Merge branch 'features/material_internals_memory' into 'master'
ba9e2713a380
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Authored by richart on Mar 16 2021, 15:24.

Description

Merge branch 'features/material_internals_memory' into 'master'

material internals and memory

See merge request akantu/akantu!16

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Committed

richart

Mar 16 2021, 15:24

Pushed

gitlab-richart

Mar 16 2021, 15:24

Parents

rAKAea2e7652da39: Merge branch 'bugfixes/eigen_strain_failed_init' into 'master'
rAKA5b3351523a74: linting python structural mechanics examples

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Event Timeline

richart committed rAKAba9e2713a380: Merge branch 'features/material_internals_memory' into 'master' (authored by richart).Mar 16 2021, 15:24

Merged Changes

Commit	Author	Details	Committed
5b3351523a74	richart	linting python structural mechanics examples	Mar 15 2021
3eea84761c29	richart	Merge branch 'master' into features/material_internals_memory	Mar 15 2021
bc514ea38833	richart	missing include in py_mesh	Mar 15 2021
e451f9f2d87d	richart	make the compute boundary loads compile and run in structural mechanics	Mar 15 2021
23ce2ae76c3b	richart	Fix the mesh to make the example run properly	Mar 15 2021
797ec47f3478	richart	Bug fixes in examples	Mar 14 2021
a81c6b33ae37	richart	making matplotib optional for the ci	Mar 13 2021
d7eb0b0c18be	richart	Fixing dumper warnings	Mar 13 2021
95d0dced15d1	richart	Adapting due to changes in structural mechanics	Mar 13 2021
9cb01e0c3a12	richart	Merge branch 'master' into features/material_internals_memory	Mar 13 2021
12c0a090caee	richart	Merge branch 'master' into features/material_internals_memory	Mar 13 2021
29cedb86df59	richart	reactivating running examples	Mar 12 2021
af769218ef0b	richart	Missing include	Mar 12 2021
1159730b10be	richart	Bug fix and refactoring	Mar 11 2021
d14823276f56	richart	Reactivating the default values for arrays in models	Mar 10 2021
9a919649ad50	richart	Typo in the ci script	Mar 10 2021
45d7eb9f8b4a	richart	Moving code around	Mar 10 2021
33327d9f46e4	richart	Getting rid of the static memory	Mar 10 2021
a72501b17df2	anciaux	fixed python interface for custom material and internals management	Mar 9 2021
efcdea93f9b5	anciaux	correct a broken example	Mar 9 2021

