Diffusion lammps 5c985946d58f

Merge branch 'master' into USER-DPD_kokkos
5c985946d58f
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Authored by Stan Moore <stamoor@sandia.gov> on Aug 22 2017, 21:50.

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Merge branch 'master' into USER-DPD_kokkos

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Committed

Stan Moore <stamoor@sandia.gov>

Aug 22 2017, 21:50

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPS4041db8d1a74: Merge branch 'master' into USER-DPD_kokkos as of patch 10Aug17
rLAMMPSb11fe2eddb93: Merge pull request #573 from junghans/cmake

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Stan Moore <stamoor@sandia.gov> committed rLAMMPS5c985946d58f: Merge branch 'master' into USER-DPD_kokkos (authored by Stan Moore <stamoor@sandia.gov>).Aug 22 2017, 21:50

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
b11fe2eddb93	Steve Plimpton/GitHub	Merge pull request #573 from junghans/cmake	Aug 18 2017
7ddcb6812b44	Steve Plimpton	patch 17Aug17	Aug 18 2017
76cd61350d4c	Steve Plimpton/GitHub	Merge pull request #613 from akohlmey/collected-small-changes	Aug 17 2017
fa3c0c61d6a8	Steve Plimpton/GitHub	Merge pull request #618 from lammps/intel	Aug 17 2017
c46d5ff422c2	Steve Plimpton/GitHub	Merge pull request #612 from giacomofiorin/colvars-update-2017-08-10	Aug 17 2017
dd67989c7675	Steve Plimpton/GitHub	Merge pull request #601 from stanmoore1/kokkos_update	Aug 17 2017
00aafef1a851	Steve Plimpton/GitHub	Merge pull request #597 from ndtrung81/three-body-short-nlist	Aug 17 2017
7175abcc7170	Axel Kohlmeyer	flag more pair styles as supporting USER-INTEL to match newly added code	Aug 16 2017
e34b20405c28	Axel Kohlmeyer/GitHub	Fix a couple of typos in the docs	Aug 16 2017
1d4d2155a23b	Steve Plimpton	USER-INTEL add-ons from Mike	Aug 16 2017
cee87d7a54b5	Axel Kohlmeyer	update manual to point to packages.lammps.org instead of rpm.lammps.org	Aug 15 2017
60e14f14906c	Axel Kohlmeyer	add comment to msi2lmp README about symmetry limitations	Aug 14 2017
81e7d4a94259	Axel Kohlmeyer	fix incorrect preprocessor define for windows	Aug 12 2017
0b3f1b8a156d	Steve Plimpton	patch 11Aug17	Aug 11 2017
b209a4e246b5	Steve Plimpton/GitHub	Merge pull request #614 from akohlmey/fixes-for-stable	Aug 11 2017
27553283c30e	Axel Kohlmeyer	fix bug with pair_modify <style> compute not triggering the correct global…	Aug 11 2017
df56b2d6a43a	Axel Kohlmeyer	trigger relink after package library build through updating the time stamp on…	Aug 11 2017
c6d923b6c889	Axel Kohlmeyer	make download function more resilient by also catching failed execution	Aug 11 2017
6d24be8bb70f	Axel Kohlmeyer	whitespace cleanup	Aug 11 2017
8c16ea1bfca5	Axel Kohlmeyer	add automatic triggering of review requests with a code owners file	Aug 10 2017
c8741f3a01a2	Axel Kohlmeyer	remove special_bonds extra keyword and refer to read_data and create_box instead	Aug 10 2017
2a7d2dee3652	Axel Kohlmeyer	add more strict checking of data when parsing molecule files to detect format…	Aug 10 2017
da01be7c1857	Giacomo Fiorin	More robust change from initial to target restraint centers in Colvars	Aug 10 2017
3e9b41c6b74d	Trung Nguyen	Added references to GPU package citations	Aug 9 2017
