Merge branch 'features/eigen' into 'master'
e29c5d5d51cb
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Authored by anciaux on Mar 10 2023, 15:34.

Description

Merge branch 'features/eigen' into 'master'

Switch internal matrice vector to eigen

See merge request akantu/akantu!6

Details

Committed

anciaux

Mar 10 2023, 15:34

Pushed

gitlab-richart

Mar 10 2023, 15:35

Parents

rAKA61931e8adefa: Unizialized memory in phase field material
rAKA7f6701630ec6: Merge branch 'features/47-disable-of-certain-elements' into 'master'

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Event Timeline

anciaux committed rAKAe29c5d5d51cb: Merge branch 'features/eigen' into 'master' (authored by anciaux).Mar 10 2023, 15:34

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
61931e8adefa	Nicolas Richart	Unizialized memory in phase field material	Mar 3 2023
5a6abff5d24e	Nicolas Richart	Merge remote-tracking branch 'origin/master' into features/eigen	Mar 1 2023
f700d699eaa8	Nicolas Richart	Cleaning the cmake to remove blas/lapack etc	Mar 1 2023
13e8c2729164	Nicolas Richart	Merge remote-tracking branch 'origin/master' into features/eigen	Mar 1 2023
c26682e55e69	Nicolas Richart	Removing some code that should be useless	Feb 28 2023
9d5f3b97c14b	Nicolas Richart	Deactivating code quality checks with pylint	Feb 28 2023
014d966eb948	richart	version 0.90.0 of codeclimate is not yet available	Jan 31 2023
9d1b388c8329	richart	Trying to improve the code quality	Jan 31 2023
da15259a6b4f	richart	Changes for code quality pylint	Jan 31 2023
7dd1d459f5eb	richart	Adding artifact to help correct the code quality entries	Jan 29 2023
ec0687d64e2f	richart	More code quality cleaning	Jan 29 2023
57d763e4a77c	richart	Merge branch 'features/eigen' of gitlab.com:akantu/akantu into features/eigen	Jan 28 2023
2808662af970	richart	Working on the code quality	Jan 28 2023
c97b2b1969ca	Nicolas Richart	Merge branch 'features/eigen' of gitlab.com:akantu/akantu into features/eigen	Jan 25 2023
d4c8921eabba	Nicolas Richart	Adding debug tools in the docker image	Jan 25 2023
2ccf190bdba8	richart	Merge remote-tracking branch 'origin/master' into features/eigen	Jan 25 2023
658975961dd7	Nicolas Richart	Changing ubuntu lts to 20.04	Dec 23 2022
14d0cc09de03	Nicolas Richart	Roll back of eig to eigh	Dec 23 2022
801237941204	Nicolas Richart	Merge branch 'master' into features/eigen	Dec 23 2022
5bb67d7f3c81	richart	Sanitizing the code	Nov 22 2022
e5d61d9ec040	richart	File moved	Nov 1 2022
87a312751636	richart	Compilation problems with clang	Nov 1 2022
c78d64156d85	richart	Removed to many artifacts	Nov 1 2022
d1c71d08427a	richart	Cannot find the tags... in CI	Nov 1 2022
0891c25cd53c	richart	More debugging on semver.py	Nov 1 2022
f14086f0c01e	richart	debug semver.py	Nov 1 2022
d91992449712	richart	Correcting artifacts and caches	Nov 1 2022
37e79e10c961	richart	Making it compile with clang	Nov 1 2022
c3769466a8e9	richart	Simplified named tuples	Oct 31 2022
b0b829f4079d	richart	Wrong indentation	Oct 14 2022
8b19bd7e817e	richart	missing caches entries	Oct 14 2022
f0b32b8f98b8	richart	More typos in eigne::matrix usage	Oct 14 2022
e87857035277	richart	remaining build/ in artifacts	Oct 14 2022
08fb99482f17	richart	Bug fix in Eigen types usage	Oct 14 2022
ccc96932bdfa	richart	cache in python package build	Oct 14 2022
90e1923368fa	richart	Reactivating caches on s3	Oct 14 2022
318549408f36	richart	Changed tolerance in phasefield example	Oct 14 2022
f831878cba80	richart	Going back to artifacts appart for valgrind	Oct 13 2022
0ce191e814c7	richart	Bug fixes	Oct 12 2022
c623efe070c6	richart	bug fix in parser and material viscoelastic maxwell	Oct 12 2022
9232cdb733cc	richart	debuging caches usage	Oct 11 2022
bd72d244ea14	richart	Wrong cache definition in tests	Oct 11 2022
df35f1e9b1e5	richart	third-party cache not properly defined	Oct 11 2022
b72ed3744110	richart	type in ci (pull-push)	Oct 11 2022
56b75cf5ec76	richart	typo in the caches	Oct 11 2022
bdd890a91301	richart	more changes in caches	Oct 11 2022
a58250af24f8	richart	Modifying caches	Oct 11 2022
dc091c8cf015	richart	Trying to debug build caches	Oct 11 2022
15e58107f54f	richart	trying caches instead of artifacts	Oct 10 2022
f9335e9766b8	richart	Changing docker version	Oct 10 2022

Changes (910)
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Very Large Commit

