Features/documentation
4cae61e7a003
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Authored by voisinleprince on Apr 23 2021, 07:36.

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Features/documentation

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anciaux

Apr 23 2021, 07:36

Pushed

anciaux

Jul 19 2021, 12:29

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rLIBMULTISCALE61051604027f: fix compilation problem

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anciaux committed rLIBMULTISCALE4cae61e7a003: Features/documentation (authored by voisinleprince).Apr 23 2021, 07:36

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		Path
M		.gitignore
M		.gitlab-ci.yml
M		.gitmodules
M		CMakeLists.txt
P		clients/AMEL-sphere.py Copied from clients/AMEL.py
M		clients/AMEL.cc
P		clients/AMEL.py Copied to clients/AMEL-sphere.py
M		cmake/LibMultiScaleMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
M		cmake/Modules/FindGMSH.cmake
A		cmake/Modules/FindInkscape.cmake
M		cmake/Modules/FindMumps.cmake
M		cmake/Modules/FindPETSc.cmake
A		cmake/Modules/FindPythonLibsNew.cmake
A		cmake/Modules/FindSphinx.cmake
M		doc/keywords/chapters.tex
M		doc/source/Conffile.rst
A		doc/source/development.rst
M		doc/source/index.rst
M		dockerfiles/debian:bullseye/Dockerfile
A	(dir)	dockerfiles/manylinux/
A	(dir)	dockerfiles/manylinux-lm/
A		dockerfiles/manylinux-lm/Dockerfile
A		dockerfiles/manylinux-lm/repos.yaml
A		dockerfiles/manylinux/Dockerfile
A		dockerfiles/manylinux/packages.yaml
A		dockerfiles/manylinux/spack.yaml
M		dockerfiles/ubuntu:19.10/Dockerfile
M		dockerfiles/ubuntu:20.04/Dockerfile
M		examples/atc_xiao_Al/lm.config
M		examples/atc_xiao_Al/material.dat
M		examples/atc_xiao_lj/lm.config
D		extra_packages
D		extra_packages/thermalcoupling
P		packages/akantu.cmake Copied from packages/akantu_iterators.cmake
P		packages/akantu_iterators.cmake Copied to multiple locations: packages/akantu.cmake packages/eigen.cmake packages/lammps.cmake
M		packages/core.cmake
P		packages/eigen.cmake Copied from packages/akantu_iterators.cmake
P		packages/lammps.cmake Copied from packages/akantu_iterators.cmake
M		packages/pybind11.cmake
M		python/keyword_list.cc
M		src/common/lm_log.hh
M		src/common/lm_ostream_types.hh
M		src/common/lm_python_couplers.hh
M		src/common/lm_python_domains.hh
M		src/common/lm_python_types.hh
M		src/common/lm_type_caster.hh
M		src/common/lm_types.hh
M		src/common/possible_types.hh
M		src/continuum/1d/domain_meca1d.cc
M		src/continuum/akantu/akantu_dof_wrapper.cc
M		src/continuum/akantu/akantu_dof_wrapper.hh
M		src/continuum/akantu/container_akantu.cc
M		src/continuum/akantu/container_akantu.hh
M		src/continuum/akantu/domain_akantu.cc
M		src/continuum/akantu/domain_akantu.hh
M		src/continuum/akantu/iterator_akantu.cc
M		src/continuum/akantu/ref_elem_akantu.cc
M		src/continuum/akantu/ref_elem_akantu.hh
M		src/continuum/akantu/ref_node_akantu.cc
M		src/continuum/domain_continuum.cc
M		src/coupling/arlequin_template.cc
M		src/dd/paradis/domain_paradis.cc
M		src/dumper/dumper_interface.cc
M		src/dumper/dumper_paraview.cc
M		src/dumper/dumper_paraview.hh
M		src/dumper/dumper_restart.cc
M		src/dumper/dumper_restart.hh
M		src/filter/compute_arlequin_weight.cc
M		src/filter/compute_ekin.cc
M		src/filter/compute_extract.cc
M		src/filter/compute_periodic_position.cc
