compiling and linking with DD (not test)
1e97b3b33259
Actions

Authored by anciaux on Nov 2 2017, 13:06.

Description

compiling and linking with DD (not test)

Details

Committed

anciaux

Nov 2 2017, 13:06

Pushed

anciaux

Sep 20 2018, 14:49

Parents

rLIBMULTISCALE8b08b775106e: compiling state including with paradis

Branches

Unknown

Tags

Unknown

Event Timeline

anciaux committed rLIBMULTISCALE1e97b3b33259: compiling and linking with DD (not test) (authored by anciaux).Nov 2 2017, 13:06

Changes (337)
Show All Changes

Very Large Commit

This commit is very large. Load each file individually.

				Path
	M			packages/lammps_plugin.cmake
	M			src/common/action_interface.cc
	M			src/common/action_interface.hh
	M			src/common/component_libmultiscale.hh
	M			src/common/container_mesh.hh
	M			src/common/domain_interface.cc
	M			src/common/domain_interface.hh
	M			src/common/lm_common.hh
	M			src/common/lm_file.cc
	M			src/common/lm_file.hh
	M			src/common/lm_functions.cc
	M			src/common/lm_functions.hh
	M			src/common/lm_fwd.hh
	M			src/common/lm_globals.cc
	M			src/common/lm_globals.hh
	M			src/common/lm_libc.cc
	M			src/common/lm_log.cc
	M			src/common/lm_log.hh
	M			src/common/lm_macros.hh
	M			src/common/lm_timer.cc
	M			src/common/lm_timer.hh
	M			src/common/lm_types.hh
	M			src/common/model_list.hh
	M			src/common/ref_point.hh
	M			src/common/ref_point_data.hh
	M			src/common/ref_set.cc
	M			src/common/ref_set.hh
	M			src/common/ref_subset.cc
	M			src/common/ref_subset.hh
	M			src/common/reference_manager.cc
	M			src/common/reference_manager.hh
	M			src/common/reference_manager_interface.hh
	M			src/common/visitor_libmultiscale.hh
	M			src/communicator/comm_buffer.hh
	M			src/communicator/communicator.cc
	M			src/communicator/communicator.hh
	M			src/communicator/communicator_distributed.hh
	M			src/communicator/communicator_unity.hh
	M			src/communicator/communicator_world.hh
	M			src/communicator/pack_buffer.hh
	M			src/container/iterator_array.hh
	M			src/container/iterator_array_base_type.hh
	M			src/continuum/1d/domain_meca1d.cc
	M			src/continuum/1d/domain_meca1d.hh
	M			src/continuum/1d/iterator_meca1d.hh
	M			src/continuum/1d/mesh_meca1d.cc
	M			src/continuum/1d/mesh_meca1d.hh
	M			src/continuum/1d/ref_elem_meca1d.hh
	M			src/continuum/1d/ref_node_meca1d.hh
	M			src/continuum/akantu/akantu_dof_wrapper.cc
	M			src/continuum/akantu/akantu_dof_wrapper.hh
	M			src/continuum/akantu/container_akantu.cc
	M			src/continuum/akantu/container_akantu.hh
	M			src/continuum/akantu/domain_akantu.cc
	M			src/continuum/akantu/domain_akantu.hh
	M			src/continuum/akantu/domain_akantu_compound.cc
	M			src/continuum/akantu/domain_akantu_compound.hh
	M			src/continuum/akantu/domain_akantu_dynamic.cc
	M			src/continuum/akantu/domain_akantu_dynamic.hh
	M			src/continuum/akantu/domain_akantu_static.cc
	M			src/continuum/akantu/domain_akantu_static.hh
	M			src/continuum/akantu/iterator_akantu.cc
	M			src/continuum/akantu/iterator_akantu.hh
	M			src/continuum/akantu/ref_elem_akantu.cc
	M			src/continuum/akantu/ref_elem_akantu.hh
	M			src/continuum/akantu/ref_node_akantu.cc
	M			src/continuum/akantu/ref_node_akantu.hh
	M			src/continuum/akantu/vec_akantu.hh
	M			src/continuum/domain_continuum.cc
