Diffusion akantu 9fc3d77b8df2

Merge branch 'master' of lsmssrv1.epfl.ch:akantu-students
9fc3d77b8df2
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Authored by molyneau on Jun 1 2015, 23:09.

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Merge branch 'master' of lsmssrv1.epfl.ch:akantu-students

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Committed

molyneau

Jun 1 2015, 23:09

Pushed

richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

Parents

rAKA0e3936d17c94: Merge branch 'master' of lsmssrv1.epfl.ch:akantu-students
rAKA830bd1ec0495: final version of RGIB model

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molyneau committed rAKA9fc3d77b8df2: Merge branch 'master' of lsmssrv1.epfl.ch:akantu-students (authored by molyneau).Jun 1 2015, 23:09

Restricted Application failed to build Restricted Buildable!Dec 6 2019, 13:44

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
0e3936d17c94	Lucas Frérot	Merge branch 'master' of lsmssrv1.epfl.ch:akantu-students	Jun 1 2015
1e477125e7eb	Lucas Frérot	opened the possibility for finer initialization of material internals	Jun 1 2015
02dd97743c6d	anciaux	in meshio remove a function to be implemented: replaced with the mother default…	Jun 1 2015
ffd11cacaefc	anciaux	render the creation of meshio static	Jun 1 2015
fc32600c244b	anciaux	correct an invalid output message	Jun 1 2015
a3b2178bf109	anciaux	meshio printself now exists	Jun 1 2015
ebfdde1c3adc	anciaux	temporary changes over meshio diana	Jun 1 2015
7f680ecc426f	anciaux	Merge branch 'master' of gitolite:akantu	May 29 2015
b8b6a0e28385	anciaux	fix the diana meshio	May 29 2015
f98c780492fc	corrado	problem of memory leak solved in material_cohesive_linear	May 29 2015
ecf274c1ee81	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 29 2015
4fe603b63edd	corrado	merge conflict solved	May 29 2015
0d49513d7d24	Lucas Frérot	modified MaterialReinforcementTemplate for plasticity	May 29 2015
30ca1c71e349	Lucas Frérot	fixed linear isotropic hardening law for 1D	May 29 2015
432515bb39c8	anciaux	Merge branch 'master' of gitolite:akantu	May 28 2015
89412ac018dd	anciaux	add feature to the nodal group	May 28 2015
0cdecba16166	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 28 2015
10723dd1dd23	richart	Modification of the test treatement to allow multiple package for a given test…	May 28 2015
2790cf34bb48	richart	Correction for the policy CMP0054 http://www.cmake.org/cmake/help/v3.	May 28 2015
fd46013cf7e5	Lucas Frérot	added check on field in flattenInternal	May 27 2015
b1a0f8bfaa8e	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 22 2015
1b77121e3028	corrado	bug fix for the heat transfer model with more than one type of element	May 22 2015
2f556673d3fe	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 22 2015
989b0c78b83d	richart	adding an initialize that thakes sys.argv + bug fix in mesh.i for facet local…	May 22 2015
c4444232df4a	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 19 2015
19c3fe6cc0fd	corrado	bugfix in the test for assembling the stiffness matrix of cohesive elements	May 19 2015
203ddd8daaa4	richart	debug information in parsers: activated in debug and debug level dblDebug(42)	May 19 2015
67cd01d8270e	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 19 2015
aa63f530fd63	richart	debug information in parsers: activated in debug and debug level dblDebug(42)	May 19 2015
70007b7a1ff6	Lucas Frérot	fixed bug in intersection mesh generation	May 19 2015
ed8faf781ff2	richart	added some debug capabilities to the parser of vector and matrices: sligth…	May 18 2015
66662f935dd2	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 18 2015
225022bf69b2	richart	bug fix in the copy of proxy in proxy, made it imposible to create proxy not…	May 18 2015
37e93a2d55f3	richart	minor change in the direction of being net independent	May 18 2015
fa8b5022eca0	richart	debug test mesh partitionate: numeric_limits::min != numeric_limits::epsilon	May 18 2015
e9889bad35e3	Marco Vocialta	Substituting the geo file of the test cohesive fatigue with an msh file to…	May 18 2015
aebcc7ceba71	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 18 2015
31e84809acea	anciaux	Merge lsmssrv1:akantu into HEAD	May 17 2015
eaf6b70f98a4	anciaux	adapt for the case when IOHelper is not activated	May 17 2015
e316cd6692d1	corrado	bugfix in tests for hexahedron 20 + added tests for pentahedron 6 and 15	May 16 2015
da58189f58bb	anciaux	bug fix for the dumper with multiple elements	May 15 2015
d5684173cda3	Marco Vocialta	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 15 2015
ad1abb89d9f7	Marco Vocialta	Deleting the test_surface_extraction and test_facet_extraction because they…	May 15 2015
f6663ebb3f8d	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 15 2015
9f7fb7ef76dc	richart	Modification in aka types + adding a test for the same file	May 15 2015
5113d7dc2893	richart	Merge branch 'eesd', Factorizing code and adding minor opertators	May 15 2015
9d3b1dd615b1	richart	factorazing computation of tangents	May 15 2015
eb0c038f2372	richart	Bug fix due to split of precompute jacobian and multiply by weigth	May 15 2015
577112d45c86	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 15 2015
5cbd215af831	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	May 15 2015

Changes (215)
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This commit is very large. Load each file individually.