8a7a831bd6c0	Stan Moore	Remove redundant check in Makefile.kokkos	Aug 8 2017
93190a548a4a	Richard Berger	Merge branch 'cmake' of github.com:junghans/lammps into cmake	Jul 31 2017
72f50c91ee01	Richard Berger	Add -DLAMMPS_EXCEPTIONS flag	Jul 31 2017
408d9d99a946	Christoph Junghans	cmake: improve some error messages	Jul 31 2017
8431ca5fecbc	Stan Moore	Remove tpls directory	Jul 31 2017
13f2d39f55b1	Stan Moore	Update Kokkos library to v2.03.13	Jul 31 2017
0231cc38a35e	Christoph Junghans	cmake: some more typo fixes	Jul 26 2017
6716de532073	Christoph Junghans	allow user to override PYTHON_INSTDIR	Jul 25 2017
f2023431f69b	Christoph Junghans	cmake: fixed another typo	Jul 24 2017
aa60ef6ed8cf	Trung Nguyen	Cleaned up 3-body kernels, reverted some mistaken changes to vashishta	Jul 23 2017
a71f5a0c20f7	Trung Nguyen	Enabled again neigh no with tpa > 1 for 3-body gpu styles for backward…	Jul 23 2017
126d9cd3bc71	Christoph Junghans	add GZIP and FFMPEG status	Jul 22 2017
74deeeca5855	Christoph Junghans	cmake: fixed another typo	Jul 21 2017
c010edc4fdc3	Christoph Junghans	cmake: fixed two typos	Jul 21 2017
3d1d0c58c732	Trung Nguyen	Cleaned up 3-body gpu styles, and fixed a bug for tersoff/zbl/gpu. There is a…	Jul 21 2017
e8e9ea839207	Christoph Junghans	added one trivial test	Jul 21 2017
c88d1e5510a1	Christoph Junghans	make ENABLE_ALL work out of the box	Jul 20 2017
427ca88dd44d	Christoph Junghans	cmake: error for POEMS + BODY package	Jul 20 2017
1749d643c720	Christoph Junghans	GPU: bring back CUDPP_OPT	Jul 20 2017
f037f89f5f4d	Christoph Junghans	fix GPU + BUILD_SHARED_LIBS	Jul 20 2017
488609a5fdfa	Christoph Junghans	make FFT a selective option	Jul 20 2017
01bcb79bdc0c	Christoph Junghans	cmake: clean up and updated comments	Jul 20 2017
babba1870efe	Christoph Junghans	added FFTW2 support	Jul 19 2017
a99e3ef4f0e8	Christoph Junghans	cmake: fix typo and pkg info	Jul 19 2017
c95db97b83c3	Christoph Junghans	fix PYTHON install	Jul 19 2017
2961ba7ebb0d	Christoph Junghans	added MKL support	Jul 19 2017

Changes (282)
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		Path
A		.github/CODEOWNERS
M		.gitignore
A	(dir)	cmake/
A		cmake/CMakeLists.txt
A	(dir)	cmake/Modules/
A		cmake/Modules/FindFFTW2.cmake
A		cmake/Modules/FindFFTW3.cmake
A		cmake/Modules/FindKIM.cmake
A		cmake/Modules/FindMKL.cmake
A		cmake/Modules/FindNetCDF.cmake
A		cmake/Modules/FindQE.cmake
A		cmake/Modules/FindQUIP.cmake
A		cmake/Modules/FindVORO.cmake
A		cmake/Modules/StyleHeaderUtils.cmake
A		cmake/README
A	(dir)	cmake/gpu/
A		cmake/gpu/lal_pppm_d.cu
A		cmake/gpu/lal_pppm_f.cu
M		doc/src/JPG/user_intel.png
M		doc/src/Manual.txt
M		doc/src/PDF/colvars-refman-lammps.pdf
M		doc/src/Section_commands.txt
M		doc/src/Section_errors.txt
M		doc/src/Section_start.txt
M		doc/src/accelerate_intel.txt
M		doc/src/fix_bond_create.txt
M		doc/src/pair_airebo.txt
M		doc/src/pair_charmm.txt
M		doc/src/pair_eam.txt
M		doc/src/special_bonds.txt
M		doc/src/tutorial_bash_on_windows.txt
M		doc/src/tutorial_drude.txt
M		doc/src/tutorials.txt
M		lib/colvars/Install.py
M		lib/colvars/README
M		lib/colvars/colvar.h
M		lib/colvars/colvaratoms.h
M		lib/colvars/colvarbias.cpp
M		lib/colvars/colvarbias.h
M		lib/colvars/colvarbias_restraint.cpp
M		lib/colvars/colvarbias_restraint.h
M		lib/colvars/colvarcomp.h
M		lib/colvars/colvardeps.cpp