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	A			"requirements.txt\n"
	M			.clang-tidy
	M			.codeclimate.yml
	M			.flake8
	M			.gitignore
	M			.gitlab-ci.d/code-quality.yaml
	M			.gitlab-ci.d/images.yaml
	M			.gitlab-ci.d/templates.yaml
	M			.gitlab-ci.yml
	M			CHANGELOG.md
	M			CMakeLists.txt
	M			cmake/AkantuExtraCompilationProfiles.cmake
	M			cmake/AkantuMacros.cmake
	M			cmake/AkantuNeedPybind11.cmake
	M			cmake/AkantuPackagesSystem.cmake
	M			cmake/AkantuTestsMacros.cmake
	M			cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
	M			cmake/Modules/CMakeVersionGenerator.cmake
	M			cmake/Modules/FindMumps.cmake
	D			cmake/Modules/FindPythonLibsNew.cmake
	M			cmake/akantu_environement.sh.in
	M			cmake/akantu_test_driver.sh
	A			cmake/asan_akantu.supp
	A			cmake/check_builtin_expect.cc
	A			cmake/check_constexpr_map.cc
	A			cmake/check_gnu_unlikely.cc
	M			cmake/libakantu/v3/printers.py
	A			cmake/lsan_akantu.supp
	M			cmake/sanitize-blacklist.txt
	M			cmake/semver.py
	M			doc/coding_convention/snippet/for
	M			doc/dev-doc/changelog.rst
	M			doc/dev-doc/conf.py
	M			doc/dev-doc/manual/getting_started.rst
	M			doc/dev-doc/manual/heattransfermodel.rst
	M			doc/dev-doc/manual/new-constitutive-laws.rst
	M			doc/dev-doc/manual/solidmechanicsmodel.rst
	M			doc/dev-doc/manual/structuralmechanicsmodel.rst
	M			doc/manual/manual-changelog.tex
	M			doc/manual/manual-feengine.tex
	M			doc/manual/manual-gettingstarted.tex
	M			doc/manual/manual-heattransfermodel.tex
	M			doc/manual/manual-io.tex
	M			doc/manual/manual-solidmechanicsmodel.tex
	M			doc/manual/manual-structuralmechanicsmodel.tex
	M			examples/boundary_conditions/python_user_defined_bc/python_user_defined_bc.cc
	M			examples/boundary_conditions/user_defined_bc/user_defined_bc.cc
	M			examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
	M			examples/cohesive_element/cohesive_extrinsic_ig_tg/cohesive_extrinsic_ig_tg.cc
	M			examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
	M			examples/contact_mechanics/cohesive_contact_explicit_dynamic.cc
	M			examples/contact_mechanics/contact_explicit_dynamic.cc
	M			examples/contact_mechanics/contact_explicit_static.cc
	M			examples/embedded/embedded.cc
	M			examples/explicit/explicit_dynamic.cc
	M			examples/heat_transfer/heat_transfer_dynamics_2d.cc
	M			examples/heat_transfer/heat_transfer_dynamics_3d.cc
	M			examples/heat_transfer/heat_transfer_static_2d.cc
	M			examples/implicit/implicit_dynamic.cc
	M			examples/io/dumper/dumpable_interface.cc
	M			examples/io/dumper/dumper_low_level.cc
	M			examples/io/dumper/locomotive_tools.cc
	M			examples/io/dumper/locomotive_tools.hh
	M			examples/new_material/local_material_damage.cc
	M			examples/new_material/local_material_damage.hh
	M			examples/new_material/local_material_damage_inline_impl.hh
	M			examples/new_material/new_local_material.cc
	M			examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
	M			examples/parallel/parallel_2d.cc
	M			examples/phase_field/phase_field_notch.cc
	M			examples/python/cohesive/custom_material.py
	M			examples/python/cohesive/plate.py
	M			examples/python/contact-mechanics/compression.py
	M			examples/python/phase-field/phasefield-static.py
	M			examples/python/structural_mechanics/structural_mechanics.py
	M			examples/python/structural_mechanics/structural_mechanics_dynamics.py
	M			examples/static/static.cc
	M			examples/structural_mechanics/bernoulli_beam_2_example.cc
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	M			extra_packages/extra-materials/src/material_damage/material_vreepeerlings_tmpl.hh
	M			extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
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	M			extra_packages/extra-materials/src/material_plastic/material_viscoplastic_inline_impl.hh
	M			extra_packages/extra-materials/src/material_viscoelastic/material_stiffness_proportional.cc
	M			extra_packages/extra-materials/src/material_viscoelastic/material_stiffness_proportional.hh
	M			extra_packages/extra-materials/test/test_material_FE2/test_eigenstrain_homogenization.cc
	M			extra_packages/extra-materials/test/test_material_FE2/test_elastic_homogenization.cc
	M			extra_packages/extra-materials/test/test_material_FE2/test_material_FE2.cc
	M			extra_packages/extra-materials/test/test_material_FE2/test_node_selection.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_iterative_stiffness_reduction.cc
	M			extra_packages/igfem/package.cmake
	M			extra_packages/igfem/src/dumper_igfem_connectivity.hh
	M			extra_packages/igfem/src/dumper_igfem_element_partition.hh
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	M			extra_packages/igfem/src/dumper_igfem_generic_elemental_field.hh
	M			extra_packages/igfem/src/dumper_igfem_material_internal_field.hh
	M			extra_packages/igfem/src/dumper_igfem_quadrature_points_field.hh
	M			extra_packages/igfem/src/element_class_igfem.hh
	M			extra_packages/igfem/src/fe_engine_template_tmpl_igfem.hh
	M			extra_packages/igfem/src/geometrical_element_igfem.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem.hh
	M			extra_packages/igfem/src/integrator_gauss_igfem_inline_impl.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic_inline_impl.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_iterative_stiffness_reduction.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_iterative_stiffness_reduction.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage.hh
	M			extra_packages/igfem/src/material_igfem/material_igfem_saw_tooth_damage_inline_impl.hh
	M			extra_packages/igfem/src/mesh_igfem_spherical_growing_gel.hh
	M			extra_packages/igfem/src/mesh_igfem_spherical_growing_gel_tmpl.hh
	M			extra_packages/igfem/src/non_local_manager_igfem.cc
	M			extra_packages/igfem/src/shape_igfem.cc
	M			extra_packages/igfem/src/shape_igfem.hh
	M			extra_packages/igfem/src/shape_igfem_inline_impl.hh
