Merge branch 'features/material_internals_memory' into 'master'
e1a94b307393
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Authored by richart on Mar 16 2021, 15:24.

Description

Merge branch 'features/material_internals_memory' into 'master'

material internals and memory

See merge request akantu/akantu!16

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Committed

richart

Mar 16 2021, 15:24

Pushed

gitlab-richart

Jul 29 2021, 09:01

Parents

rAKAc287bfa68439: linting python structural mechanics examples
rAKA96d721e75caf: Merge branch 'bugfixes/eigen_strain_failed_init' into 'master'

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richart committed rAKAe1a94b307393: Merge branch 'features/material_internals_memory' into 'master' (authored by richart).Mar 16 2021, 15:24

Merged Changes

Commit	Author	Details	Committed
c287bfa68439	richart	linting python structural mechanics examples	Mar 15 2021
566986b729dd	richart	Merge branch 'master' into features/material_internals_memory	Mar 15 2021
2d55c02870b7	richart	missing include in py_mesh	Mar 15 2021
48cd41bb1b6d	richart	make the compute boundary loads compile and run in structural mechanics	Mar 15 2021
a58c0aa0bed8	richart	Fix the mesh to make the example run properly	Mar 15 2021
31f6fd181ec8	richart	Bug fixes in examples	Mar 14 2021
bce187dcb622	richart	making matplotib optional for the ci	Mar 13 2021
9d302f1bae82	richart	Fixing dumper warnings	Mar 13 2021
64cf152a54e1	richart	Adapting due to changes in structural mechanics	Mar 13 2021
bc650421eb69	richart	Merge branch 'master' into features/material_internals_memory	Mar 13 2021
526b254b52f6	richart	Merge branch 'master' into features/material_internals_memory	Mar 13 2021
f7a03f684004	richart	reactivating running examples	Mar 12 2021
dc620ac87a26	richart	Missing include	Mar 12 2021
42afd1028858	richart	Bug fix and refactoring	Mar 11 2021
91a164c86eca	richart	Reactivating the default values for arrays in models	Mar 10 2021
dfbd54b83e4a	richart	Typo in the ci script	Mar 10 2021
c66842af1879	richart	Moving code around	Mar 10 2021
a724d3f2390c	richart	Getting rid of the static memory	Mar 10 2021
ec9bba98060e	anciaux	fixed python interface for custom material and internals management	Mar 9 2021
c0d7155922e1	anciaux	correct a broken example	Mar 9 2021

