Merge pull request #585 from akohlmey/make-py-manual-cleanup
3cd597e948fa
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Authored by sjplimp <sjplimp@sandia.gov> on Jul 20 2017, 20:05.

Description

Merge pull request #585 from akohlmey/make-py-manual-cleanup

Make.py removal and manual cleanup

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Committed

GitHub <noreply@github.com>

Jul 20 2017, 20:05

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPSbdd2f3a6b2c7: remove references to Make.py and USER-CUDA
rLAMMPSeca61226c267: Merge pull request #583 from giacomofiorin/colvars-update-2017-07-19

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GitHub <noreply@github.com> committed rLAMMPS3cd597e948fa: Merge pull request #585 from akohlmey/make-py-manual-cleanup (authored by sjplimp <sjplimp@sandia.gov>).Jul 20 2017, 20:05

Merged Changes

	Commit			Author	Details	Committed
	bdd2f3a6b2c7			Axel Kohlmeyer	remove references to Make.py and USER-CUDA	Jul 20 2017
	a351977c5904			Axel Kohlmeyer	update manual links that got broken when removing and renumbering a section	Jul 20 2017

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				Path
	M			bench/FERMI/README
	M			bench/README
	M			doc/src/Manual.txt
	M			doc/src/Section_accelerate.txt
	M			doc/src/Section_errors.txt
	M			doc/src/Section_howto.txt
	M			doc/src/Section_packages.txt
	M			doc/src/Section_python.txt
	M			doc/src/Section_start.txt
	M			doc/src/accelerate_gpu.txt
	M			doc/src/accelerate_intel.txt
	M			doc/src/accelerate_kokkos.txt
	M			doc/src/accelerate_omp.txt
	M			doc/src/accelerate_opt.txt
	M			doc/src/angle_charmm.txt
	M			doc/src/angle_class2.txt
	M			doc/src/angle_cosine.txt
	M			doc/src/angle_cosine_delta.txt
	M			doc/src/angle_cosine_periodic.txt
	M			doc/src/angle_cosine_shift.txt
	M			doc/src/angle_cosine_shift_exp.txt
	M			doc/src/angle_cosine_squared.txt
	M			doc/src/angle_fourier.txt
	M			doc/src/angle_fourier_simple.txt
	M			doc/src/angle_harmonic.txt
	M			doc/src/angle_quartic.txt
	M			doc/src/angle_table.txt
	M			doc/src/balance.txt
	M			doc/src/bond_class2.txt
	M			doc/src/bond_fene.txt
	M			doc/src/bond_fene_expand.txt
	M			doc/src/bond_harmonic.txt
	M			doc/src/bond_harmonic_shift.txt
	M			doc/src/bond_harmonic_shift_cut.txt
	M			doc/src/bond_morse.txt
	M			doc/src/bond_nonlinear.txt
	M			doc/src/bond_quartic.txt
	M			doc/src/bond_table.txt
	M			doc/src/compute_pressure.txt
	M			doc/src/compute_temp.txt
	M			doc/src/compute_temp_partial.txt
	M			doc/src/dihedral_charmm.txt
	M			doc/src/dihedral_class2.txt
	M			doc/src/dihedral_cosine_shift_exp.txt
	M			doc/src/dihedral_fourier.txt
	M			doc/src/dihedral_harmonic.txt
	M			doc/src/dihedral_helix.txt
	M			doc/src/dihedral_multi_harmonic.txt
	M			doc/src/dihedral_nharmonic.txt
	M			doc/src/dihedral_opls.txt
	M			doc/src/dihedral_quadratic.txt
	M			doc/src/echo.txt
	M			doc/src/fix_addforce.txt
	M			doc/src/fix_aveforce.txt
	M			doc/src/fix_deform.txt
	M			doc/src/fix_enforce2d.txt
	M			doc/src/fix_freeze.txt
	M			doc/src/fix_gravity.txt
	M			doc/src/fix_langevin.txt