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.cc
	M			extra_packages/igfem/src/solid_mechanics_model_igfem.hh
	M			extra_packages/igfem/src/solid_mechanics_model_igfem_inline_impl.hh
	M			extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
	M			extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
	M			extra_packages/igfem/test/patch_tests/test_interface_position.cc
	M			extra_packages/igfem/test/test_fe_engine/igfem_mesh_generation.cc
	M			extra_packages/igfem/test/test_fe_engine/test_fe_engine_precomputation.cc
	M			extra_packages/igfem/test/test_fe_engine/test_gradient.cc
	M			extra_packages/igfem/test/test_fe_engine/test_integrate.cc
	M			extra_packages/igfem/test/test_fe_engine/test_interpolate.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_eigenstrain.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_igfem_element_orientation.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_tangent_transfer.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_transfer_internals.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_volume_computation.cc
	M			extra_packages/traction-at-split-node-contact/src/common/manual_restart.cc
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array.hh
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array_inline_impl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
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	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact_inline_impl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
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	D			packages/blas.cmake
	M			packages/cohesive_element.cmake
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	M			packages/damage_non_local.cmake
	A			packages/debug_tools.cmake
	A			packages/eigen.cmake
	M			packages/heat_transfer.cmake
	V			{packages/lapack.cmake → test/test_mesh_utils/test_buildfacets/CMakeLists.txt}
	M			packages/mpi.cmake
	D			packages/pybind11.cmake
	D			packages/python.cmake
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	M			python/CMakeLists.txt
	M			python/akantu/__init__.py
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	M			python/py_boundary_conditions.cc
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	M			python/py_material.cc
	M			python/py_material_selector.cc
	M			python/py_mesh.cc
	M			python/py_phase_field_model.cc
	M			python/py_solid_mechanics_model_cohesive.cc
	M			python/py_solver.cc
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	M			setup.py
	M			src/CMakeLists.txt
	M			src/common/aka_array.cc
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	A			src/common/aka_types_eigen_matrix_base_plugin.hh
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	M			src/common/aka_voigthelper.cc
	M			src/common/aka_voigthelper.hh
	M			src/common/aka_voigthelper_tmpl.hh
	M			src/common/aka_warning.hh
	M			src/common/aka_warning_restore.hh
	M			src/fe_engine/cohesive_element.hh
	M			src/fe_engine/element.hh
	M			src/fe_engine/element_class.hh
	M			src/fe_engine/element_class_helper.hh
	M			src/fe_engine/element_class_structural.hh
	M			src/fe_engine/element_class_tmpl.hh
	M			src/fe_engine/element_classes/element_class_bernoulli_beam_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_hermite_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_hexahedron_8_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_point_1_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_quadrangle_4_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_quadrangle_8_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_segment_2_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_segment_3_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_tetrahedron_10_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_tetrahedron_4_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_triangle_3_inline_impl.hh
	M			src/fe_engine/element_classes/element_class_triangle_6_inline_impl.hh
	P			src/fe_engine/element_type_conversion.hh Copied to src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_non_local.hh
	M			src/fe_engine/fe_engine.cc
	M			src/fe_engine/fe_engine.hh
	M			src/fe_engine/fe_engine_inline_impl.hh
	M			src/fe_engine/fe_engine_template.hh
	M			src/fe_engine/fe_engine_template_cohesive.cc
	M			src/fe_engine/fe_engine_template_tmpl.hh
	M			src/fe_engine/fe_engine_template_tmpl_field.hh
	M			src/fe_engine/fe_engine_template_tmpl_struct.hh
	M			src/fe_engine/gauss_integration_tmpl.hh
	M			src/fe_engine/geometrical_element_property.cc
	M			src/fe_engine/geometrical_element_property.hh
	M			src/fe_engine/integration_point.hh
	M			src/fe_engine/integrator.hh
	M			src/fe_engine/integrator_gauss.hh
	M			src/fe_engine/integrator_gauss_inline_impl.hh
	M			src/fe_engine/interpolation_element_tmpl.hh
	M			src/fe_engine/shape_cohesive.hh
	M			src/fe_engine/shape_cohesive_inline_impl.hh
	M			src/fe_engine/shape_functions.cc
	M			src/fe_engine/shape_functions.hh
	M			src/fe_engine/shape_functions_inline_impl.hh
	M			src/fe_engine/shape_lagrange.hh
	M			src/fe_engine/shape_lagrange_base.cc
	M			src/fe_engine/shape_lagrange_base.hh
	M			src/fe_engine/shape_lagrange_base_inline_impl.hh
	M			src/fe_engine/shape_lagrange_inline_impl.hh
	M			src/fe_engine/shape_structural.cc
	M			src/fe_engine/shape_structural.hh
	M			src/fe_engine/shape_structural_inline_impl.hh
	M			src/geometry/geom_helper_functions.hh
	M			src/geometry/mesh_abstract_intersector.hh
	M			src/geometry/mesh_abstract_intersector_tmpl.hh
	M			src/geometry/mesh_geom_factory.hh
	M			src/geometry/mesh_geom_factory_tmpl.hh
	M			src/geometry/mesh_geom_intersector.hh
	M			src/geometry/mesh_geom_intersector_tmpl.hh
	M			src/geometry/mesh_segment_intersector.hh
	M			src/geometry/mesh_segment_intersector_tmpl.hh
	M			src/geometry/mesh_sphere_intersector.hh
	M			src/geometry/mesh_sphere_intersector_tmpl.hh