M		src/filter/compute_python.cc
M		src/filter/compute_python.hh
M		src/filter/filter_geometry.cc
M		src/geometry/cube.cc
M		src/geometry/cube.hh
M		src/geometry/spatial_grid.hh
M		src/md/1d/domain_md1d.cc
M		src/md/1d/ref_atom_md1d.hh
M		src/md/domain_md.cc
M		src/md/lammps/container_lammps.hh
M		src/md/lammps/domain_lammps.cc
M		src/md/lammps/domain_lammps.hh
M		src/md/lammps/import_lammps.cc
M		src/md/lammps/iterator_lammps.hh
M		src/md/lammps/ref_atom_lammps.hh
M		src/md/lammps/stress_hook.cc
M		src/md/lammps/stress_hook.hh
M		src/md/ref_atom.hh
A		src/parser/lm_parameter.cc
M		src/parser/lm_parameter.hh
M		src/parser/lm_parser.cc
M		src/parser/lm_parser_inline_impl.hh
M		src/parser/xml_parser_restart.hh
M		src/stimulation/stimulation_addforce.cc
M		src/stimulation/stimulation_addforce.hh
M		src/stimulation/stimulation_block.cc
M		src/stimulation/stimulation_dislo.cc
M		src/stimulation/stimulation_impulse.cc
M		src/stimulation/stimulation_langevin.cc
M		src/stimulation/stimulation_next_event.hh
M		src/stimulation/stimulation_rigidify.cc
M		src/stimulation/stimulation_temperature.cc
M		src/stimulation/stimulation_veluni.cc
M		src/stimulation/stimulation_zero.cc
M		src/stimulation/stimulation_zero.hh
M		src/units/quantity.hh
M		src/units/units.cc
M		src/units/units.hh
A	(dir)	test/codeclimate/
A	(dir)	test/codeclimate/codeclimate-clang-tidy/
A		test/codeclimate/codeclimate-clang-tidy/Dockerfile
A	(dir)	test/codeclimate/codeclimate-clang-tidy/bin/
A		test/codeclimate/codeclimate-clang-tidy/bin/codeclimate-clang-tidy
A		test/codeclimate/codeclimate-clang-tidy/bin/run-clang-tidy
A		test/codeclimate/codeclimate-clang-tidy/engine.json
A	(dir)	test/codeclimate/codeclimate-clang-tidy/lib/
A		test/codeclimate/codeclimate-clang-tidy/lib/command.py
A		test/codeclimate/codeclimate-clang-tidy/lib/issue_formatter.py
A		test/codeclimate/codeclimate-clang-tidy/lib/runner.py
A		test/codeclimate/codeclimate-clang-tidy/lib/workspace.py
M		test/coupling/LAMMPS_AKANTU/test_2D_EnergyConservation/geometries.config
M		test/coupling/LAMMPS_AKANTU/test_2D_EnergyConservation/test_2D_EnergyConservation.config
M		test/coupling/LAMMPS_AKANTU/test_2D_FilteringDamping/test.config
M		test/coupling/LAMMPS_AKANTU/test_HybridDislo2/test_HybridDislo2.config
M		test/coupling/LAMMPS_AKANTU/test_LeastSquare/geometries.config
M		test/coupling/LAMMPS_AKANTU/test_LeastSquare/test_LeastSquare.config
M		test/coupling/LAMMPS_AKANTU/test_ThermalDampingRestitution/geometries.config
M		test/coupling/LAMMPS_AKANTU/test_ThermalDampingRestitution/test_ThermalDampingRestitution.config
M		test/coupling/LAMMPS_AKANTU/test_Xiao/test.config
M		test/coupling/LAMMPS_AKANTU/test_Xiao/test_Xiao.config
M		test/coupling/LAMMPS_AKANTU/test_Xiao/test_Xiao.pconfig
M		test/coupling/LAMMPS_AKANTU/test_point_association/test_point_association.config
M		test/coupling/LAMMPS_AKANTU/test_quasi_continuum/test_quasi_continuum.config
M		test/coupling/LAMMPS_AKANTU/test_quasi_continuum2/test_quasi_continuum2.config
M		test/coupling/LAMMPS_AKANTU/test_quasi_continuum_patch/test_quasi_continuum_patch.config
M		test/coupling/MD1D_AKANTU/test_Xiao/test_Xiao.config
M		test/coupling/MD1D_MECA1D/test_EnergyConservation/geometries.config
M		test/coupling/MD1D_MECA1D/test_EnergyConservation/test_EnergyConservation.config
