
D		test/test_fem/test_gradient_triangle_3.verified
D		test/test_fem/test_gradient_triangle_6.verified
V		test/{test_fem → test_fe_engine}/test_integrate.cc
D		test/test_fem/test_integrate_hexahedron_20.verified
D		test/test_fem/test_integrate_hexahedron_8.verified
D		test/test_fem/test_integrate_quadrangle_4.verified
D		test/test_fem/test_integrate_quadrangle_8.verified
D		test/test_fem/test_integrate_segment_2.verified
D		test/test_fem/test_integrate_segment_3.verified
D		test/test_fem/test_integrate_tetrahedron_10.verified
D		test/test_fem/test_integrate_tetrahedron_4.verified
D		test/test_fem/test_integrate_triangle_3.verified
D		test/test_fem/test_integrate_triangle_6.verified
P		test/test_fem/test_interpolate.cc Deleted after being copied to multiple locations: test/test_fe_engine/test_fe_engine_precomputation.cc test/test_fe_engine/test_interpolate.cc
V		test/{test_fem → test_fe_engine}/test_interpolate_bernoulli_beam_2.cc
V		test/{test_fem → test_fe_engine}/test_interpolate_bernoulli_beam_2.verified
D		test/test_fem/test_interpolate_hexahedron_20.verified
D		test/test_fem/test_interpolate_hexahedron_8.verified
D		test/test_fem/test_interpolate_quadrangle_4.verified
D		test/test_fem/test_interpolate_quadrangle_8.verified
D		test/test_fem/test_interpolate_segment_2.verified
D		test/test_fem/test_interpolate_segment_3.verified
D		test/test_fem/test_interpolate_tetrahedron_10.verified
D		test/test_fem/test_interpolate_tetrahedron_4.verified
D		test/test_fem/test_interpolate_triangle_3.verified
D		test/test_fem/test_interpolate_triangle_6.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map.cc
V		test/{test_fem → test_fe_engine}/test_inverse_map_hexahedron_20.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_hexahedron_8.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_quadrangle_4.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_quadrangle_8.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_segment_2.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_segment_3.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_tetrahedron_10.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_tetrahedron_4.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_triangle_3.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_triangle_6.verified
V		test/{test_fem → test_fe_engine}/test_mesh_boundary.cc
V		test/{test_fem → test_fe_engine}/test_mesh_data.cc
M		test/test_geometry/CMakeLists.txt
M		test/test_geometry/test_geometry_intersection.cc
V		test/test_geometry/{test_geometry_intersection_tetrahedron_4.cc → test_segment_intersection_tetrahedron_4.cc}
V		test/test_geometry/{test_geometry_intersection_triangle_3.cc → test_segment_intersection_triangle_3.cc}
V		test/test_geometry/{test_segment_intersection_tetrahedron_4.cc ← test_geometry_intersection_tetrahedron_4.cc}
V		test/test_geometry/{test_segment_intersection_triangle_3.cc ← test_geometry_intersection_triangle_3.cc}
M		test/test_mesh_utils/CMakeLists.txt
A	(sym)	test/test_mesh_utils/test_buildfacets/.#test_buildfacets_hexahedron_20.cc
P		test/test_mesh_utils/test_buildfacets/CMakeLists.txt Copied to multiple locations: examples/io/dumper/CMakeLists.txt test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/CMakeLists.txt
V		test/test_mesh_utils/test_buildfacets/{hexahedron.msh → hexahedron_8.msh}
A		test/test_mesh_utils/test_buildfacets/hexahedron_20.msh
V		test/test_mesh_utils/test_buildfacets/{hexahedron_8.msh ← hexahedron.msh}
A		test/test_mesh_utils/test_buildfacets/mixed2d_linear.msh
A		test/test_mesh_utils/test_buildfacets/mixed2d_quadratic.msh
A		test/test_mesh_utils/test_buildfacets/mixed3d_linear.msh
A		test/test_mesh_utils/test_buildfacets/mixed3d_quadratic.msh
A		test/test_mesh_utils/test_buildfacets/quadrangle_4.msh
A		test/test_mesh_utils/test_buildfacets/quadrangle_8.msh
D		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_linear.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_linear.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_quadratic.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_quadratic.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_linear.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_linear.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_quadratic.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_quadratic.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_4.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_4.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_8.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_8.verified
D		test/test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron_10.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron_10.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_3.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_3.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_6.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_6.verified
V		test/test_mesh_utils/test_buildfacets/{tetrahedron.msh → tetrahedron_10.msh}
V		test/test_mesh_utils/test_buildfacets/{tetrahedron_10.msh ← tetrahedron.msh}
A		test/test_mesh_utils/test_buildfacets/triangle_3.msh
A		test/test_mesh_utils/test_buildfacets/triangle_6.msh
A	(dir)	test/test_mesh_utils/test_segment_nodetype/
A		test/test_mesh_utils/test_segment_nodetype/CMakeLists.txt
A		test/test_mesh_utils/test_segment_nodetype/mesh.geo
A		test/test_mesh_utils/test_segment_nodetype/mesh.msh
A		test/test_mesh_utils/test_segment_nodetype/test_segment_nodetype.cc
A		test/test_mesh_utils/test_segment_nodetype/test_segment_nodetype.sh
M		test/test_model/test_heat_transfer_model/CMakeLists.txt
A		test/test_model/test_heat_transfer_model/test_heat_transfer_model_square2d_implicit.cc
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
V		test/test_model/test_solid_mechanics_model/{ → test_materials}/orthotropic.dat
M		test/test_model/test_solid_mechanics_model/patch_tests/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/patch_tests/colone_weight.cc
A		test/test_model/test_solid_mechanics_model/patch_tests/data/_pentahedron_15.msh
M		test/test_model/test_solid_mechanics_model/patch_tests/data/material_anisotropic.dat
M		test/test_model/test_solid_mechanics_model/patch_tests/explicit/patch_test_explicit.cc
M		test/test_model/test_solid_mechanics_model/patch_tests/explicit/patch_test_explicit_anisotropic.cc
M		test/test_model/test_solid_mechanics_model/patch_tests/implicit/patch_test_implicit.cc
M		test/test_model/test_solid_mechanics_model/patch_tests/lumped_mass/test_lumped_mass.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/material.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_fatigue.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.cc
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.sh
A	(dir)	test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/3d_spherical_inclusion.geo
P		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/CMakeLists.txt Copied from test/test_mesh_utils/test_buildfacets/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/input_file.dat
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/barre_trou.geo
M		test/test_model/test_solid_mechanics_model/test_materials/material.dat
A		test/test_model/test_solid_mechanics_model/test_materials/mesh_section_gap.geo
V		test/test_model/test_solid_mechanics_model/{test_materials ← }/orthotropic.dat
M		test/test_model/test_solid_mechanics_model/test_materials/square.geo
P		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc Copied from test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_damage_non_local.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/mesh_section_gap.geo
P		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_damage_non_local.cc Copied to test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_non_local.cc
V		test/test_model/test_solid_mechanics_model/{test_materials/test_material_orthotropic.cc ← test_solid_mechanics_model_orthotropic.cc}
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d_parallel.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d_structured.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d_structured_pbc.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_circle_2.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_cube3d.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_cube3d_pbc.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_cube3d_tetra10.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
V		test/test_model/test_solid_mechanics_model/{test_solid_mechanics_model_orthotropic.cc → test_materials/test_material_orthotropic.cc}
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_segment_parallel.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_square.cc
M		test/test_solver/test_petsc_matrix_diagonal.cc
M		third-party/cmake/scotch.cmake
M		third-party/scotch_5.1.12b_make.inc.cmake