	M			src/geometry/tree_type_helper.hh
	M			src/io/dumper/dumpable.cc
	M			src/io/dumper/dumpable_dummy.hh
	M			src/io/dumper/dumpable_inline_impl.hh
	M			src/io/dumper/dumpable_iohelper.hh
	M			src/io/dumper/dumper_compute.hh
	M			src/io/dumper/dumper_element_iterator.hh
	M			src/io/dumper/dumper_element_partition.hh
	M			src/io/dumper/dumper_elemental_field.hh
	M			src/io/dumper/dumper_field.hh
	M			src/io/dumper/dumper_filtered_connectivity.hh
	M			src/io/dumper/dumper_generic_elemental_field.hh
	M			src/io/dumper/dumper_generic_elemental_field_tmpl.hh
	M			src/io/dumper/dumper_homogenizing_field.hh
	M			src/io/dumper/dumper_internal_material_field.hh
	M			src/io/dumper/dumper_iohelper.cc
	M			src/io/dumper/dumper_iohelper.hh
	M			src/io/dumper/dumper_material_padders.hh
	M			src/io/dumper/dumper_nodal_field.hh
	M			src/io/dumper/dumper_padding_helper.hh
	M			src/io/dumper/dumper_text.cc
	M			src/io/dumper/dumper_text.hh
	M			src/io/dumper/dumper_type_traits.hh
	M			src/io/dumper/dumper_variable.hh
	M			src/io/mesh_io.cc
	M			src/io/mesh_io/mesh_io_diana.cc
	M			src/io/mesh_io/mesh_io_diana.hh
	M			src/io/mesh_io/mesh_io_msh.cc
	M			src/io/mesh_io/mesh_io_msh.hh
	M			src/io/mesh_io/mesh_io_msh_struct.cc
	M			src/io/parser/algebraic_parser.hh
	M			src/io/parser/parameter_registry.cc
	M			src/io/parser/parameter_registry.hh
	M			src/io/parser/parameter_registry_tmpl.hh
	M			src/io/parser/parsable.cc
	M			src/io/parser/parsable.hh
	M			src/io/parser/parser.hh
	M			src/io/parser/parser_grammar_tmpl.hh
	M			src/io/parser/parser_tmpl.hh
	M			src/mesh/element_group.cc
	M			src/mesh/element_group.hh
	M			src/mesh/element_group_inline_impl.hh
	M			src/mesh/element_type_map.cc
	M			src/mesh/element_type_map.hh
	M			src/mesh/element_type_map_filter.hh
	M			src/mesh/element_type_map_tmpl.hh
	M			src/mesh/group_manager.cc
	M			src/mesh/group_manager.hh
	M			src/mesh/group_manager_inline_impl.hh
	M			src/mesh/mesh.cc
	M			src/mesh/mesh.hh
	M			src/mesh/mesh_accessor.hh
	M			src/mesh/mesh_data.hh
	M			src/mesh/mesh_data_tmpl.hh
	M			src/mesh/mesh_events.hh
	M			src/mesh/mesh_inline_impl.hh
	M			src/mesh/mesh_iterators.hh
	M			src/mesh/mesh_periodic.cc
	M			src/mesh/node_group.cc
	M			src/mesh/node_group.hh
	M			src/mesh/node_group_inline_impl.hh
	A			src/mesh_utils/boost_graph_converter.cc
	A			src/mesh_utils/boost_graph_converter.hh
	M			src/mesh_utils/cohesive_element_inserter.cc
	M			src/mesh_utils/cohesive_element_inserter.hh
	M			src/mesh_utils/cohesive_element_inserter_helper.cc
	M			src/mesh_utils/cohesive_element_inserter_helper.hh
	M			src/mesh_utils/cohesive_element_inserter_inline_impl.hh
	M			src/mesh_utils/global_ids_updater.cc
	M			src/mesh_utils/global_ids_updater.hh
	M			src/mesh_utils/global_ids_updater_inline_impl.hh
	M			src/mesh_utils/mesh_partition.cc
	M			src/mesh_utils/mesh_partition.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
	M			src/mesh_utils/mesh_utils.cc
	M			src/mesh_utils/mesh_utils.hh
	M			src/mesh_utils/mesh_utils_distribution.cc
	M			src/mesh_utils/mesh_utils_pbc.cc
	M			src/model/common/boundary_condition/boundary_condition.hh
	M			src/model/common/boundary_condition/boundary_condition_functor.hh
	M			src/model/common/boundary_condition/boundary_condition_functor_inline_impl.hh
	M			src/model/common/boundary_condition/boundary_condition_tmpl.hh
	M			src/model/common/dof_manager/dof_manager.cc
	M			src/model/common/dof_manager/dof_manager.hh
	M			src/model/common/dof_manager/dof_manager_default.cc
	M			src/model/common/dof_manager/dof_manager_default.hh
	M			src/model/common/dof_manager/dof_manager_inline_impl.hh
	M			src/model/common/dof_manager/dof_manager_petsc.cc
	M			src/model/common/dof_manager/dof_manager_petsc.hh
	M			src/model/common/integration_scheme/generalized_trapezoidal.cc
	M			src/model/common/integration_scheme/generalized_trapezoidal.hh
	M			src/model/common/integration_scheme/integration_scheme.hh
	M			src/model/common/integration_scheme/newmark-beta.cc
	M			src/model/common/integration_scheme/newmark-beta.hh
	M			src/model/common/integration_scheme/pseudo_time.cc
	P			src/model/common/integration_scheme/pseudo_time.hh Copied to
	M			src/model/common/non_linear_solver/non_linear_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.cc
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.cc
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.hh
	A			src/model/common/non_local_toolbox/base_weight_function.cc
	M			src/model/common/non_local_toolbox/base_weight_function.hh
	M			src/model/common/non_local_toolbox/base_weight_function_inline_impl.hh
	M			src/model/common/non_local_toolbox/neighborhood_base.cc
	M			src/model/common/non_local_toolbox/neighborhood_base.hh
	M			src/model/common/non_local_toolbox/neighborhood_base_inline_impl.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.hh
	M			src/model/common/non_local_toolbox/non_local_manager.cc
	M			src/model/common/non_local_toolbox/non_local_manager.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.hh
	M			src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
	M			src/model/common/time_step_solvers/time_step_solver.hh
	M			src/model/common/time_step_solvers/time_step_solver_default.cc
	M			src/model/common/time_step_solvers/time_step_solver_default.hh
	M			src/model/contact_mechanics/contact_detector.cc
	M			src/model/contact_mechanics/contact_detector.hh
	M			src/model/contact_mechanics/contact_detector_inline_impl.cc
	M			src/model/contact_mechanics/contact_element.hh
	M			src/model/contact_mechanics/contact_mechanics_model.cc
	M			src/model/contact_mechanics/contact_mechanics_model.hh
	P			src/model/contact_mechanics/geometry_utils.cc Copied from test/test_model/test_contact_mechanics_model/test_resolution/test_explicit_resolution.cc
	M			src/model/contact_mechanics/geometry_utils.hh
	M			src/model/contact_mechanics/geometry_utils_inline_impl.cc