		Path
M		cmake/AkantuTestAndExamples.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/FindPETSc.cmake
M		doc/manual/CMakeLists.txt
M		doc/manual/manual-heattransfermodel.tex
M		doc/manual/manual-parallel.tex
M		doc/manual/manual-structuralmechanicsmodel.tex
M		doc/manual/manual.sty
M		doc/manual/manual.tex
M	(sub)	extra_packages/extra-materials
M	(sub)	extra_packages/parallel-cohesive-element
M		packages/cgal.cmake
M		packages/embedded.cmake
M		python/CMakeLists.txt
M		python/swig/aka_common.i
M		python/swig/mesh.i
M		src/common/aka_array.hh
M		src/common/aka_common_inline_impl.cc
M		src/common/aka_config.hh.in
M		src/common/aka_math.cc
M		src/common/aka_math.hh
M		src/common/aka_types.hh
M		src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/integration_element.cc
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.cc
M		src/geometry/aabb_primitives/aabb_primitive.hh
M		src/geometry/aabb_primitives/tetrahedron.hh
D		src/geometry/aabb_primitives/tetrahedron_tmpl.hh
M		src/geometry/aabb_primitives/triangle.hh
D		src/geometry/aabb_primitives/triangle_tmpl.hh
M		src/geometry/geom_helper_functions.hh
M		src/geometry/mesh_geom_abstract.hh
A		src/geometry/mesh_geom_common.hh
D		src/geometry/mesh_geom_container.cc
D		src/geometry/mesh_geom_container.hh
M		src/geometry/mesh_geom_factory.hh
M		src/geometry/mesh_geom_factory_tmpl.hh
A		src/geometry/mesh_geom_intersector.hh
A		src/geometry/mesh_geom_intersector_tmpl.hh
A		src/geometry/mesh_segment_intersector.hh
A		src/geometry/mesh_segment_intersector_tmpl.hh
M		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumper_element_iterator.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_diana.cc
M		src/io/mesh_io/mesh_io_diana.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/parser/algebraic_parser.hh
M		src/io/parser/input_file_parser.hh
M		src/io/parser/parser.cc
M		src/io/parser/parser_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/mesh.cc
M		src/mesh/mesh_inline_impl.cc
M		src/mesh/node_group.hh
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
M		src/model/boundary_condition_functor.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/model.cc
M		src/model/model.hh
D		src/model/solid_mechanics/embedded_interface.cc
D		src/model/solid_mechanics/embedded_interface.hh
A		src/model/solid_mechanics/embedded_interface_intersector.cc
A		src/model/solid_mechanics/embedded_interface_intersector.hh
M		src/model/solid_mechanics/embedded_interface_model.cc
M		src/model/solid_mechanics/embedded_interface_model.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/material_selector.hh
M		src/model/solid_mechanics/material_selector_tmpl.hh
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_fatigue.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_fatigue.hh
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.hh
M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_embedded/embedded_internal_field.hh
M		src/model/solid_mechanics/materials/material_embedded/material_embedded_includes.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.cc
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_template.hh
V		src/model/solid_mechanics/materials/material_embedded/{material_reinforcement_template_inline_impl.cc → material_reinforcement_template_tmpl.hh}
V		src/model/solid_mechanics/materials/material_embedded/{material_reinforcement_template_tmpl.hh ← material_reinforcement_template_inline_impl.cc}
M		src/model/solid_mechanics/materials/material_non_local_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox_tmpl.hh
M		src/model/solid_mechanics/materials/weight_function.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_inline_impl.cc
M		src/solver/petsc_matrix.cc
M		src/solver/solver.cc
M		src/solver/solver_mumps.cc
M		src/solver/solver_petsc.cc
M		src/solver/static_solver.cc
M		src/synchronizer/distributed_synchronizer.cc
M		test/CMakeLists.txt
M		test/test_common/CMakeLists.txt
A		test/test_common/test_types.cc
M		test/test_fem/CMakeLists.txt
A		test/test_fem/_pentahedron_15.msh
A		test/test_fem/_pentahedron_6.msh
M		test/test_fem/test_gradient_hexahedron_20.verified
M		test/test_fem/test_integrate_hexahedron_20.verified
M		test/test_fem/test_interpolate_hexahedron_20.verified
M		test/test_fem/test_inverse_map_hexahedron_20.verified
M		test/test_geometry/CMakeLists.txt
M		test/test_geometry/test_geometry_intersection.cc
M		test/test_geometry/test_geometry_intersection_tetrahedron_4.cc
M		test/test_geometry/test_geometry_intersection_triangle_3.cc
M		test/test_geometry/test_geometry_predicates.cc
A		test/test_geometry/test_geometry_tetrahedron.msh
P		test/test_geometry/test_geometry_triangle.msh Copied from test/test_model/test_solid_mechanics_model/test_embedded_interface/triangle.msh
D		test/test_geometry/tetrahedron_4.geo
D		test/test_geometry/triangle_3.geo
M		test/test_io/test_parser/input_file.dat
M		test/test_io/test_parser/test_parser.verified
M		test/test_mesh_utils/CMakeLists.txt
A	(dir)	test/test_mesh_utils/test_buildfacets/
P		test/test_mesh_utils/test_buildfacets/CMakeLists.txt Copied from test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets/CMakeLists.txt
V		test/{test_mesh_utils/test_buildfacets ← test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets}/hexahedron.msh