M		test/coupling/MD1D_MECA1D/test_Kobayashi/test_Kobayashi.config
M		test/coupling/MD1D_MECA1D/test_LeastSquareAtFiniteTemperature/geometries.config
M		test/coupling/MD1D_MECA1D/test_LeastSquareAtFiniteTemperature/test_LeastSquareAtFiniteTemperature.config
M		test/coupling/MD1D_MECA1D/test_Xiao/test_Xiao.config
M		test/coupling/MD1D_MECA1D/test_quasi_continuum_stability/mesh/cadd1d.py
M		test/coupling/MD1D_MECA1D/test_quasi_continuum_stability/test_quasi_continuum_stability.config
M		test/migration/coupled-crystal.config
M		test/migration/dense-crystal.config
M		test/python/.gitignore
M		test/python/test_akantu.py
M		test/python/test_bridging.py
M		test/single_scale/AKANTU/test_1D_Energy/test_1D_Energy.config
M		test/single_scale/AKANTU/test_1D_KineticEnergy/test_1D_KineticEnergy.config
M		test/single_scale/AKANTU/test_1D_heat_pulse/test_1D_heat_pulse.config
M		test/single_scale/AKANTU/test_1D_temperature_gradient/test_1D_temperature_gradient.config
M		test/single_scale/AKANTU/test_2D_Impulse_Al-111-LJ/test_2D_Impulse_Al-111-LJ.config
M		test/single_scale/AKANTU/test_2D_KineticEnergy/test_2D_KineticEnergy.config
M		test/single_scale/AKANTU/test_2D_heat_pulse/test_2D_heat_pulse.config
M		test/single_scale/AKANTU/test_2D_heat_pulse_flux_boundary/test_2D_heat_pulse_flux_boundary.config
M		test/single_scale/AKANTU/test_pbc_aluminum/test_pbc_aluminum.config
M		test/single_scale/AKANTU/test_pbc_isotropic/test_pbc_isotropic.config
M		test/single_scale/AKANTU/test_pbc_with_neumann/test_pbc_with_neumann.config
M		test/single_scale/LAMMPS/test_2D_Langevin_thermostat/test_2D_Langevin_thermostat.config
M		test/single_scale/LAMMPS/test_2D_RESTART/test_2D_DumperRestart.config
M		test/single_scale/LAMMPS/test_2D_RESTART/test_2D_RestartFile.config
M		test/single_scale/LAMMPS/test_FMM/test_FMM.config
M		test/single_scale/LAMMPS/test_GEOMETRY/test_GEOMETRY.config
M		test/single_scale/LAMMPS/test_IMPULSE/test_IMPULSE.config
M		test/single_scale/LAMMPS/test_Langevin_thermostat/test_Langevin_thermostat.config
M		test/single_scale/LAMMPS/test_Langevin_thermostat/test_Langevin_thermostat.pconfig
M		test/single_scale/LAMMPS/test_Spatial_Filtering/test_Spatial_Filtering.config
M		test/single_scale/LAMMPS/test_aluminum_core_template/test_aluminum_core_template.config
M		test/single_scale/MD1D/test_1D_Langevin_thermostat/test_1D_Langevin_thermostat.config
M		test/single_scale/MD1D/test_1D_initial_temp/test_1D_initial_temp.config
M		test/single_scale/MD1D/test_diffusivity/test_diffusivity.config
M		test/single_scale/MD1D/test_paraview/test_paraview.config
M		test/single_scale/MD1D/test_python/test_python.config
M		test/single_scale/MD1D/test_specific_heat/test_specific_heat.config
M		test/single_scale/MECA1D/test_1D_Energy/test_1D_Energy.config
M		test/single_scale/MECA1D/test_1D_KineticEnergy/test_1D_KineticEnergy.config
M		test/single_scale/MECA1D/test_1D_heat_pulse/test_1D_heat_pulse.config
M		test/unit/CMakeLists.txt
M		test/unit/test_vector.cc
D		third-party/akantu
A		third-party/akantu.cmake.in
A		third-party/cmake/akantu.cmake
A		third-party/cmake/akantu_iterators.cmake
A		third-party/cmake/eigen.cmake
A		third-party/cmake/lammps.cmake
M		third-party/cmake/pybind11.cmake
D		third-party/eigen
A		third-party/eigen.cmake.in
D		third-party/lammps
A		third-party/lammps.cmake.in
M	(sub)	third-party/paradis