	M			src/model/contact_mechanics/resolution.cc
	M			src/model/contact_mechanics/resolution.hh
	M			src/model/contact_mechanics/resolution_utils.cc
	M			src/model/contact_mechanics/resolution_utils.hh
	M			src/model/contact_mechanics/resolutions/resolution_penalty.cc
	V			src/model/contact_mechanics/resolutions/{resolution_penalty.hh ← resolution_penalty_quadratic.hh}
	M			src/model/contact_mechanics/resolutions/resolution_penalty_quadratic.cc
	V			src/model/contact_mechanics/resolutions/{resolution_penalty_quadratic.hh → resolution_penalty.hh}
	M			src/model/contact_mechanics/surface_selector.cc
	M			src/model/contact_mechanics/surface_selector.hh
	M			src/model/heat_transfer/heat_transfer_model.cc
	M			src/model/heat_transfer/heat_transfer_model.hh
	P			src/model/heat_transfer/heat_transfer_model_inline_impl.hh Deleted after being copied to multiple locations: src/model/solid_mechanics/materials/material_damage/material_mazars.cc src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.cc src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_non_local.cc src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.hh src/solver/sparse_solver_inline_impl.hh
	M			src/model/model.cc
	M			src/model/model.hh
	M			src/model/model_couplers/coupler_solid_cohesive_contact.cc
	M			src/model/model_couplers/coupler_solid_contact.cc
	M			src/model/model_couplers/coupler_solid_contact.hh
	M			src/model/model_couplers/coupler_solid_contact_tmpl.hh
	M			src/model/model_couplers/coupler_solid_phasefield.cc
	M			src/model/model_couplers/coupler_solid_phasefield.hh
	M			src/model/model_inline_impl.hh
	M			src/model/phase_field/phase_field_model.cc
	M			src/model/phase_field/phase_field_model.hh
	M			src/model/phase_field/phase_field_model_inline_impl.cc
	M			src/model/phase_field/phasefield.cc
	M			src/model/phase_field/phasefield.hh
	M			src/model/phase_field/phasefield_inline_impl.cc
	M			src/model/phase_field/phasefield_selector.hh
	M			src/model/phase_field/phasefield_selector_tmpl.hh
	M			src/model/phase_field/phasefields/phasefield_exponential.cc
	M			src/model/phase_field/phasefields/phasefield_exponential.hh
	M			src/model/phase_field/phasefields/phasefield_exponential_inline_impl.hh
	M			src/model/solid_mechanics/material.cc
	M			src/model/solid_mechanics/material.hh
	M			src/model/solid_mechanics/material_inline_impl.hh
	M			src/model/solid_mechanics/material_selector.hh
	M			src/model/solid_mechanics/material_selector_tmpl.hh
	M			src/model/solid_mechanics/materials/internal_field.hh
	M			src/model/solid_mechanics/materials/internal_field_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
	M			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
	M			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage_non_local.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo.cc
	M			src/model/solid_mechanics/materials/material_damage/material_marigo.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.cc
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.hh
	P			src/model/solid_mechanics/materials/material_damage/material_mazars.cc Copied from src/model/heat_transfer/heat_transfer_model_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_mazars.hh
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.hh
	P			src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.cc Copied from src/model/heat_transfer/heat_transfer_model_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.hh
	A			src/model/solid_mechanics/materials/material_damage/material_mazars_non_local_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_phasefield.cc
	M			src/model/solid_mechanics/materials/material_damage/material_phasefield.hh
	M			src/model/solid_mechanics/materials/material_damage/material_phasefield_inline_impl.hh
	P			src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars.cc Copied from test/test_model/test_contact_mechanics_model/test_resolution/test_explicit_resolution.cc
	P			src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars.hh Copied from test/test_model/test_contact_mechanics_model/test_resolution/test_explicit_resolution.cc
	M			src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_inline_impl.hh
	P			src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_non_local.cc Copied from src/model/heat_transfer/heat_transfer_model_inline_impl.hh
	P			src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_non_local.hh Copied from src/fe_engine/element_type_conversion.hh
	M			src/model/solid_mechanics/materials/material_elastic.cc
	M			src/model/solid_mechanics/materials/material_elastic.hh
	M			src/model/solid_mechanics/materials/material_elastic_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
	M			src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_non_local.hh
	M			src/model/solid_mechanics/materials/material_non_local_tmpl.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_drucker_prager.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_drucker_prager.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_drucker_prager_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
	P			src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.hh Copied from src/model/heat_transfer/heat_transfer_model_inline_impl.hh
	M			src/model/solid_mechanics/materials/material_thermal.cc
	M			src/model/solid_mechanics/materials/material_thermal.hh
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.hh
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.cc
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
	M			src/model/solid_mechanics/materials/plane_stress_toolbox.hh
	M			src/model/solid_mechanics/materials/plane_stress_toolbox_tmpl.hh
	A			src/model/solid_mechanics/materials/weight_functions/damaged_weight_function.cc
	M			src/model/solid_mechanics/materials/weight_functions/damaged_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/damaged_weight_function_inline_impl.hh