V		test/{test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron.cc ← test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets/test_cohesive_buildfacets_hexahedron.cc}
V		test/{test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron.cc ← test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets/test_cohesive_buildfacets_tetrahedron.cc}
V		test/{test_mesh_utils/test_buildfacets ← test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets}/tetrahedron.msh
D		test/test_mesh_utils/test_facet_extraction
D		test/test_mesh_utils/test_facet_extraction/CMakeLists.txt
D		test/test_mesh_utils/test_facet_extraction/cube.geo
D		test/test_mesh_utils/test_facet_extraction/square.geo
D		test/test_mesh_utils/test_facet_extraction/test_facet_extraction_tetrahedron_4.cc
D		test/test_mesh_utils/test_facet_extraction/test_facet_extraction_triangle_3.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/material_selector.dat
A		test/test_model/test_solid_mechanics_model/material_selector.geo
A		test/test_model/test_solid_mechanics_model/material_selector.msh
M		test/test_model/test_solid_mechanics_model/patch_tests/data/material_anisotropic.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/CMakeLists.txt
D		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets
P		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets/CMakeLists.txt Deleted after being copied to multiple locations: test/test_mesh_utils/test_buildfacets/CMakeLists.txt test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/CMakeLists.txt
V		test/{test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets → test_mesh_utils/test_buildfacets}/hexahedron.msh
V		test/{test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets/test_cohesive_buildfacets_hexahedron.cc → test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron.cc}
V		test/{test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets/test_cohesive_buildfacets_tetrahedron.cc → test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron.cc}
V		test/{test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfacets → test_mesh_utils/test_buildfacets}/tetrahedron.msh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/CMakeLists.txt
D		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/fatigue.geo
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/fatigue.msh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/material_fatigue.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_fatigue.cc
A	(dir)	test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/
V		test/test_model/test_solid_mechanics_model/test_cohesive/{test_cohesive_extrinsic_implicit ← test_cohesive_buildfacets}/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/K_matrix_verified
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/material.dat
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/quadrangle.msh
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.cc
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.sh
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_element.dat
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_mesh.msh
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_mesh_prestress.msh
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_mesh_prestress_reinforcement.msh
P		test/test_model/test_solid_mechanics_model/test_embedded_interface/material.dat Copied to test/test_model/test_solid_mechanics_model/test_embedded_interface/prestress.dat
P		test/test_model/test_solid_mechanics_model/test_embedded_interface/prestress.dat Copied from test/test_model/test_solid_mechanics_model/test_embedded_interface/material.dat
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
P		test/test_model/test_solid_mechanics_model/test_embedded_interface/triangle.msh Copied to test/test_geometry/test_geometry_triangle.msh
A		test/test_model/test_solid_mechanics_model/test_material_selector.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/material_damage_non_local.dat
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_damage_non_local.cc
A		test/test_solver/1D_bar.geo
M		test/test_solver/CMakeLists.txt
A		test/test_solver/square.geo
M		test/test_solver/test_petsc_matrix_apply_boundary.cc
A		test/test_solver/test_petsc_matrix_apply_boundary.sh
P		test/test_solver/test_petsc_matrix_diagonal.cc Copied from test/test_solver/test_petsc_matrix_profile.cc
A		test/test_solver/test_petsc_matrix_diagonal.sh
P		test/test_solver/test_petsc_matrix_profile.cc Copied to multiple locations: test/test_solver/test_petsc_matrix_diagonal.cc test/test_solver/test_petsc_matrix_profile_parallel.cc
A		test/test_solver/test_petsc_matrix_profile.verified
P		test/test_solver/test_petsc_matrix_profile_parallel.cc Copied from test/test_solver/test_petsc_matrix_profile.cc
A		test/test_solver/test_petsc_matrix_profile_parallel.sh
A		test/test_solver/test_petsc_matrix_profile_parallel.verified
M		test/test_solver/test_solver_petsc.cc
A		test/test_solver/test_solver_petsc.sh
D		test/test_surface_extraction
D		test/test_surface_extraction/CMakeLists.txt
D		test/test_surface_extraction/cubes.geo
D		test/test_surface_extraction/squares.geo
D		test/test_surface_extraction/test_surface_extraction_tetrahedron_4.cc
D		test/test_surface_extraction/test_surface_extraction_triangle_3.cc
M		third-party/cmake/iohelper.cmake