M		lib/colvars/colvardeps.h
M		lib/colvars/colvars_version.h
M		lib/colvars/colvarscript.cpp
M		lib/colvars/colvartypes.cpp
M		lib/colvars/colvartypes.h
M		lib/colvars/colvarvalue.cpp
M		lib/colvars/colvarvalue.h
M		lib/gpu/Install.py
M		lib/gpu/lal_aux_fun1.h
M		lib/gpu/lal_base_three.cpp
M		lib/gpu/lal_base_three.h
M		lib/gpu/lal_sw.cpp
M		lib/gpu/lal_sw.cu
M		lib/gpu/lal_tersoff.cpp
M		lib/gpu/lal_tersoff.cu
M		lib/gpu/lal_tersoff.h
M		lib/gpu/lal_tersoff_mod.cpp
M		lib/gpu/lal_tersoff_mod.cu
M		lib/gpu/lal_tersoff_mod.h
M		lib/gpu/lal_tersoff_zbl.cpp
M		lib/gpu/lal_tersoff_zbl.cu
M		lib/gpu/lal_tersoff_zbl.h
M		lib/gpu/lal_vashishta.cpp
M		lib/gpu/lal_vashishta.cu
M		lib/gpu/lal_vashishta.h
M		lib/kim/Install.py
M		lib/kokkos/CHANGELOG.md
M		lib/kokkos/Makefile.kokkos
M		lib/kokkos/Makefile.targets
M		lib/kokkos/algorithms/unit_tests/TestOpenMP.cpp
M		lib/kokkos/algorithms/unit_tests/TestRandom.hpp
M		lib/kokkos/algorithms/unit_tests/UnitTestMain.cpp
M		lib/kokkos/benchmarks/bytes_and_flops/main.cpp
M		lib/kokkos/benchmarks/gather/main.cpp
A	(dir)	lib/kokkos/benchmarks/policy_performance/
P		lib/kokkos/benchmarks/policy_performance/Makefile Copied from lib/kokkos/example/tutorial/03_simple_view/Makefile
A		lib/kokkos/benchmarks/policy_performance/main.cpp
A		lib/kokkos/benchmarks/policy_performance/policy_perf_test.hpp
A		lib/kokkos/benchmarks/policy_performance/script_basic_testing.sh
A		lib/kokkos/benchmarks/policy_performance/script_sample_usage.sh
A		lib/kokkos/bin/hpcbind
A		lib/kokkos/bin/kokkos-bind
A		lib/kokkos/bin/runtest
M		lib/kokkos/cmake/kokkos.cmake
M		lib/kokkos/config/master_history.txt
A		lib/kokkos/config/query_cuda_arch.cpp
M		lib/kokkos/config/test_all_sandia
M		lib/kokkos/config/trilinos-integration/shepard_jenkins_run_script_pthread_intel
M		lib/kokkos/config/trilinos-integration/shepard_jenkins_run_script_serial_intel
M		lib/kokkos/containers/performance_tests/Makefile
M		lib/kokkos/containers/performance_tests/TestMain.cpp
M		lib/kokkos/containers/performance_tests/TestOpenMP.cpp
M		lib/kokkos/containers/src/Kokkos_DualView.hpp
M		lib/kokkos/containers/src/Kokkos_DynRankView.hpp
M		lib/kokkos/containers/src/Kokkos_DynamicView.hpp
M		lib/kokkos/containers/unit_tests/TestCuda.cpp
M		lib/kokkos/containers/unit_tests/TestOpenMP.cpp
M		lib/kokkos/containers/unit_tests/TestSerial.cpp
M		lib/kokkos/containers/unit_tests/TestThreads.cpp
A		lib/kokkos/containers/unit_tests/TestViewCtorPropEmbeddedDim.hpp
M		lib/kokkos/containers/unit_tests/UnitTestMain.cpp
M		lib/kokkos/core/perf_test/Makefile
M		lib/kokkos/core/perf_test/PerfTestMain.cpp
A		lib/kokkos/core/src/Cuda/KokkosExp_Cuda_IterateTile_Refactor.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_CudaExec.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_CudaSpace.cpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Impl.cpp
P		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Locks.cpp Copied from lib/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp
A		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Locks.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Parallel.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_ReduceScan.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.cpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Team.hpp
