Diffusion lammps 743508437575

Verified oxDNA with modified nucleotide layout
743508437575
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Authored by Oliver Henrich <o.henrich@epcc.ed.ac.uk> on Mar 22 2017, 16:59.

Description

Verified oxDNA with modified nucleotide layout

Details

Committed

Oliver Henrich <o.henrich@epcc.ed.ac.uk>

Mar 22 2017, 16:59

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPS7a75cd111c3d: Minor updates in documentation and setup tool, merge before upgrade to oxDNA2

Branches

Unknown

Tags

Unknown

Event Timeline

Oliver Henrich <o.henrich@epcc.ed.ac.uk> committed rLAMMPS743508437575: Verified oxDNA with modified nucleotide layout (authored by Oliver Henrich <o.henrich@epcc.ed.ac.uk>).Mar 22 2017, 16:59

Changes (41)

		Path
M		doc/src/PDF/USER-CGDNA-overview.pdf
D		examples/USER/cgdna/examples/duplex1
D		examples/USER/cgdna/examples/duplex1/data.duplex1
V		examples/USER/cgdna/examples/{ → oxDNA}/duplex1/input.duplex1
D		examples/USER/cgdna/examples/duplex1/log.9Jan17.duplex1.g++.1
D		examples/USER/cgdna/examples/duplex1/log.9Jan17.duplex1.g++.4
D		examples/USER/cgdna/examples/duplex2
D		examples/USER/cgdna/examples/duplex2/data.duplex2
V		examples/USER/cgdna/examples/{ → oxDNA}/duplex2/input.duplex2
D		examples/USER/cgdna/examples/duplex2/log.9Jan17.duplex2.g++.1
D		examples/USER/cgdna/examples/duplex2/log.9Jan17.duplex2.g++.4
A	(dir)	examples/USER/cgdna/examples/oxDNA/
A	(dir)	examples/USER/cgdna/examples/oxDNA/duplex1/
A		examples/USER/cgdna/examples/oxDNA/duplex1/data.duplex1
V		examples/USER/cgdna/examples/{oxDNA ← }/duplex1/input.duplex1
A		examples/USER/cgdna/examples/oxDNA/duplex1/log.17Mar17.duplex1.g++.1
A		examples/USER/cgdna/examples/oxDNA/duplex1/log.17Mar17.duplex1.g++.4
A	(dir)	examples/USER/cgdna/examples/oxDNA/duplex2/
A		examples/USER/cgdna/examples/oxDNA/duplex2/data.duplex2
V		examples/USER/cgdna/examples/{oxDNA ← }/duplex2/input.duplex2
A		examples/USER/cgdna/examples/oxDNA/duplex2/log.17Mar17.duplex2.g++.1
A		examples/USER/cgdna/examples/oxDNA/duplex2/log.17Mar17.duplex2.g++.4
P		src/USER-CGDNA/bond_oxdna2_fene.cpp Copied from src/compute_com.cpp
P		src/USER-CGDNA/bond_oxdna2_fene.h Copied from src/USER-CGDNA/bond_oxdna_fene.h
M		src/USER-CGDNA/bond_oxdna_fene.cpp
P		src/USER-CGDNA/bond_oxdna_fene.h Copied to src/USER-CGDNA/bond_oxdna2_fene.h
M		src/USER-CGDNA/mf_oxdna.h
P		src/USER-CGDNA/pair_oxdna2_coaxstk.cpp Copied from src/USER-CGDNA/pair_oxdna_coaxstk.cpp
P		src/USER-CGDNA/pair_oxdna2_coaxstk.h Copied from src/USER-CGDNA/pair_oxdna_coaxstk.h
P		src/USER-CGDNA/pair_oxdna2_excv.cpp Copied from src/reader.cpp
P		src/USER-CGDNA/pair_oxdna2_excv.h Copied from src/USER-INTEL/fix_nve_intel.h
P		src/USER-CGDNA/pair_oxdna_coaxstk.cpp Copied to src/USER-CGDNA/pair_oxdna2_coaxstk.cpp
P		src/USER-CGDNA/pair_oxdna_coaxstk.h Copied to src/USER-CGDNA/pair_oxdna2_coaxstk.h
M		src/USER-CGDNA/pair_oxdna_excv.cpp
M		src/USER-CGDNA/pair_oxdna_excv.h
M		src/USER-CGDNA/pair_oxdna_hbond.cpp
M		src/USER-CGDNA/pair_oxdna_hbond.h
M		src/USER-CGDNA/pair_oxdna_stk.cpp
M		src/USER-CGDNA/pair_oxdna_stk.h
M		src/USER-CGDNA/pair_oxdna_xstk.cpp
M		src/USER-CGDNA/pair_oxdna_xstk.h