Homec4science

Merge branch 'integration' into new-master

Authored by Axel Kohlmeyer <akohlmey@gmail.com> on Sep 29 2016, 16:37.

Description

Merge branch 'integration' into new-master

Event Timeline

Axel Kohlmeyer <akohlmey@gmail.com> committed rLAMMPS5b2becd09b97: Merge branch 'integration' into new-master (authored by Axel Kohlmeyer <akohlmey@gmail.com>).Sep 29 2016, 16:37

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.
CommitAuthorDetailsCommitted
596b260f5d48sjplimp/GitHub
Merge pull request #45 from akohlmey/small-bugfixes 
Sep 29 2016
446e7e736936Steve Plimpton
patch for allowing prd command to work with sorted atoms 
Sep 29 2016
8c1d0031c999Axel Kohlmeyer
correct typo in Make.py 
Sep 28 2016
829d11e88b9bsjplimp/GitHub
Merge pull request #44 from rbberger/doc-fixes 
Sep 27 2016
1adf3858a9bfAxel Kohlmeyer
correct bug and synchronize fix addforce respa level init with other fixes 
Sep 27 2016
96f31d6dade5sjplimp/GitHub
Merge pull request #43 from akohlmey/doc-fixes 
Sep 27 2016
35705217f4bbSteve Plimpton
enable multi-processor NEB replicas 
Sep 27 2016
9a2f7386731eSteve Plimpton
sync with SVN 
Sep 27 2016
f9c204972474Axel Kohlmeyer
need to ignore new fix cmap sources 
Sep 27 2016
e1c6b6b7d153Axel Kohlmeyer
correctly handle exceptions raised from subprocess module 
Sep 27 2016
a3a3af691c07Steve Plimpton
Merge branch 'balance' into integration 
Sep 27 2016
f9677e6d7b71Steve Plimpton
released version of weighted balancing 
Sep 27 2016
a3277117e250Richard Berger
Add filter which merges preformatted sections 
Sep 27 2016
67d4c07689a3Richard Berger
Do not escape underscore inside preformat blocks 
Sep 27 2016
877a5049332eRichard Berger
Fix typo in Section_howto.txt 
Sep 27 2016
8a951f9d7983Axel Kohlmeyer
fix typo 
Sep 27 2016
69a8842ecb81Axel Kohlmeyer
update load balance weights documentation for fix balance and balance 
Sep 27 2016
2af5c75f4269Axel Kohlmeyer
correct issue from merge 
Sep 27 2016
158599fca211Axel Kohlmeyer
Merge branch 'balance2' into weighted-balancing 
Sep 27 2016
7732548b3c0fAxel Kohlmeyer
correct issues related to the addition of fix cmap 
Sep 27 2016
2c5f6e1a993bAxel Kohlmeyer
fix a broken link that slipped through the cracks in the previous cleanup 
Sep 27 2016
d0aa13b5431cRichard Berger
Fix broken link in Section_packages.txt 
Sep 26 2016
c31b026797cfAxel Kohlmeyer
Merge branch 'integration' into weighted-balancing 
Sep 26 2016
47b52ed2ddf4Axel Kohlmeyer
Merge branch 'integration' into balance2 
Sep 26 2016
c87f9aeb9f4eRichard Berger
Merge remote-tracking branch 'akohlmey/integration' into ipython-update-and… 
Sep 26 2016
b97b9dd66188Steve Plimpton
new fix cmap command 
Sep 26 2016
86d17a578411sjplimp/GitHub
Merge pull request #42 from akohlmey/redo-fix-ti-spring-fixes 
Sep 23 2016
c00cd6192d9csjplimp/GitHub
Merge pull request #41 from akohlmey/doc-fixes 
Sep 23 2016
fc031c34bdddsjplimp/GitHub
Merge pull request #40 from akohlmey/eam-fixes-for-scale 
Sep 23 2016
d730cda2480fsjplimp/GitHub
Merge pull request #37 from rbberger/library_interface_abort 
Sep 23 2016
6f4b7268ded6Steve Plimpton
sync with SVN 
Sep 23 2016
08f0bf90253eSteve Plimpton
new verion of balance weighting 
Sep 23 2016
3d5f5bf40e58Axel Kohlmeyer
a few more consolidations of link anchors 
Sep 23 2016
065d35eefa45Axel Kohlmeyer
update kokkos compilation instructions to use provided preset makefiles 
Sep 23 2016
378524903330Axel Kohlmeyer
use "make mpi" instead of "make g++" in examples 
Sep 23 2016
e18941e865b8Axel Kohlmeyer
delete bogus line (how did this get into the docs?) 
Sep 23 2016
c6cebe66c75dAxel Kohlmeyer
making more links and anchors consistent and correct errors 
Sep 23 2016
08d9792ec854Axel Kohlmeyer
add an additional explanation to compute XXX/tally docs and fix a typo 
Sep 23 2016
c10aa55fc15dAxel Kohlmeyer
Merge branch 'integration' into doc-fixes 
Sep 22 2016
2bf6688388f9Axel Kohlmeyer
fix bug in fix_modify respa reported by steven early strong on lammps-users 
Sep 22 2016
b3217218d67bSteve Plimpton
doc page sync with SVN 
Sep 22 2016
d3406df6a0caRichard Berger
Updated instructions in IPython notebooks 
Sep 21 2016
a4c8c9b1f973Richard Berger
Strip IPython notebooks of output 
Sep 21 2016
f1183cb97c19Richard Berger
Remove old copies of IPython notebooks 
Sep 21 2016
68d6f105d018Axel Kohlmeyer
need to add removed fix ti/rs to purge list 
Sep 21 2016
b27179bbef55Axel Kohlmeyer
restore bugfixes and updates that were lost. flag time dependet. correct use of… 
Sep 21 2016
90ff54c44fa3Richard Berger
Ensure all library functions capture exceptions 
Sep 21 2016
2943dd5c12d6Axel Kohlmeyer
correct another broken link in fix ti/spring 
Sep 21 2016
33d9a55d358fAxel Kohlmeyer
remove references to docs for fix ti/rs 
Sep 21 2016
5345efb5b87fAxel Kohlmeyer
correct broken link in updated fix ti/spring docs 
Sep 21 2016