A		lib/kokkos/core/src/Cuda/Kokkos_Cuda_UniqueToken.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_View.hpp
P		lib/kokkos/core/src/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
M		lib/kokkos/core/src/KokkosExp_MDRangePolicy.hpp
M		lib/kokkos/core/src/Kokkos_Atomic.hpp
M		lib/kokkos/core/src/Kokkos_Concepts.hpp
M		lib/kokkos/core/src/Kokkos_Core.hpp
M		lib/kokkos/core/src/Kokkos_Core_fwd.hpp
A		lib/kokkos/core/src/Kokkos_Crs.hpp
M		lib/kokkos/core/src/Kokkos_Cuda.hpp
M		lib/kokkos/core/src/Kokkos_CudaSpace.hpp
M		lib/kokkos/core/src/Kokkos_ExecPolicy.hpp
M		lib/kokkos/core/src/Kokkos_HBWSpace.hpp
M		lib/kokkos/core/src/Kokkos_HostSpace.hpp
M		lib/kokkos/core/src/Kokkos_Layout.hpp
M		lib/kokkos/core/src/Kokkos_Macros.hpp
P		lib/kokkos/core/src/Kokkos_MasterLock.hpp Copied from lib/kokkos/core/unit_test/UnitTestMainInit.cpp
M		lib/kokkos/core/src/Kokkos_MemoryPool.hpp
M		lib/kokkos/core/src/Kokkos_MemoryTraits.hpp
M		lib/kokkos/core/src/Kokkos_OpenMP.hpp
M		lib/kokkos/core/src/Kokkos_Parallel.hpp
M		lib/kokkos/core/src/Kokkos_Parallel_Reduce.hpp
M		lib/kokkos/core/src/Kokkos_Serial.hpp
M		lib/kokkos/core/src/Kokkos_TaskScheduler.hpp
P		lib/kokkos/core/src/Kokkos_UniqueToken.hpp Copied from lib/kokkos/core/src/impl/Kokkos_spinwait.hpp
M		lib/kokkos/core/src/Kokkos_View.hpp
A		lib/kokkos/core/src/Kokkos_WorkGraphPolicy.hpp
M		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Exec.cpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Exec.hpp Copied to lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Team.hpp
M		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp
M		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.cpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp Copied to multiple locations: lib/kokkos/core/src/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp lib/kokkos/core/src/Threads/Kokkos_Threads_WorkGraphPolicy.hpp lib/kokkos/core/src/impl/Kokkos_Serial_WorkGraphPolicy.hpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Team.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Exec.hpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
M		lib/kokkos/core/src/OpenMPTarget/Kokkos_OpenMPTarget_Exec.hpp
M		lib/kokkos/core/src/Qthreads/Kokkos_QthreadsExec.hpp
M		lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.cpp
M		lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.hpp
M		lib/kokkos/core/src/Threads/Kokkos_ThreadsTeam.hpp
M		lib/kokkos/core/src/Threads/Kokkos_Threads_Parallel.hpp
P		lib/kokkos/core/src/Threads/Kokkos_Threads_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
M		lib/kokkos/core/src/impl/KokkosExp_Host_IterateTile.hpp
M		lib/kokkos/core/src/impl/Kokkos_AnalyzePolicy.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp
P		lib/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp Copied to lib/kokkos/core/src/Cuda/Kokkos_Cuda_Locks.cpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Exchange.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Add.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_And.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Or.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Sub.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Increment.hpp
