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Merge branch 'balance' into integration

Authored by Steve Plimpton <sjplimp@sandia.gov> on Sep 27 2016, 18:53.

Description

Merge branch 'balance' into integration

Details

Committed
Steve Plimpton <sjplimp@sandia.gov>Sep 27 2016, 18:53
Pushed
jungeOct 19 2017, 09:53
Parents
rLAMMPSf9677e6d7b71: released version of weighted balancing
rLAMMPSb97b9dd66188: new fix cmap command
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Event Timeline

Steve Plimpton <sjplimp@sandia.gov> committed rLAMMPSa3a3af691c07: Merge branch 'balance' into integration (authored by Steve Plimpton <sjplimp@sandia.gov>).Sep 27 2016, 18:53

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.
CommitAuthorDetailsCommitted
f9677e6d7b71Steve Plimpton
released version of weighted balancing 
Sep 27 2016
8a951f9d7983Axel Kohlmeyer
fix typo 
Sep 27 2016
69a8842ecb81Axel Kohlmeyer
update load balance weights documentation for fix balance and balance 
Sep 27 2016
2af5c75f4269Axel Kohlmeyer
correct issue from merge 
Sep 27 2016
158599fca211Axel Kohlmeyer
Merge branch 'balance2' into weighted-balancing 
Sep 27 2016
c31b026797cfAxel Kohlmeyer
Merge branch 'integration' into weighted-balancing 
Sep 26 2016
47b52ed2ddf4Axel Kohlmeyer
Merge branch 'integration' into balance2 
Sep 26 2016
08f0bf90253eSteve Plimpton
new verion of balance weighting 
Sep 23 2016
40b68820d968Axel Kohlmeyer
update html docs to be used with latest version of converter tools 
Sep 14 2016
90e22a79097dAxel Kohlmeyer
Merge branch 'integration' into weighted-balancing 
Sep 14 2016
0f7873c0b8d2Axel Kohlmeyer
Merge branch 'integration' into weighted-balancing 
Sep 1 2016
eac721772089Axel Kohlmeyer
Merge remote-tracking branch 'lammps-rw/integration' into weighted-balancing 
Aug 31 2016
93401a83c6e0Axel Kohlmeyer
reintroduce pointer nullification for fix balance 
Aug 31 2016
82859c4e2573Axel Kohlmeyer
Merge branch 'integration' into weighted-balancing 
Aug 31 2016
10edfa297bbcAxel Kohlmeyer
Merge branch 'integration' into weighted-balancing 
Aug 31 2016
74b1caf2e651Axel Kohlmeyer
undo changes that belong to a different branch or are redundant 
Aug 22 2016
243137d5526cAxel Kohlmeyer
undo obsoleted changes to group command by iain bethune 
Aug 22 2016
40fd97bd4c92Axel Kohlmeyer
silence warnings about cases, that cannot happen 
Aug 22 2016
8492212c4bd5Axel Kohlmeyer
fix bug found by coverity scan 
Aug 22 2016
1976314f4041Axel Kohlmeyer
improve the weight assignment algorithm for compute time based balancing 
Aug 22 2016
17c1d3a9413cIain Bethune/Axel Kohlmeyer
Fix typo 
Aug 22 2016
fec59ee3b97aAxel Kohlmeyer
update documentation for refactored load-balancing 
Aug 22 2016
33a98d79fe6aAxel Kohlmeyer
remove upper limit for weigh factor on neighbor list and time weights 
Aug 22 2016
0902b600fb1bAxel Kohlmeyer
add new imbalance module store, which allows to store weights in an atom… 
Aug 22 2016
7f20afe122a5Axel Kohlmeyer
convert from using fix property/atom to using fix store 
Aug 22 2016
7e0dc7a74df1Axel Kohlmeyer
whitespace cleanup 
Aug 22 2016
b954283ec221Axel Kohlmeyer
properly handle the case of neighbor lists never been computed before 
Aug 22 2016
ecc136b6dc67Axel Kohlmeyer
plug small memory leak 
Aug 22 2016
4a536d71ebf8Axel Kohlmeyer
simplify and correct logic to pass weight to balancer algorithms 
Aug 22 2016
460bc1482235Axel Kohlmeyer
correct string hanlding with building custom property label 
Aug 22 2016
bb40f63a34b8Axel Kohlmeyer
we cannot add a fix while creating a fix. move fix addintion to Fix::init() 
Aug 22 2016
c6699e19e6a6Axel Kohlmeyer
rewrote balancing to use per-atom data stored via fix property/atom 
Aug 22 2016
257489116064Axel Kohlmeyer
fix optional argument scanning bug 
Aug 22 2016
332d6821ca43Axel Kohlmeyer
remove unused class member 
Aug 22 2016
b20108bddb03Axel Kohlmeyer
incorporate refactored weighting into fix balance 
Aug 22 2016
8d38db07c7d2Axel Kohlmeyer
convert weight array from class member to local pointer to temporary storage 
Aug 22 2016
4114bafc28aaAxel Kohlmeyer
proof-of-concept implementation for neighbor list based balancing with yet… 
Aug 22 2016
23a48916d796Axel Kohlmeyer
re-factored balance command now works with group and time weights 
Aug 22 2016
34b34d8410f7Axel Kohlmeyer
complete implementation for group based imbalance class 
Aug 22 2016
a5d38c0875dbAxel Kohlmeyer
prototype implementation for extensible imbalance scheme 
Aug 22 2016
eb273ab9ea3cAxel Kohlmeyer
fix elusive uninitialized data bug reported by valgrind 
Aug 22 2016
3cf6715d40fbAxel Kohlmeyer
be a bit more paranoid about initializing data structures 
Aug 22 2016
0b0db201d1c5Axel Kohlmeyer
make it so that dynamic load balancing only uses the timing since the last… 
Aug 22 2016
f76f2c881bd8Axel Kohlmeyer
minor tweaks and comment fixes 
Aug 22 2016
7d08d9991eb5Axel Kohlmeyer
improve c++-11 compliance. replace variable size stack allocation. 
Aug 22 2016
85cafde77c28Axel Kohlmeyer
whitespace cleanup 
Aug 22 2016
db734c3003cdAxel Kohlmeyer
disable debug output and include bond cost as well 
Aug 22 2016
cc77679851d7Axel Kohlmeyer
implement wall clock based load balancing cost function support 
Aug 22 2016
b8ae885de8a5Axel Kohlmeyer
update documentation according to the modified implementation based on iain… 
Aug 22 2016
66b4c9b8475dAxel Kohlmeyer
implement modified version of balance and fix balance according to steve's… 
Aug 22 2016