	M			src/continuum/domain_continuum.hh
	M			src/continuum/domain_continuum_interface.cc
	M			src/continuum/domain_continuum_interface.hh
	M			src/continuum/ref_element.hh
	M			src/coupling/arlequin_template.cc
	M			src/coupling/arlequin_template.hh
	M			src/coupling/bridging.cc
	M			src/coupling/bridging.hh
	M			src/coupling/bridging_atomic_continuum.cc
	M			src/coupling/bridging_par.hh
	M			src/coupling/coupler_manager.cc
	M			src/coupling/coupler_manager.hh
	M			src/coupling/coupling.hh
	M			src/coupling/coupling_atomic_continuum.hh
	M			src/coupling/coupling_dd_continuum.hh
	M			src/coupling/coupling_dd_md.hh
	M			src/coupling/coupling_interface.hh
	M			src/coupling/dof_association.cc
	M			src/coupling/dof_association.hh
	M			src/coupling/duo_distributed_vector.cc
	M			src/coupling/duo_distributed_vector.hh
	M			src/coupling/kobayashi.cc
	M			src/coupling/kobayashi.hh
	M			src/coupling/lib_bridging.hh
	M			src/coupling/shape_matrix.hh
	M			src/coupling/xiao.cc
	M			src/coupling/xiao.hh
	M			src/dd/container_dd.hh
	M			src/dd/domain_dd.cc
	M			src/dd/domain_dd_interface.cc
	M			src/dd/paradis/container_paradis.hh
	M			src/dd/paradis/domain_paradis.cc
	M			src/dd/paradis/iterator_paradis.hh
	M			src/dd/paradis/ref_node_paradis.hh
	M			src/dd/ref_node_dd.hh
	M			src/dumper/base64_reader.hh
	M			src/dumper/base64_writer.hh
	M			src/dumper/dumper.cc
	M			src/dumper/dumper.hh
	M			src/dumper/dumper_1d.cc
	M			src/dumper/dumper_1d.hh
	M			src/dumper/dumper_blackdynamite.cc
	M			src/dumper/dumper_blackdynamite.hh
	M			src/dumper/dumper_ekin.cc
	M			src/dumper/dumper_ekin.hh
	M			src/dumper/dumper_epot.cc
	M			src/dumper/dumper_epot.hh
	M			src/dumper/dumper_grid.cc
	M			src/dumper/dumper_interface.hh
	M			src/dumper/dumper_lammps.cc
	M			src/dumper/dumper_lammps.hh
	M			src/dumper/dumper_paraview.cc
	M			src/dumper/dumper_paraview.hh
	M			src/dumper/dumper_paraview_atom.cc
	M			src/dumper/dumper_paraview_mesh.cc
	M			src/dumper/dumper_restart.cc
	M			src/dumper/dumper_restart.hh
	M			src/dumper/dumper_text.cc
	M			src/dumper/dumper_text.hh
	M			src/dumper/paraview_helper.hh
	M			src/factory/action_manager.cc
	M			src/factory/action_manager.hh
	M			src/factory/domain_multiscale.cc
	M			src/factory/domain_multiscale.hh
	M			src/factory/factory_multiscale.cc
	M			src/factory/factory_multiscale.hh
	M			src/factory/factory_multiscale_inline_impl.hh
	M			src/factory/filter_manager.cc
	M			src/factory/filter_manager.hh
	M			src/filter/accept_compute_include.hh
	M			src/filter/accept_filter_include.hh
	M			src/filter/accept_real_compute.hh
	M			src/filter/accept_ref_compute.hh
	M			src/filter/accept_ref_filter.hh
	M			src/filter/compute.cc
	M			src/filter/compute.hh
	M			src/filter/compute_add_ddloop.cc
	M			src/filter/compute_add_ddloop.hh
	M			src/filter/compute_addpoints.cc
	M			src/filter/compute_addpoints.hh
	M			src/filter/compute_centro_symmetry.cc
	M			src/filter/compute_centro_symmetry.hh
	M			src/filter/compute_combine.cc
	M			src/filter/compute_combine.hh
	M			src/filter/compute_compatibility.hh
	M			src/filter/compute_concat.cc
	M			src/filter/compute_concat.hh
	M			src/filter/compute_ekin.cc
	M			src/filter/compute_ekin.hh
	M			src/filter/compute_ekin_mesh.cc
	M			src/filter/compute_ekin_point.cc
