Diffusion akantu fd65bfe537f1

Merge branch 'master' of lsmssrv1.epfl.ch:akantu
fd65bfe537f1
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Authored by Aurelia Cuba Ramos <aurelia.cubaramos@epfl.ch> on Dec 16 2015, 13:05.

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Merge branch 'master' of lsmssrv1.epfl.ch:akantu

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Committed

Aurelia Cuba Ramos <aurelia.cubaramos@epfl.ch>

Dec 16 2015, 13:05

Pushed

richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

Parents

rAKAf87b8f54ee65: Merge branch 'master' of lsmssrv1.epfl.ch:akantu
rAKAa339de614273: testing of non-local damage completed

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Aurelia Cuba Ramos <aurelia.cubaramos@epfl.ch> committed rAKAfd65bfe537f1: Merge branch 'master' of lsmssrv1.epfl.ch:akantu (authored by Aurelia Cuba Ramos <aurelia.cubaramos@epfl.ch>).Dec 16 2015, 13:05

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
f87b8f54ee65	fabarras	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 14 2015
01bfa944af30	fabarras	ticket #129 add cheesy parser example	Dec 14 2015
4447e9a351cd	richart	Merge branch 'master' of gitolite-richart:akantu	Dec 14 2015
d27754922c2f	fabarras	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 14 2015
50e2f77d9be9	fabarras	ticket #128 section dedicated to input file in user manual	Dec 14 2015
c7fa99546210	richart	removing generated files in the sources	Dec 14 2015
7899d2267cfd	richart	Remade the changes of with a git mv instead of mv [closes #76]	Dec 14 2015
4bbe42d036d2	richart	Merge branch 'master' of gitolite-richart:akantu	Dec 14 2015
3c8d3d807f9c	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 14 2015
f453f86b1941	richart	Revert "add sub directories for cohesive and embedded in smm"	Dec 14 2015
4d67516af78c	richart	Revert "add sub directories in package file"	Dec 14 2015
53d557c7b79f	richart	Revert "add sub directories in package file"	Dec 14 2015
c52be25b2a3a	richart	Revert "add sub directories in package file"	Dec 14 2015
dda027523015	jcho	add sub directories in package file	Dec 13 2015
0e4c954167a2	jcho	add sub directories in package file	Dec 13 2015
7e3ac8438716	jcho	add sub directories in package file	Dec 13 2015
0d89ae1093cf	jcho	add sub directories for cohesive and embedded in smm	Dec 13 2015
6fffeec69af2	richart	Modifications for boost	Dec 11 2015
17b892f21081	anciaux	remove the debug tools as required by a ticket	Dec 10 2015
baa5c7c9b92e	yilmaz	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 10 2015
74787b564376	yilmaz	changes in manual for ticket 92 (addition of bc example with element group)	Dec 10 2015
b71b9c44c3fc	Lucas Frérot	fixed doxygen for Vector, Matrix and Tensor3	Dec 10 2015
44bf128800e2	richart	OpenMPI seems to not define the max tag	Dec 10 2015
4ddead2f89f4	richart	conflit not correctly corrected	Dec 10 2015
2be8a88b8197	richart	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 10 2015
3970dec2a337	richart	extending to full support of the MPI reduce operations	Dec 10 2015
03cb04327133	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 9 2015
8c77aed52b0c	corrado	added comments and code cleaning in some functions involved in the…	Dec 9 2015
c17ed228b8ca	Lucas Frérot	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 8 2015
b90648112933	Lucas Frérot	added doc for Tensor3 and changed [] operator in Tensor3	Dec 8 2015
f9c5e0db88e7	Valentine	pour pouvoir puller puis pusher	Dec 8 2015
34055c2b6f26	Valentine	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 8 2015
98ea3fa4eff0	Valentine	comments for synchronizer for doxygens doc (ticket 109)	Dec 8 2015
686ac09f1c08	anciaux	removing some more clang warnings	Dec 8 2015
951172a5e494	anciaux	update submodules	Dec 8 2015
c7b68f1be30c	anciaux	update submodules	Dec 8 2015
05d4cbdcaf2e	anciaux	remove generated file	Dec 8 2015
a0c4da72abda	anciaux	remove the manual oops	Dec 8 2015
b4f38a7e8cc1	anciaux	fixing some more compilation troubles	Dec 8 2015
2fbe060c93b9	anciaux	merging	Dec 8 2015
273337d4079f	anciaux	compilation with clang ok	Dec 8 2015
4e7ce66cc86d	richart	Commenting mesh events [closes #97]	Dec 7 2015
d32375c6bdb6	richart	Bug fix for real	Dec 7 2015
ef53f4da184f	richart	Bug fix	Dec 7 2015
1900ee00ba64	richart	Changes from DEPENDENCIES to DEPENDS	Dec 7 2015
322365359e4c	fabarras	fixing cohesive element model for python interface	Dec 7 2015
9eef8a41211f	richart	Comments in .rst don't work for old versions of cmake	Dec 7 2015
86ac9d7176b6	richart	Adding comments in cppargparse - close: #127	Dec 7 2015
318a3c97fdfa	richart	Changes in MeshIOMSH for <CRLF> files + some cleaning and indentation	Dec 7 2015
ba6c6c02a25e	richart	Changes in the way tests are handeld, need further changes for python tests	Dec 7 2015