	M			doc/src/fix_momentum.txt
	M			doc/src/fix_nh.txt
	M			doc/src/fix_nph_asphere.txt
	M			doc/src/fix_nph_body.txt
	M			doc/src/fix_nph_sphere.txt
	M			doc/src/fix_nphug.txt
	M			doc/src/fix_npt_asphere.txt
	M			doc/src/fix_npt_body.txt
	M			doc/src/fix_npt_sphere.txt
	M			doc/src/fix_nve.txt
	M			doc/src/fix_nve_asphere.txt
	M			doc/src/fix_nve_sphere.txt
	M			doc/src/fix_nvt_asphere.txt
	M			doc/src/fix_nvt_body.txt
	M			doc/src/fix_nvt_sllod.txt
	M			doc/src/fix_nvt_sphere.txt
	M			doc/src/fix_qeq_comb.txt
	M			doc/src/fix_qeq_reax.txt
	M			doc/src/fix_reax_bonds.txt
	M			doc/src/fix_reaxc_species.txt
	M			doc/src/fix_rigid.txt
	M			doc/src/fix_setforce.txt
	M			doc/src/fix_shake.txt
	M			doc/src/fix_wall_reflect.txt
	M			doc/src/improper_class2.txt
	M			doc/src/improper_cossq.txt
	M			doc/src/improper_cvff.txt
	M			doc/src/improper_fourier.txt
	M			doc/src/improper_harmonic.txt
	M			doc/src/improper_ring.txt
	M			doc/src/improper_umbrella.txt
	M			doc/src/jump.txt
	M			doc/src/log.txt
	M			doc/src/neb.txt
	M			doc/src/neighbor.txt
	M			doc/src/next.txt
	M			doc/src/package.txt
	M			doc/src/pair_adp.txt
	M			doc/src/pair_agni.txt
	M			doc/src/pair_airebo.txt
	M			doc/src/pair_beck.txt
	M			doc/src/pair_born.txt
	M			doc/src/pair_brownian.txt
	M			doc/src/pair_buck.txt
	M			doc/src/pair_buck_long.txt
	M			doc/src/pair_charmm.txt
	M			doc/src/pair_class2.txt
	M			doc/src/pair_colloid.txt
	M			doc/src/pair_comb.txt
	M			doc/src/pair_coul.txt
	M			doc/src/pair_dipole.txt
	M			doc/src/pair_dpd.txt
	M			doc/src/pair_eam.txt
	M			doc/src/pair_edip.txt
	M			doc/src/pair_eim.txt
	M			doc/src/pair_gayberne.txt
	M			doc/src/pair_gran.txt
	M			doc/src/pair_gromacs.txt
	M			doc/src/pair_hbond_dreiding.txt
	M			doc/src/pair_hybrid.txt
	M			doc/src/pair_lj.txt
	M			doc/src/pair_lj96.txt
	M			doc/src/pair_lj_cubic.txt
	M			doc/src/pair_lj_expand.txt
	M			doc/src/pair_lj_long.txt
	M			doc/src/pair_lj_smooth.txt
	M			doc/src/pair_lj_smooth_linear.txt
	M			doc/src/pair_lj_soft.txt
	M			doc/src/pair_lubricate.txt
	M			doc/src/pair_meam_spline.txt
	M			doc/src/pair_morse.txt
	M			doc/src/pair_nb3b_harmonic.txt
	M			doc/src/pair_nm.txt
	M			doc/src/pair_peri.txt
	M			doc/src/pair_reaxc.txt
	M			doc/src/pair_resquared.txt
	M			doc/src/pair_sdk.txt
	M			doc/src/pair_soft.txt
	M			doc/src/pair_sw.txt
	M			doc/src/pair_table.txt
	M			doc/src/pair_tersoff.txt
	M			doc/src/pair_tersoff_mod.txt
	M			doc/src/pair_tersoff_zbl.txt
	M			doc/src/pair_thole.txt
	M			doc/src/pair_vashishta.txt
	M			doc/src/pair_yukawa.txt
	M			doc/src/pair_yukawa_colloid.txt
	M			doc/src/pair_zbl.txt
	M			doc/src/partition.txt
	M			doc/src/prd.txt
	M			doc/src/processors.txt
	M			doc/src/read_data.txt
	M			doc/src/read_restart.txt
	M			doc/src/region.txt
	M			doc/src/restart.txt
	M			doc/src/run_style.txt
	M			doc/src/suffix.txt
	M			doc/src/temper.txt
	M			doc/src/thermo_style.txt
	M			doc/src/timer.txt
	M			doc/src/variable.txt
	M			doc/src/write_data.txt
	M			doc/src/write_restart.txt
	M			examples/README
	M			examples/accelerate/README
	D			src/Make.py