	M			src/filter/compute_energydensity.cc
	M			src/filter/compute_energydensity.hh
	M			src/filter/compute_epot.cc
	M			src/filter/compute_epot.hh
	M			src/filter/compute_epot_mesh.cc
	M			src/filter/compute_epot_point.cc
	M			src/filter/compute_extract.cc
	M			src/filter/compute_extract.hh
	M			src/filter/compute_extract_mesh.cc
	M			src/filter/compute_extract_point.cc
	M			src/filter/compute_impulse.cc
	M			src/filter/compute_impulse.hh
	M			src/filter/compute_interface.hh
	M			src/filter/compute_mesh.cc
	M			src/filter/compute_mesh.hh
	M			src/filter/compute_periodic_position.cc
	M			src/filter/compute_periodic_position.hh
	M			src/filter/compute_point_set.cc
	M			src/filter/compute_python.cc
	M			src/filter/compute_python.hh
	M			src/filter/compute_reduce.cc
	M			src/filter/compute_reduce.hh
	M			src/filter/compute_time_average.cc
	M			src/filter/compute_time_average.hh
	M			src/filter/compute_time_delta.cc
	M			src/filter/compute_time_delta.hh
	M			src/filter/compute_true_displacement.cc
	M			src/filter/compute_true_displacement.hh
	M			src/filter/filter.cc
	M			src/filter/filter_compatibility.hh
	M			src/filter/filter_dislo.hh
	M			src/filter/filter_geometry.cc
	M			src/filter/filter_geometry_points.cc
	M			src/filter/filter_threshold.hh
	M			src/filter/null_compute.hh
	M			src/fmm/fmm.hh
	M			src/fmm/fmm_interface.hh
	M			src/fmm/fmm_multigrid.hh
	M			src/fmm/moments.hh
	M			src/fmm/radial_function.hh
	M			src/geometry/ball.cc
	M			src/geometry/ball.hh
	M			src/geometry/chaudron.hh
	M			src/geometry/cube.cc
	M			src/geometry/cube.hh
	M			src/geometry/cube_surface.cc
	M			src/geometry/cube_surface.hh
	M			src/geometry/cylinder.cc
	M			src/geometry/cylinder.hh
	M			src/geometry/ellipsoid.hh
	M			src/geometry/geom_composed.cc
	M			src/geometry/geom_composed.hh
	M			src/geometry/geom_inter.cc
	M			src/geometry/geom_inter.hh
	M			src/geometry/geom_sub.cc
	M			src/geometry/geom_sub.hh
	M			src/geometry/geom_union.cc
	M			src/geometry/geom_union.hh
	M			src/geometry/geometry.cc
	M			src/geometry/geometry.hh
	M			src/geometry/geometry_manager.cc
	M			src/geometry/geometry_manager.hh
	M			src/geometry/spatial_grid.cc
	M			src/geometry/spatial_grid.hh
	M			src/geometry/spatial_grid_libmultiscale.hh
	M			src/geometry/surface.cc
	M			src/geometry/surface.hh
	M			src/math/array.cc
	M			src/math/array.hh
	M			src/math/band_matrix.hh
	M			src/math/constant_function.hh
	M			src/math/cubic_spline.hh
	M			src/math/diag_matrix.hh
	M			src/math/dispersion_relation.hh
	M			src/math/full_matrix.hh
	M			src/math/full_matrix_inline_impl.hh
	M			src/math/function_interface.hh
	M			src/math/gaussian_function.hh
	M			src/math/hamming_window.hh
	M			src/math/hanning_window.hh
	M			src/math/low_pass_filter.hh
	M			src/math/math_tools.cc
	M			src/math/math_tools.hh
	M			src/math/matrix.hh
	M			src/math/product_function.hh
	M			src/math/spline_function.hh
	M			src/math/tensor.hh
	M			src/md/1d/container_md1d.hh
	M			src/md/1d/domain_md1d.cc
	M			src/md/1d/domain_md1d.hh
	M			src/md/1d/iterator_md1d.hh
	M			src/md/1d/md_builder.cc
	M			src/md/1d/md_builder.hh
	M			src/md/1d/ref_atom_md1d.hh
	M			src/md/1d/reference_manager_md1d.hh
	M			src/md/container_neighbor_atoms_interface.hh
	M			src/md/domain_md.cc