Changes (144)
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Very Large Commit

This commit is very large. Load each file individually.

		Path
M		cmake/AkantuInstall.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakePackagesSystemGlobalFunctions.cmake
M		cmake/Modules/FindScotch.cmake
A		cmake/akantu_test_driver.sh
M		doc/doxygen/akantu.dox.in
M		doc/manual/manual-bibliography.bib
M		doc/manual/manual-cohesive_elements_insertion.tex
M		doc/manual/manual-constitutive-laws-non_local.tex
M		doc/manual/manual-constitutive-laws.tex
M		doc/manual/manual-gettingstarted.tex
M		doc/manual/manual-io.tex
M		doc/manual/manual-solidmechanicsmodel.tex
M		examples/CMakeLists.txt
A	(dir)	examples/embedded/
P		examples/embedded/CMakeLists.txt Copied from test/test_mesh_utils/test_pbc_tweak/CMakeLists.txt
A		examples/embedded/concrete.geo
A		examples/embedded/embedded.cc
A		examples/embedded/material.dat
A		examples/embedded/reinforcement.geo
M		examples/io/CMakeLists.txt
A	(dir)	examples/io/parser/
P		examples/io/parser/CMakeLists.txt Copied from test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/CMakeLists.txt
A		examples/io/parser/example_parser.cc
A		examples/io/parser/input_file.dat
A		examples/io/parser/swiss_cheese.geo
M	(sub)	extra_packages/extra-materials
M	(sub)	extra_packages/igfem
M	(sub)	extra_packages/parallel-cohesive-element
M	(sub)	extra_packages/phase-field
M		packages/blas.cmake
M		packages/boost.cmake
M		packages/cohesive_element.cmake
M		packages/core_cxx11.cmake
D		packages/debug_tools.cmake
M		packages/embedded.cmake
M		python/swig/solid_mechanics_model_cohesive.i
M		src/common/aka_array.hh
M		src/common/aka_bounding_box.cc
M		src/common/aka_common.hh
M		src/common/aka_config.hh.in
D		src/common/aka_debug_tools.hh
M		src/common/aka_types.hh
M		src/fe_engine/fe_engine_template.hh
M		src/io/dumper/dumper_field.hh
M		src/io/mesh_io/mesh_io_abaqus.cc
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/mesh_io/mesh_io_msh_struct.cc
M		src/io/parser/cppargparse/cppargparse.hh
M		src/io/parser/cppargparse/cppargparse_tmpl.hh
M		src/io/parser/parser_random.cc
M		src/mesh/group_manager_inline_impl.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_events.hh
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_manager.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/heat_transfer/heat_transfer_model_inline_impl.cc
V		src/model/solid_mechanics/{ → solid_mechanics_model_embedded_interface}/embedded_interface_intersector.cc
V		src/model/solid_mechanics/{ → solid_mechanics_model_embedded_interface}/embedded_interface_intersector.hh
V		src/model/solid_mechanics/{ → solid_mechanics_model_embedded_interface}/embedded_interface_model.cc
V		src/model/solid_mechanics/{ → solid_mechanics_model_embedded_interface}/embedded_interface_model.hh
V		src/model/solid_mechanics/{ → solid_mechanics_model_cohesive}/fragment_manager.cc
V		src/model/solid_mechanics/{ → solid_mechanics_model_cohesive}/fragment_manager.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.cc
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.cc
M		src/model/solid_mechanics/materials/material_non_local.cc
M		src/model/solid_mechanics/materials/material_non_local.hh
M		src/model/solid_mechanics/materials/random_internal_field.hh
M		src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
A	(dir)	src/model/solid_mechanics/solid_mechanics_model_cohesive/
V		src/model/solid_mechanics/{ → solid_mechanics_model_cohesive}/solid_mechanics_model_cohesive.cc