	A			src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function.cc
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function_inline_impl.hh
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_inline_impl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_io.cc
	M			src/model/solid_mechanics/solid_mechanics_model_mass.cc
	M			src/model/solid_mechanics/solid_mechanics_model_material.cc
	M			src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_2.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
	M			src/model/structural_mechanics/structural_mechanics_model.cc
	M			src/model/structural_mechanics/structural_mechanics_model.hh
	M			src/model/structural_mechanics/structural_mechanics_model_inline_impl.hh
	M			src/model/structural_mechanics/structural_mechanics_model_mass.cc
	M			src/solver/solver_petsc.cc
	M			src/solver/solver_petsc.hh
	M			src/solver/solver_vector.hh
	M			src/solver/solver_vector_petsc.cc
	M			src/solver/solver_vector_petsc.hh
	M			src/solver/sparse_matrix.hh
	M			src/solver/sparse_matrix_aij.cc
	M			src/solver/sparse_matrix_aij.hh
	M			src/solver/sparse_matrix_aij_inline_impl.hh
	M			src/solver/sparse_matrix_petsc.cc
	M			src/solver/sparse_matrix_petsc.hh
	M			src/solver/sparse_solver.hh
	V			src/{solver/sparse_solver_inline_impl.hh ← model/heat_transfer/heat_transfer_model_inline_impl.hh}
	M			src/solver/sparse_solver_mumps.cc
	M			src/solver/sparse_solver_mumps.hh
	M			src/solver/terms_to_assemble.hh
	M			src/synchronizer/communication_buffer.hh
	M			src/synchronizer/communication_buffer_inline_impl.hh
	M			src/synchronizer/communication_descriptor.hh
	M			src/synchronizer/communication_descriptor_tmpl.hh
	M			src/synchronizer/communication_request.hh
	M			src/synchronizer/communication_tag.hh
	M			src/synchronizer/communications.hh
	M			src/synchronizer/communications_tmpl.hh
	M			src/synchronizer/communicator.cc
	M			src/synchronizer/communicator.hh
	M			src/synchronizer/communicator_dummy_inline_impl.hh
	M			src/synchronizer/communicator_mpi_inline_impl.hh
	M			src/synchronizer/data_accessor.cc
	M			src/synchronizer/data_accessor.hh
	M			src/synchronizer/dof_synchronizer.cc
	M			src/synchronizer/dof_synchronizer.hh
	M			src/synchronizer/dof_synchronizer_inline_impl.hh
	M			src/synchronizer/element_info_per_processor.cc
	M			src/synchronizer/element_info_per_processor.hh
	M			src/synchronizer/element_info_per_processor_tmpl.hh
	M			src/synchronizer/element_synchronizer.cc
	M			src/synchronizer/element_synchronizer.hh
	M			src/synchronizer/facet_synchronizer.cc
	M			src/synchronizer/facet_synchronizer.hh
	M			src/synchronizer/grid_synchronizer.cc
	M			src/synchronizer/master_element_info_per_processor.cc
	M			src/synchronizer/node_info_per_processor.cc
	M			src/synchronizer/node_info_per_processor.hh
	M			src/synchronizer/node_synchronizer.cc
	M			src/synchronizer/node_synchronizer.hh
	M			src/synchronizer/node_synchronizer_inline_impl.hh
	M			src/synchronizer/periodic_node_synchronizer.cc
	M			src/synchronizer/periodic_node_synchronizer.hh
	M			src/synchronizer/slave_element_info_per_processor.cc
	M			src/synchronizer/synchronizer.hh
	M			src/synchronizer/synchronizer_impl.hh
	M			src/synchronizer/synchronizer_impl_tmpl.hh
	M			src/synchronizer/synchronizer_tmpl.hh
	M			test/ci/codeclimate/codeclimate-clang-tidy/lib/command.py
	M			test/ci/codeclimate/codeclimate-clang-tidy/lib/issue_formatter.py
	M			test/ci/codeclimate/codeclimate-clang-tidy/lib/runner.py
	M			test/ci/codeclimate/codeclimate-clang-tidy/lib/workspace.py
	M			test/ci/debian:bullseye/Dockerfile
	M			test/ci/manylinux:2014_x86_64/Dockerfile
	M			test/ci/manylinux:2014_x86_64/spack.yaml
	M			test/ci/scripts/codequality/issue_generator_clang_format.py
	M			test/ci/scripts/codequality/issue_generator_warnings.py
	A			test/ci/scripts/codequality2emacs.sh
	M			test/ci/ubuntu:lts/Dockerfile
	M			test/test_common/test_array.cc
	M			test/test_common/test_csr.cc
	M			test/test_common/test_grid.cc
	M			test/test_common/test_tensors.cc
	D			test/test_common/test_types.cc
	M			test/test_common/test_voigt_helper.cc
	M			test/test_fe_engine/CMakeLists.txt
	M			test/test_fe_engine/py_engine/py_engine.py
	M			test/test_fe_engine/test_facet_element_mapping.cc
	M			test/test_fe_engine/test_fe_engine_fixture.hh
	M			test/test_fe_engine/test_fe_engine_inradius.cc
	M			test/test_fe_engine/test_fe_engine_precomputation.cc
	M			test/test_fe_engine/test_fe_engine_precomputation_bernoulli_2.cc
	M			test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
	M			test/test_fe_engine/test_fe_engine_precomputation_structural.cc
	M			test/test_fe_engine/test_gradient.cc
	M			test/test_fe_engine/test_integrate.cc
	M			test/test_fe_engine/test_interpolate.cc
	M			test/test_fe_engine/test_interpolate_bernoulli_beam_2.cc
	M			test/test_fe_engine/test_inverse_map.cc
	M			test/test_fe_engine/test_mesh_data.cc
	M			test/test_geometry/test_segment_intersection_tetrahedron_4.cc
	M			test/test_geometry/test_segment_intersection_triangle_3.cc
	M			test/test_gtest_utils.hh
	M			test/test_io/test_dumper/test_dumper.cc
	M			test/test_io/test_parser/test_parser.cc
	M			test/test_io/test_parser/test_parser.verified
	M			test/test_mesh/test_mesh_periodic.cc
	V			{test/test_mesh_utils/test_buildfacets/CMakeLists.txt ← packages/lapack.cmake}
	V			test/test_mesh_utils/test_buildfacets/{_hexahedron_20.msh ← hexahedron_20.msh}
	V			test/test_mesh_utils/test_buildfacets/{_hexahedron_20_pentahedron_15.msh ← mixed3d_quadratic.msh}
	V			test/test_mesh_utils/test_buildfacets/{_hexahedron_8.msh ← hexahedron_8.msh}
	V			test/test_mesh_utils/test_buildfacets/{_hexahedron_8_pentahedron_6.msh ← mixed3d_linear.msh}
	V			test/test_mesh_utils/test_buildfacets/{_pentahedron_15.msh ← pentahedron_15.msh}
	V			test/test_mesh_utils/test_buildfacets/{_pentahedron_6.msh ← pentahedron_6.msh}