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				Path
	M			.gitlab-ci.yml
	M			examples/cohesive_element/cohesive_extrinsic/CMakeLists.txt
	A			examples/cohesive_element/cohesive_extrinsic/triangle.msh
	M			examples/cohesive_element/cohesive_intrinsic/CMakeLists.txt
	A			examples/cohesive_element/cohesive_intrinsic/triangle.msh
	M			examples/python/cohesive/plate.py
	M			examples/python/custom-material/bi-material.py
	M			examples/python/eigen_modes/eigen_modes.py
	M			examples/python/structural_mechanics/CMakeLists.txt
	M			examples/python/structural_mechanics/structural_mechanics.py
	M			examples/python/structural_mechanics/structural_mechanics_dynamics.py
	M			examples/python/structural_mechanics/structural_mechanics_softening.py
	M			examples/structural_mechanics/bernoulli_beam_2_example.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem_inline_impl.hh
	M			extra_packages/igfem/src/non_local_manager_igfem.cc
	M			extra_packages/igfem/src/non_local_manager_igfem.hh
	M			extra_packages/igfem/src/shape_igfem.cc
	M			extra_packages/igfem/src/shape_igfem.hh
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.cc
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
	M			packages/core.cmake
	M			python/py_heat_transfer_model.cc
	M			python/py_material.cc
	M			python/py_mesh.cc
	M			python/py_model.cc
	M			python/py_solid_mechanics_model.cc
	M			python/py_solid_mechanics_model_cohesive.cc
	M			python/py_structural_mechanics_model.cc
	M			src/common/aka_array_tmpl.hh
	M			src/common/aka_common.cc
	M			src/common/aka_common.hh
	D			src/common/aka_memory.cc
	D			src/common/aka_memory.hh
	D			src/common/aka_memory_inline_impl.hh
	D			src/common/aka_static_memory.cc
	D			src/common/aka_static_memory.hh
	D			src/common/aka_static_memory_inline_impl.hh
	D			src/common/aka_static_memory_tmpl.hh
	M			src/fe_engine/fe_engine.cc
	M			src/fe_engine/fe_engine.hh
	M			src/fe_engine/fe_engine_template.hh
	M			src/fe_engine/fe_engine_template_tmpl.hh
	M			src/fe_engine/fe_engine_template_tmpl_field.hh
	M			src/fe_engine/integrator.hh
	M			src/fe_engine/integrator_gauss.hh
	M			src/fe_engine/integrator_gauss_inline_impl.hh
	M			src/fe_engine/shape_cohesive.hh
	M			src/fe_engine/shape_cohesive_inline_impl.hh
	M			src/fe_engine/shape_functions.cc
	M			src/fe_engine/shape_functions.hh
	M			src/fe_engine/shape_lagrange.hh
	M			src/fe_engine/shape_lagrange_base.cc
	M			src/fe_engine/shape_lagrange_base.hh
	M			src/fe_engine/shape_lagrange_inline_impl.hh
	M			src/fe_engine/shape_structural.cc
	M			src/fe_engine/shape_structural.hh
	M			src/io/dumper/dumper_material_padders.hh
	M			src/mesh/element_group.cc
	M			src/mesh/element_group.hh
	M			src/mesh/element_type_map.hh
	M			src/mesh/element_type_map_tmpl.hh
	M			src/mesh/group_manager.cc
	M			src/mesh/group_manager.hh
	M			src/mesh/mesh.cc
	M			src/mesh/mesh.hh
	M			src/mesh/mesh_data.cc
	M			src/mesh/mesh_data.hh
	M			src/mesh/mesh_data_tmpl.hh
	M			src/mesh/mesh_inline_impl.hh
	M			src/mesh/mesh_iterators.hh
	M			src/mesh/mesh_periodic.cc
	M			src/mesh/node_group.cc
	M			src/mesh/node_group.hh
	M			src/mesh_utils/mesh_partition.cc
	M			src/mesh_utils/mesh_partition.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
	M			src/mesh_utils/mesh_utils.cc
	M			src/model/common/dof_manager/dof_manager.cc
	M			src/model/common/dof_manager/dof_manager.hh
	M			src/model/common/dof_manager/dof_manager_default.cc
	M			src/model/common/dof_manager/dof_manager_default.hh
	M			src/model/common/dof_manager/dof_manager_petsc.cc
	M			src/model/common/dof_manager/dof_manager_petsc.hh
	M			src/model/common/model_solver.cc
	M			src/model/common/model_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver.cc
	M			src/model/common/non_linear_solver/non_linear_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver_linear.cc
	M			src/model/common/non_linear_solver/non_linear_solver_linear.hh
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.cc
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.hh
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.cc
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.hh
	M			src/model/common/non_local_toolbox/neighborhood_base.cc
	M			src/model/common/non_local_toolbox/neighborhood_base.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
	M			src/model/common/non_local_toolbox/non_local_manager.cc
	M			src/model/common/non_local_toolbox/non_local_manager.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
	M			src/model/common/time_step_solvers/time_step_solver.cc
	M			src/model/common/time_step_solvers/time_step_solver.hh
	M			src/model/common/time_step_solvers/time_step_solver_default.cc
	M			src/model/common/time_step_solvers/time_step_solver_default.hh
	M			src/model/heat_transfer/heat_transfer_model.cc
	M			src/model/heat_transfer/heat_transfer_model.hh
	M			src/model/model.cc
	M			src/model/model.hh
	M			src/model/model_inline_impl.hh
	M			src/model/solid_mechanics/material.cc
	M			src/model/solid_mechanics/material.hh
	M			src/model/solid_mechanics/materials/internal_field_tmpl.hh
	M			src/model/solid_mechanics/solid_mechanics_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_io.cc
	M			src/model/solid_mechanics/solid_mechanics_model_material.cc
	M			src/model/structural_mechanics/structural_mechanics_model.cc
	M			src/model/structural_mechanics/structural_mechanics_model.hh
	M			src/model/structural_mechanics/structural_mechanics_model_inline_impl.hh
	M			src/solver/solver_petsc.cc
	M			src/solver/solver_petsc.hh
	M			src/solver/sparse_solver.cc
	M			src/solver/sparse_solver.hh
	M			src/solver/sparse_solver_mumps.cc
	M			src/solver/sparse_solver_mumps.hh
	M			src/synchronizer/dof_synchronizer.cc
	M			src/synchronizer/dof_synchronizer.hh
	M			src/synchronizer/element_synchronizer.cc
	M			src/synchronizer/element_synchronizer.hh
	M			src/synchronizer/facet_synchronizer.cc
	M			src/synchronizer/facet_synchronizer.hh
	M			src/synchronizer/grid_synchronizer.cc
	M			src/synchronizer/grid_synchronizer.hh
	M			src/synchronizer/grid_synchronizer_tmpl.hh
	M			src/synchronizer/node_synchronizer.cc
	M			src/synchronizer/node_synchronizer.hh
	M			src/synchronizer/periodic_node_synchronizer.cc
	M			src/synchronizer/periodic_node_synchronizer.hh
	M			src/synchronizer/synchronizer.cc
	M			src/synchronizer/synchronizer.hh
	M			src/synchronizer/synchronizer_impl.hh
	M			src/synchronizer/synchronizer_impl_tmpl.hh
	M			test/CMakeLists.txt
	M			test/test_model/test_common/test_dof_manager.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/my_model.hh
	M			test/test_model/test_solid_mechanics_model/cube_two_materials.geo
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
	D			test/test_static_memory
	D			test/test_static_memory/CMakeLists.txt
	D			test/test_static_memory/test_static_memory.cc
	M			test/test_synchronizer/test_facet_synchronizer.cc
	M			test/test_synchronizer/test_synchronizer_communication.cc