M		lib/kokkos/core/src/impl/Kokkos_Core.cpp
M		lib/kokkos/core/src/impl/Kokkos_FunctorAdapter.hpp
M		lib/kokkos/core/src/impl/Kokkos_HBWSpace.cpp
M		lib/kokkos/core/src/impl/Kokkos_HostSpace.cpp
M		lib/kokkos/core/src/impl/Kokkos_HostThreadTeam.cpp
M		lib/kokkos/core/src/impl/Kokkos_HostThreadTeam.hpp
M		lib/kokkos/core/src/impl/Kokkos_Profiling_Interface.cpp
M		lib/kokkos/core/src/impl/Kokkos_Profiling_Interface.hpp
A		lib/kokkos/core/src/impl/Kokkos_Rendezvous.cpp
P		lib/kokkos/core/src/impl/Kokkos_Rendezvous.hpp Copied from lib/kokkos/core/src/impl/Kokkos_spinwait.hpp
M		lib/kokkos/core/src/impl/Kokkos_Serial.cpp
M		lib/kokkos/core/src/impl/Kokkos_Serial_Task.cpp
M		lib/kokkos/core/src/impl/Kokkos_Serial_Task.hpp
P		lib/kokkos/core/src/impl/Kokkos_Serial_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
M		lib/kokkos/core/src/impl/Kokkos_SharedAlloc.cpp
M		lib/kokkos/core/src/impl/Kokkos_SharedAlloc.hpp
A		lib/kokkos/core/src/impl/Kokkos_Spinwait.cpp
V		lib/kokkos/core/src/impl/{Kokkos_Spinwait.hpp ← Kokkos_spinwait.hpp}
M		lib/kokkos/core/src/impl/Kokkos_TaskQueue.hpp
M		lib/kokkos/core/src/impl/Kokkos_TaskQueue_impl.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewArray.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewCtor.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewMapping.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewTile.hpp
D		lib/kokkos/core/src/impl/Kokkos_spinwait.cpp
P		lib/kokkos/core/src/impl/Kokkos_spinwait.hpp Deleted after being copied to multiple locations: lib/kokkos/core/src/Kokkos_UniqueToken.hpp lib/kokkos/core/src/impl/Kokkos_Rendezvous.hpp lib/kokkos/core/src/impl/Kokkos_Spinwait.hpp
M		lib/kokkos/core/unit_test/CMakeLists.txt
M		lib/kokkos/core/unit_test/Makefile
M		lib/kokkos/core/unit_test/TestAggregate.hpp
M		lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit.hpp
M		lib/kokkos/core/unit_test/TestMDRange.hpp
M		lib/kokkos/core/unit_test/TestMemoryPool.hpp
M		lib/kokkos/core/unit_test/TestRange.hpp
A		lib/kokkos/core/unit_test/TestResize.hpp
M		lib/kokkos/core/unit_test/TestTaskScheduler.hpp
M		lib/kokkos/core/unit_test/TestTeamVector.hpp
M		lib/kokkos/core/unit_test/TestTile.hpp
A		lib/kokkos/core/unit_test/TestUniqueToken.hpp
A		lib/kokkos/core/unit_test/TestViewCtorPropEmbeddedDim.hpp
M		lib/kokkos/core/unit_test/TestViewMapping_a.hpp
M		lib/kokkos/core/unit_test/TestViewSubview.hpp
A		lib/kokkos/core/unit_test/TestWorkGraph.hpp
P		lib/kokkos/core/unit_test/UnitTestMain.cpp Copied to multiple locations: lib/kokkos/core/unit_test/cuda/TestCuda_UniqueToken.cpp lib/kokkos/core/unit_test/cuda/TestCuda_WorkGraph.cpp lib/kokkos/core/unit_test/openmp/TestOpenMP_UniqueToken.cpp lib/kokkos/core/unit_test/openmp/TestOpenMP_WorkGraph.cpp lib/kokkos/core/unit_test/serial/TestSerial_WorkGraph.cpp lib/kokkos/core/unit_test/threads/TestThreads_WorkGraph.cpp
P		lib/kokkos/core/unit_test/UnitTestMainInit.cpp Copied to multiple locations: lib/kokkos/core/src/Kokkos_MasterLock.hpp lib/kokkos/core/unit_test/default/TestDefaultDeviceTypeResize.cpp
M		lib/kokkos/core/unit_test/cuda/TestCuda_Other.cpp
P		lib/kokkos/core/unit_test/cuda/TestCuda_UniqueToken.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