	V			test/test_mesh_utils/test_buildfacets/{_quadrangle_4.msh ← quadrangle_4.msh}
	V			test/test_mesh_utils/test_buildfacets/{_quadrangle_4_triangle_3.msh ← mixed2d_linear.msh}
	V			test/test_mesh_utils/test_buildfacets/{_quadrangle_8.msh ← quadrangle_8.msh}
	V			test/test_mesh_utils/test_buildfacets/{_quadrangle_8_triangle_6.msh ← mixed2d_quadratic.msh}
	V			test/test_mesh_utils/test_buildfacets/{_tetrahedron_10.msh ← tetrahedron_10.msh}
	V			test/test_mesh_utils/test_buildfacets/{_triangle_3.msh ← triangle_3.msh}
	V			test/test_mesh_utils/test_buildfacets/{_triangle_6.msh ← triangle_6.msh}
	V			test/test_mesh_utils/test_buildfacets/{hexahedron_20.msh → _hexahedron_20.msh}
	V			test/test_mesh_utils/test_buildfacets/{hexahedron_8.msh → _hexahedron_8.msh}
	V			test/test_mesh_utils/test_buildfacets/{mixed2d_linear.msh → _quadrangle_4_triangle_3.msh}
	V			test/test_mesh_utils/test_buildfacets/{mixed2d_quadratic.msh → _quadrangle_8_triangle_6.msh}
	V			test/test_mesh_utils/test_buildfacets/{mixed3d_linear.msh → _hexahedron_8_pentahedron_6.msh}
	V			test/test_mesh_utils/test_buildfacets/{mixed3d_quadratic.msh → _hexahedron_20_pentahedron_15.msh}
	V			test/test_mesh_utils/test_buildfacets/{pentahedron_15.msh → _pentahedron_15.msh}
	V			test/test_mesh_utils/test_buildfacets/{pentahedron_6.msh → _pentahedron_6.msh}
	V			test/test_mesh_utils/test_buildfacets/{quadrangle_4.msh → _quadrangle_4.msh}
	V			test/test_mesh_utils/test_buildfacets/{quadrangle_8.msh → _quadrangle_8.msh}
	A			test/test_mesh_utils/test_buildfacets/test_buildfacets.cc
	A			test/test_mesh_utils/test_buildfacets/test_buildfacets_gtest.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_linear.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_linear.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_quadratic.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_quadratic.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_linear.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_linear.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_quadratic.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_quadratic.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_15.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_15.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_6.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_6.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_4.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_4.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_8.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_quadrangle_8.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron_10.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_tetrahedron_10.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_3.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_3.verified
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_6.cc
	D			test/test_mesh_utils/test_buildfacets/test_buildfacets_triangle_6.verified
	V			test/test_mesh_utils/test_buildfacets/{tetrahedron_10.msh → _tetrahedron_10.msh}
	V			test/test_mesh_utils/test_buildfacets/{triangle_3.msh → _triangle_3.msh}
	V			test/test_mesh_utils/test_buildfacets/{triangle_6.msh → _triangle_6.msh}
	M			test/test_mesh_utils/test_mesh_io/test_mesh_io_msh_physical_names.cc
	M			test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
	M			test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_scotch.cc
	M			test/test_mesh_utils/test_segment_nodetype/test_segment_nodetype.cc
	M			test/test_model/patch_tests/data/CMakeLists.txt
	M			test/test_model/patch_tests/patch_test_linear_anisotropic_explicit.cc
	M			test/test_model/patch_tests/patch_test_linear_anisotropic_implicit.cc
	M			test/test_model/patch_tests/patch_test_linear_elastic_explicit.cc
	M			test/test_model/patch_tests/patch_test_linear_elastic_implicit.cc
	M			test/test_model/patch_tests/patch_test_linear_fixture.hh
	M			test/test_model/patch_tests/patch_test_linear_heat_transfer_explicit.cc
	M			test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.py
	M			test/test_model/patch_tests/patch_test_linear_heat_transfer_implicit.cc
	M			test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.hh
	M			test/test_model/patch_tests/test_lumped_mass.cc
	M			test/test_model/test_common/test_dof_manager.cc
	M			test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.py
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/plot_neighborhoods.py
	M			test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_material.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_material.hh
	M			test/test_model/test_common/test_non_local_toolbox/test_material_damage.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_material_damage.hh
	M			test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_non_local_neighborhood_base.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_non_local_neighborhood_base.verified
	M			test/test_model/test_common/test_non_local_toolbox/test_pair_computation.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_remove_damage_weight_function.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_weight_computation.cc
	M			test/test_model/test_contact_mechanics_model/test_coupler/test_contact_coupling.cc
	M			test/test_model/test_contact_mechanics_model/test_coupler/test_coupled_stiffness.cc
	M			test/test_model/test_contact_mechanics_model/test_explicit_dynamic.cc
	M			test/test_model/test_contact_mechanics_model/test_explicit_friction.cc
	P			test/test_model/test_contact_mechanics_model/test_resolution/test_explicit_resolution.cc Copied to multiple locations: src/model/contact_mechanics/geometry_utils.cc src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars.cc src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars.hh
	M			test/test_model/test_phase_field_model/test_multi_material.cc