	M			src/md/domain_md_interface.cc
	M			src/md/domain_md_interface.hh
	M			src/md/lammps/compute_lammps.cc
	M			src/md/lammps/compute_lammps.hh
	M			src/md/lammps/container_lammps.hh
	M			src/md/lammps/domain_lammps.cc
	M			src/md/lammps/domain_lammps.hh
	M			src/md/lammps/domain_lammps_compound.cc
	M			src/md/lammps/domain_lammps_compound.hh
	M			src/md/lammps/domain_lammps_dynamic.cc
	M			src/md/lammps/domain_lammps_dynamic.hh
	M			src/md/lammps/domain_lammps_minimize.cc
	M			src/md/lammps/domain_lammps_minimize.hh
	M			src/md/lammps/epot_hook.cc
	M			src/md/lammps/epot_hook.hh
	M			src/md/lammps/import_lammps.cc
	M			src/md/lammps/import_lammps.hh
	D			src/md/lammps/iterator_lammps.cc
	M			src/md/lammps/iterator_lammps.hh
	M			src/md/lammps/lammps_common.hh
	M			src/md/lammps/reference_manager_lammps.cc
	M			src/md/lammps/reference_manager_lammps.hh
	M			src/md/lammps/stress_hook.cc
	M			src/md/lammps/stress_hook.hh
	M			src/md/spatial_filter_atomic.cc
	M			src/md/spatial_filter_atomic.hh
	M			src/md/trace_atom.cc
	M			src/md/trace_atom.hh
	M			src/parser/algebraic_parser.cc
	M			src/parser/algebraic_parser.hh
	M			src/parser/lm_defaults.hh
	M			src/parser/lm_parameter.hh
	M			src/parser/lm_parsable.cc
	M			src/parser/lm_parsable.hh
	M			src/parser/lm_parsable_inline_impl.hh
	M			src/parser/lm_parser.cc
	M			src/parser/lm_parser.hh
	M			src/parser/lm_parser_inline_impl.hh
	M			src/parser/xml_parser.hh
	M			src/parser/xml_parser_restart.hh
	M			src/stimulation/accept_real_stimulation.hh
	M			src/stimulation/accept_ref_stimulation.hh
	M			src/stimulation/accept_stimulation_include.hh
	M			src/stimulation/stimulation.cc
	M			src/stimulation/stimulation_addforce.cc
	M			src/stimulation/stimulation_addforce.hh
	M			src/stimulation/stimulation_berendsen.cc
	M			src/stimulation/stimulation_berendsen.hh
	M			src/stimulation/stimulation_block.cc
	M			src/stimulation/stimulation_block.hh
	M			src/stimulation/stimulation_dislo.cc
	M			src/stimulation/stimulation_field.cc
	M			src/stimulation/stimulation_field.hh
	M			src/stimulation/stimulation_field_mesh.cc
	M			src/stimulation/stimulation_field_point.cc
	M			src/stimulation/stimulation_global_timestep.cc
	M			src/stimulation/stimulation_global_timestep.hh
	M			src/stimulation/stimulation_impulse.cc
	M			src/stimulation/stimulation_impulse.hh
	M			src/stimulation/stimulation_interface.hh
	M			src/stimulation/stimulation_langevin.cc
	M			src/stimulation/stimulation_langevin.hh
	M			src/stimulation/stimulation_linearmomentum.cc
	M			src/stimulation/stimulation_linearmomentum.hh
	M			src/stimulation/stimulation_next_event.cc
	M			src/stimulation/stimulation_next_event.hh
	M			src/stimulation/stimulation_raz.cc
	M			src/stimulation/stimulation_raz.hh
	M			src/stimulation/stimulation_rigidify.cc
	M			src/stimulation/stimulation_rigidify.hh
	M			src/stimulation/stimulation_temperature.cc
	M			src/stimulation/stimulation_temperature.hh
	M			src/stimulation/stimulation_temperature_mesh.cc
	M			src/stimulation/stimulation_temperature_point.cc
	M			src/stimulation/stimulation_veluni.cc
	M			src/stimulation/stimulation_veluni.hh
	M			src/units/quantity.hh
	M			src/units/units.cc
	M			src/units/units_converter.cc
	M			src/units/units_converter.hh