V		src/model/solid_mechanics/{ → solid_mechanics_model_cohesive}/solid_mechanics_model_cohesive.hh
V		src/model/solid_mechanics/{solid_mechanics_model_cohesive ← }/fragment_manager.cc
V		src/model/solid_mechanics/{solid_mechanics_model_cohesive ← }/fragment_manager.hh
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.cc
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
V		src/model/solid_mechanics/{solid_mechanics_model_cohesive ← }/solid_mechanics_model_cohesive.cc
V		src/model/solid_mechanics/{solid_mechanics_model_cohesive ← }/solid_mechanics_model_cohesive.hh
V		src/model/solid_mechanics/{solid_mechanics_model_cohesive ← }/solid_mechanics_model_cohesive_inline_impl.cc
V		src/model/solid_mechanics/{ → solid_mechanics_model_cohesive}/solid_mechanics_model_cohesive_inline_impl.cc
A	(dir)	src/model/solid_mechanics/solid_mechanics_model_embedded_interface/
V		src/model/solid_mechanics/{solid_mechanics_model_embedded_interface ← }/embedded_interface_intersector.cc
V		src/model/solid_mechanics/{solid_mechanics_model_embedded_interface ← }/embedded_interface_intersector.hh
V		src/model/solid_mechanics/{solid_mechanics_model_embedded_interface ← }/embedded_interface_model.cc
V		src/model/solid_mechanics/{solid_mechanics_model_embedded_interface ← }/embedded_interface_model.hh
M		src/solver/solver.hh
M		src/synchronizer/data_accessor.hh
M		src/synchronizer/distributed_synchronizer.cc
M		src/synchronizer/distributed_synchronizer.hh
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/filtered_synchronizer.hh
M		src/synchronizer/grid_synchronizer.hh
M		src/synchronizer/real_static_communicator.hh
M		src/synchronizer/static_communicator.hh
M		src/synchronizer/static_communicator_dummy.hh
M		src/synchronizer/static_communicator_inline_impl.hh
M		src/synchronizer/static_communicator_mpi.cc
M		src/synchronizer/static_communicator_mpi.hh
M		src/synchronizer/synchronizer.hh
M		test/test_common/CMakeLists.txt
M		test/test_contact/CMakeLists.txt
M		test/test_fe_engine/CMakeLists.txt
M		test/test_mesh_utils/test_mesh_io/CMakeLists.txt
M		test/test_mesh_utils/test_mesh_partitionate/CMakeLists.txt
P		test/test_mesh_utils/test_pbc_tweak/CMakeLists.txt Copied to multiple locations: examples/embedded/CMakeLists.txt test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/CMakeLists.txt
M		test/test_model/test_heat_transfer_model/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/material_elastic_plane_strain.dat
M		test/test_model/test_solid_mechanics_model/patch_tests/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/patch_tests/data/material_check_stress_plane_strain.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_1d_element/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/CMakeLists.txt
P		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/CMakeLists.txt Copied to examples/io/parser/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
A	(dir)	test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/
A	(sym)	test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/.#back
P		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/CMakeLists.txt Copied from test/test_mesh_utils/test_pbc_tweak/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.dat
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.geo
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/CMakeLists.txt
M		test/test_model/test_structural_mechanics_model/CMakeLists.txt
M		test/test_solver/CMakeLists.txt
M		test/test_synchronizer/CMakeLists.txt