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				Path
	M			.gitlab-ci.yml
	M			examples/cohesive_element/cohesive_extrinsic/CMakeLists.txt
	A			examples/cohesive_element/cohesive_extrinsic/triangle.msh
	M			examples/cohesive_element/cohesive_intrinsic/CMakeLists.txt
	A			examples/cohesive_element/cohesive_intrinsic/triangle.msh
	M			examples/python/cohesive/plate.py
	M			examples/python/custom-material/bi-material.py
	M			examples/python/eigen_modes/eigen_modes.py
	M			examples/python/structural_mechanics/CMakeLists.txt
	M			examples/python/structural_mechanics/structural_mechanics.py
	M			examples/python/structural_mechanics/structural_mechanics_dynamics.py
	M			examples/python/structural_mechanics/structural_mechanics_softening.py
	M			examples/structural_mechanics/bernoulli_beam_2_example.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem_inline_impl.hh
	M			extra_packages/igfem/src/non_local_manager_igfem.cc
	M			extra_packages/igfem/src/non_local_manager_igfem.hh
	M			extra_packages/igfem/src/shape_igfem.cc
	M			extra_packages/igfem/src/shape_igfem.hh
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.cc
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
	M			packages/core.cmake
	M			python/py_heat_transfer_model.cc
	M			python/py_material.cc
	M			python/py_mesh.cc
	M			python/py_model.cc
	M			python/py_solid_mechanics_model.cc
	M			python/py_solid_mechanics_model_cohesive.cc
	M			python/py_structural_mechanics_model.cc
	M			src/common/aka_array_tmpl.hh
	M			src/common/aka_common.cc
	M			src/common/aka_common.hh
	D			src/common/aka_memory.cc
	D			src/common/aka_memory.hh
	D			src/common/aka_memory_inline_impl.hh
	D			src/common/aka_static_memory.cc
	D			src/common/aka_static_memory.hh
	D			src/common/aka_static_memory_inline_impl.hh
	D			src/common/aka_static_memory_tmpl.hh
	M			src/fe_engine/fe_engine.cc
	M			src/fe_engine/fe_engine.hh
	M			src/fe_engine/fe_engine_template.hh
	M			src/fe_engine/fe_engine_template_tmpl.hh
	M			src/fe_engine/fe_engine_template_tmpl_field.hh
	M			src/fe_engine/integrator.hh
	M			src/fe_engine/integrator_gauss.hh
	M			src/fe_engine/integrator_gauss_inline_impl.hh
	M			src/fe_engine/shape_cohesive.hh
	M			src/fe_engine/shape_cohesive_inline_impl.hh
	M			src/fe_engine/shape_functions.cc
	M			src/fe_engine/shape_functions.hh
	M			src/fe_engine/shape_lagrange.hh
	M			src/fe_engine/shape_lagrange_base.cc
	M			src/fe_engine/shape_lagrange_base.hh
	M			src/fe_engine/shape_lagrange_inline_impl.hh
	M			src/fe_engine/shape_structural.cc
	M			src/fe_engine/shape_structural.hh
	M			src/io/dumper/dumper_material_padders.hh
	M			src/mesh/element_group.cc
	M			src/mesh/element_group.hh
	M			src/mesh/element_type_map.hh
	M			src/mesh/element_type_map_tmpl.hh
	M			src/mesh/group_manager.cc
	M			src/mesh/group_manager.hh
	M			src/mesh/mesh.cc
	M			src/mesh/mesh.hh
	M			src/mesh/mesh_data.cc
	M			src/mesh/mesh_data.hh
	M			src/mesh/mesh_data_tmpl.hh
	M			src/mesh/mesh_inline_impl.hh
	M			src/mesh/mesh_iterators.hh
	M			src/mesh/mesh_periodic.cc
	M			src/mesh/node_group.cc
	M			src/mesh/node_group.hh
	M			src/mesh_utils/mesh_partition.cc
	M			src/mesh_utils/mesh_partition.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
	M			src/mesh_utils/mesh_utils.cc
	M			src/model/common/dof_manager/dof_manager.cc
	M			src/model/common/dof_manager/dof_manager.hh
	M			src/model/common/dof_manager/dof_manager_default.cc
	M			src/model/common/dof_manager/dof_manager_default.hh
	M			src/model/common/dof_manager/dof_manager_petsc.cc
	M			src/model/common/dof_manager/dof_manager_petsc.hh
	M			src/model/common/model_solver.cc
	M			src/model/common/model_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver.cc
	M			src/model/common/non_linear_solver/non_linear_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver_linear.cc
	M			src/model/common/non_linear_solver/non_linear_solver_linear.hh
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.cc
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.hh
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.cc
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.hh
	M			src/model/common/non_local_toolbox/neighborhood_base.cc
	M			src/model/common/non_local_toolbox/neighborhood_base.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
	M			src/model/common/non_local_toolbox/non_local_manager.cc
	M			src/model/common/non_local_toolbox/non_local_manager.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
	M			src/model/common/time_step_solvers/time_step_solver.cc
	M			src/model/common/time_step_solvers/time_step_solver.hh
	M			src/model/common/time_step_solvers/time_step_solver_default.cc
	M			src/model/common/time_step_solvers/time_step_solver_default.hh
	M			src/model/heat_transfer/heat_transfer_model.cc
	M			src/model/heat_transfer/heat_transfer_model.hh
	M			src/model/model.cc
	M			src/model/model.hh
	M			src/model/model_inline_impl.hh
	M			src/model/solid_mechanics/material.cc
	M			src/model/solid_mechanics/material.hh
	M			src/model/solid_mechanics/materials/internal_field_tmpl.hh
	M			src/model/solid_mechanics/solid_mechanics_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_io.cc
	M			src/model/solid_mechanics/solid_mechanics_model_material.cc
	M			src/model/structural_mechanics/structural_mechanics_model.cc
	M			src/model/structural_mechanics/structural_mechanics_model.hh
	M			src/model/structural_mechanics/structural_mechanics_model_inline_impl.hh
	M			src/solver/solver_petsc.cc
	M			src/solver/solver_petsc.hh
	M			src/solver/sparse_solver.cc
	M			src/solver/sparse_solver.hh
	M			src/solver/sparse_solver_mumps.cc
	M			src/solver/sparse_solver_mumps.hh
	M			src/synchronizer/dof_synchronizer.cc
	M			src/synchronizer/dof_synchronizer.hh
	M			src/synchronizer/element_synchronizer.cc
	M			src/synchronizer/element_synchronizer.hh
	M			src/synchronizer/facet_synchronizer.cc
	M			src/synchronizer/facet_synchronizer.hh
	M			src/synchronizer/grid_synchronizer.cc
	M			src/synchronizer/grid_synchronizer.hh
	M			src/synchronizer/grid_synchronizer_tmpl.hh
	M			src/synchronizer/node_synchronizer.cc
	M			src/synchronizer/node_synchronizer.hh
	M			src/synchronizer/periodic_node_synchronizer.cc
	M			src/synchronizer/periodic_node_synchronizer.hh
	M			src/synchronizer/synchronizer.cc
	M			src/synchronizer/synchronizer.hh
	M			src/synchronizer/synchronizer_impl.hh
	M			src/synchronizer/synchronizer_impl_tmpl.hh
	M			test/CMakeLists.txt
	M			test/test_model/test_common/test_dof_manager.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/my_model.hh
	M			test/test_model/test_solid_mechanics_model/cube_two_materials.geo
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
	D			test/test_static_memory
	D			test/test_static_memory/CMakeLists.txt
	D			test/test_static_memory/test_static_memory.cc
	M			test/test_synchronizer/test_facet_synchronizer.cc
	M			test/test_synchronizer/test_synchronizer_communication.cc