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Merge branch 'integration' into weighted-balancing

Authored by Axel Kohlmeyer <akohlmey@gmail.com> on Sep 26 2016, 21:20.

Description

Merge branch 'integration' into weighted-balancing

Event Timeline

Axel Kohlmeyer <akohlmey@gmail.com> committed rLAMMPSc31b026797cf: Merge branch 'integration' into weighted-balancing (authored by Axel Kohlmeyer <akohlmey@gmail.com>).Sep 26 2016, 21:20

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.
CommitAuthorDetailsCommitted
b97b9dd66188Steve Plimpton
new fix cmap command 
Sep 26 2016
86d17a578411sjplimp/GitHub
Merge pull request #42 from akohlmey/redo-fix-ti-spring-fixes 
Sep 23 2016
c00cd6192d9csjplimp/GitHub
Merge pull request #41 from akohlmey/doc-fixes 
Sep 23 2016
fc031c34bdddsjplimp/GitHub
Merge pull request #40 from akohlmey/eam-fixes-for-scale 
Sep 23 2016
d730cda2480fsjplimp/GitHub
Merge pull request #37 from rbberger/library_interface_abort 
Sep 23 2016
6f4b7268ded6Steve Plimpton
sync with SVN 
Sep 23 2016
3d5f5bf40e58Axel Kohlmeyer
a few more consolidations of link anchors 
Sep 23 2016
065d35eefa45Axel Kohlmeyer
update kokkos compilation instructions to use provided preset makefiles 
Sep 23 2016
378524903330Axel Kohlmeyer
use "make mpi" instead of "make g++" in examples 
Sep 23 2016
e18941e865b8Axel Kohlmeyer
delete bogus line (how did this get into the docs?) 
Sep 23 2016
c6cebe66c75dAxel Kohlmeyer
making more links and anchors consistent and correct errors 
Sep 23 2016
08d9792ec854Axel Kohlmeyer
add an additional explanation to compute XXX/tally docs and fix a typo 
Sep 23 2016
c10aa55fc15dAxel Kohlmeyer
Merge branch 'integration' into doc-fixes 
Sep 22 2016
2bf6688388f9Axel Kohlmeyer
fix bug in fix_modify respa reported by steven early strong on lammps-users 
Sep 22 2016
b3217218d67bSteve Plimpton
doc page sync with SVN 
Sep 22 2016
68d6f105d018Axel Kohlmeyer
need to add removed fix ti/rs to purge list 
Sep 21 2016
b27179bbef55Axel Kohlmeyer
restore bugfixes and updates that were lost. flag time dependet. correct use of… 
Sep 21 2016
90ff54c44fa3Richard Berger
Ensure all library functions capture exceptions 
Sep 21 2016
2943dd5c12d6Axel Kohlmeyer
correct another broken link in fix ti/spring 
Sep 21 2016
33d9a55d358fAxel Kohlmeyer
remove references to docs for fix ti/rs 
Sep 21 2016
5345efb5b87fAxel Kohlmeyer
correct broken link in updated fix ti/spring docs 
Sep 21 2016
9bedb8a1c9cfAxel Kohlmeyer
ignore generated files in html folder 
Sep 21 2016
0d7e4f1e8827Axel Kohlmeyer
update docs for pair style gauss/cut to document optional per pair cutoff 
Sep 21 2016
9ef748bbaaa9Steve Plimpton
remvoing doc/html 
Sep 21 2016
259177630a79Axel Kohlmeyer
whitespace cleanup 
Sep 20 2016
10034ce336d0Axel Kohlmeyer
port support for scale[] factor with fix adapt to OPT and USER-OMP 
Sep 20 2016
281ace327fb1Axel Kohlmeyer
we should scale energies as well as forces 
Sep 20 2016
c6ee5065ed20Axel Kohlmeyer
allow to override PairEAM::extract() 
Sep 20 2016
04eadb634194Richard Berger
Merge remote-tracking branch 'akohlmey/integration' into library_interface_abort 
Sep 20 2016
f4263e3849ecRichard Berger
Simplify MPI abort code path, make C++ exceptions optional 
Sep 20 2016
b4e28767760eRichard Berger
Fix typo 
Sep 20 2016
3a73a1476e2bAxel Kohlmeyer
disable use of fix adapt with EAM for GPU+KOKKOS and CDEAM 
Sep 20 2016
5c37fccf49c2Steve Plimpton
fix ti/spring for eam/allow and eam/fs 
Sep 20 2016
b9b044e180dfSteve Plimpton
new fix ti/spring command, remove fix ti/rs 
Sep 20 2016
7dc8746f9ec2sjplimp/GitHub
Merge pull request #39 from akohlmey/small-bugfixes 
Sep 20 2016
5d89493a1012sjplimp/GitHub
Merge pull request #38 from akohlmey/consolidate-pycache 
Sep 20 2016
7bb880f0a843Axel Kohlmeyer
remove debug code 
Sep 20 2016
849ff25d9206Axel Kohlmeyer
demote OMP_NUM_THREAD "warning" to "message" in the hope to be less confusing… 
Sep 20 2016
faa0b401aa91Axel Kohlmeyer
fix argument indexing bug in fix ave/atom 
Sep 20 2016
aa9fe38c5c97Axel Kohlmeyer
consolidate ignoring python bytecompiled cache files 
Sep 17 2016
719d7c65b6a0Richard Berger
Make exceptions control flow and functions optional 
Sep 17 2016
8db7ef436481Richard Berger
Merge remote-tracking branch 'akohlmey/integration' into library_interface_abort 
Sep 17 2016
d17421eb7c2esjplimp/GitHub
Merge pull request #36 from akohlmey/small_bugfixes_and_cleanups 
Sep 16 2016
60dfdbc06302sjplimp/GitHub
Merge pull request #35 from akohlmey/lj_sf_dipole_sf_correction 
Sep 16 2016
e4bd63759b96sjplimp/GitHub
Merge pull request #34 from rbberger/make_py_fixes 
Sep 16 2016
ca558f6712fesjplimp/GitHub
Merge pull request #33 from rbberger/pylammps_additions 
Sep 16 2016
abf05eed6171Steve Plimpton
comm tiled bug fix 
Sep 16 2016
72ce8ff89f56sjplimp/GitHub
Merge pull request #31 from akohlmey/doc-cleanups-and-updates 
Sep 16 2016
76d876f86165Richard Berger
Allow detection of MPI_Abort condition in library call 
Sep 16 2016
9637a5b5306fAxel Kohlmeyer
colvars bugfix. updates colvars library to version 2016-09-14 
Sep 16 2016

Very Large Commit

This commit is very large, and affects more than 1000 files. Changes are not shown.