P		lib/kokkos/core/unit_test/cuda/TestCuda_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
P		lib/kokkos/core/unit_test/default/TestDefaultDeviceTypeResize.cpp Copied from lib/kokkos/core/unit_test/UnitTestMainInit.cpp
M		lib/kokkos/core/unit_test/openmp/TestOpenMP.hpp
M		lib/kokkos/core/unit_test/openmp/TestOpenMP_Other.cpp
P		lib/kokkos/core/unit_test/openmp/TestOpenMP_UniqueToken.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
P		lib/kokkos/core/unit_test/openmp/TestOpenMP_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
M		lib/kokkos/core/unit_test/serial/TestSerial_Other.cpp
P		lib/kokkos/core/unit_test/serial/TestSerial_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
M		lib/kokkos/core/unit_test/threads/TestThreads_Other.cpp
P		lib/kokkos/core/unit_test/threads/TestThreads_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
M		lib/kokkos/example/cmake_build/CMakeLists.txt
M		lib/kokkos/example/feint/main.cpp
M		lib/kokkos/example/global_2_local_ids/G2L_Main.cpp
M		lib/kokkos/example/grow_array/main.cpp
P		lib/kokkos/example/tutorial/03_simple_view/Makefile Copied to multiple locations: lib/kokkos/benchmarks/policy_performance/Makefile lib/kokkos/example/tutorial/launch_bounds/Makefile
M		lib/kokkos/example/tutorial/Advanced_Views/Makefile
M		lib/kokkos/example/tutorial/Algorithms/Makefile
M		lib/kokkos/example/tutorial/Hierarchical_Parallelism/Makefile
M		lib/kokkos/example/tutorial/Makefile
A	(dir)	lib/kokkos/example/tutorial/launch_bounds/
A		lib/kokkos/example/tutorial/launch_bounds/CMakeLists.txt
P		lib/kokkos/example/tutorial/launch_bounds/Makefile Copied from lib/kokkos/example/tutorial/03_simple_view/Makefile
A		lib/kokkos/example/tutorial/launch_bounds/launch_bounds_reduce.cpp
M		lib/kokkos/generate_makefile.bash
M		lib/mscg/Install.py
M		lib/smd/Install.py
M		lib/voronoi/Install.py
M		src/GPU/fix_gpu.cpp
M		src/MAKE/OPTIONS/Makefile.intel_cpu_intelmpi
M		src/MAKE/OPTIONS/Makefile.intel_cpu_mpich
M		src/MAKE/OPTIONS/Makefile.intel_cpu_openmpi
M		src/Makefile
M		src/USER-COLVARS/colvarproxy_lammps_version.h
M		src/USER-INTEL/Install.sh
M		src/USER-INTEL/README
M		src/USER-INTEL/TEST/README
A		src/USER-INTEL/TEST/in.intel.airebo
M		src/USER-INTEL/TEST/in.intel.eam
M		src/USER-INTEL/TEST/in.intel.rhodo
M		src/USER-INTEL/intel_buffers.cpp
M		src/USER-INTEL/intel_buffers.h
A		src/USER-INTEL/intel_intrinsics_airebo.h
M		src/USER-INTEL/nbin_intel.cpp
A		src/USER-INTEL/npair_full_bin_ghost_intel.cpp
A		src/USER-INTEL/npair_full_bin_ghost_intel.h
M		src/USER-INTEL/npair_intel.cpp
A		src/USER-INTEL/pair_airebo_intel.cpp
A		src/USER-INTEL/pair_airebo_intel.h
A		src/USER-INTEL/pair_airebo_morse_intel.cpp
A		src/USER-INTEL/pair_airebo_morse_intel.h
A		src/USER-INTEL/pair_eam_alloy_intel.cpp
A		src/USER-INTEL/pair_eam_alloy_intel.h
A		src/USER-INTEL/pair_eam_fs_intel.cpp
A		src/USER-INTEL/pair_eam_fs_intel.h
M		src/USER-INTEL/pair_gayberne_intel.cpp
A		src/USER-INTEL/pair_lj_charmm_coul_charmm_intel.cpp
A		src/USER-INTEL/pair_lj_charmm_coul_charmm_intel.h
A		src/USER-INTEL/pair_rebo_intel.cpp
A		src/USER-INTEL/pair_rebo_intel.h
M		src/USER-INTEL/pair_sw_intel.cpp
M		src/force.cpp
M		src/info.cpp
M		src/input.cpp
M		src/molecule.cpp
M		src/pair.cpp
M		src/pair_hybrid.cpp
M		src/version.h
M		tools/msi2lmp/README