	M			test/test_model/test_phase_field_model/test_phase_field_anisotropic.cc
	M			test/test_model/test_phase_field_model/test_phase_solid_coupling.cc
	M			test/test_model/test_phase_field_model/test_phase_solid_explicit.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_1d_element/test_cohesive_1d_element.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/test_cohesive_buildfragments.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_fatigue.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_quadrangle.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_tetrahedron.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_group_update.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_quadrangle.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron_fragmentation.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic_impl/test_cohesive_intrinsic_impl.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_facet_stress_synchronizer/test_cohesive_facet_stress_synchronizer.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_buildfragments/test_cohesive_parallel_buildfragments.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron_displacement.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic_IG_TG/test_cohesive_parallel_extrinsic_IG_TG.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_insertion/test_cohesive_parallel_insertion_along_physical_surfaces.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_insertion/test_cohesive_parallel_intrinsic_implicit_insertion.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_intrinsic/test_cohesive_parallel_intrinsic.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_intrinsic/test_cohesive_parallel_intrinsic_tetrahedron.cc
	M			test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
	M			test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
	M			test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
	M			test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_dynamics.cc
	M			test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_quasistatic.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/local_material_damage_inline_impl.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_finite_deformation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_interpolate_stress.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_damage_non_local.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_non_local.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_orthotropic.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation_tension.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_multi_material_elastic.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_dynamics.cc
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_large_rotation.cc
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
	M			test/test_model/test_structural_mechanics_model/CMakeLists.txt
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_2.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_discrete_kirchhoff_triangle_18.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
	M			test/test_python_interface/CMakeLists.txt
	M			test/test_python_interface/test_common.cc
	M			test/test_solver/test_petsc_matrix_apply_boundary.cc
	M			test/test_solver/test_petsc_matrix_diagonal.cc
	M			test/test_solver/test_petsc_matrix_profile.cc
	M			test/test_solver/test_petsc_matrix_profile_parallel.cc
	M			test/test_solver/test_solver_petsc.cc
	M			test/test_solver/test_sparse_matrix_assemble.cc
	M			test/test_solver/test_sparse_matrix_product.cc
	M			test/test_solver/test_sparse_matrix_profile.cc
	M			test/test_solver/test_sparse_matrix_profile_parallel.cc
	M			test/test_solver/test_sparse_solver_mumps.cc
	M			test/test_synchronizer/test_data_accessor.hh
	M			test/test_synchronizer/test_data_distribution.cc
	M			test/test_synchronizer/test_dof_synchronizer.cc
	M			test/test_synchronizer/test_dof_synchronizer_communication.cc
	M			test/test_synchronizer/test_grid_synchronizer.cc
	M			test/test_synchronizer/test_grid_synchronizer_check_neighbors.cc
	M			test/test_synchronizer/test_grid_tools.hh
	M			test/test_synchronizer/test_node_synchronizer.cc
	M			test/test_synchronizer/test_synchronizers_fixture.hh
	M			third-party/akantu_iterators/.clang-tidy
	M			third-party/akantu_iterators/CMakeLists.txt
	M			third-party/akantu_iterators/cmake/GTest.cmake
	M			third-party/akantu_iterators/include/aka_compatibilty_with_cpp_standard.hh
	M			third-party/akantu_iterators/include/aka_iterators.hh
	A			third-party/akantu_iterators/include/aka_named_tuple.hh
	M			third-party/akantu_iterators/include/aka_str_hash.hh
	M			third-party/akantu_iterators/include/aka_tuple_tools.hh
	M			third-party/akantu_iterators/include/iterators/aka_arange_iterator.hh
	M			third-party/akantu_iterators/include/iterators/aka_concatenate_iterator.hh
	M			third-party/akantu_iterators/include/iterators/aka_enumerate_iterator.hh
	M			third-party/akantu_iterators/include/iterators/aka_filter_iterator.hh
	M			third-party/akantu_iterators/include/iterators/aka_iterator_tools.hh
	A			third-party/akantu_iterators/include/iterators/aka_repeat_iterator.hh
	M			third-party/akantu_iterators/include/iterators/aka_transform_iterator.hh
	M			third-party/akantu_iterators/include/iterators/aka_zip_iterator.hh
	M			third-party/akantu_iterators/test/test_iterators.cc
	M			third-party/akantu_iterators/test/test_tuples.cc
	A			third-party/cmake/eigen3.cmake
	M			third-party/cmake/pybind11.cmake
	A			third-party/eigen3.cmake.in
	M			third-party/iohelper/src/CMakeLists.txt
	M			third-party/iohelper/src/dumper_lammps.hh
	M			third-party/iohelper/src/dumper_text.hh
	M			third-party/iohelper/src/field.hh
	M			third-party/iohelper/src/iohelper_common.hh
	M			third-party/iohelper/src/paraview_helper.hh
	M			third-party/iohelper/src/paraview_helper.tcc