Diffusion Sparse coupled logistic regression c5f5e4464253

Re-organised to clarify the content (ongoing)
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Authored by Thomas Bolton <thomas.arthur.bolton@gmail.com> on Jun 11 2020, 09:16.

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Re-organised to clarify the content (ongoing)

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Committed

Thomas Bolton <thomas.arthur.bolton@gmail.com>

Jun 11 2020, 09:16

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bolton

Jun 11 2020, 07:23

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rSLRbb18ee5f9edd: Added files for the framework

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Thomas Bolton <thomas.arthur.bolton@gmail.com> committed rSLRc5f5e4464253: Re-organised to clarify the content (ongoing) (authored by Thomas Bolton <thomas.arthur.bolton@gmail.com>).Jun 11 2020, 09:16

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		Path
D		LogisticRegressionFramework/Framework/Alternatives
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_ComputeWZ_NOB.m
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_ComputeWZ_NOG.m
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_Compute_HMM.m
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_NOB.m
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_NOG.m
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_Solve_Equation_NOB.m
V		LogisticRegressionFramework/Framework/{Alternatives → Miscellaneous}/RSCHMM_Solve_Equation_NOG.m
V		LogisticRegressionFramework/Framework/{ → Miscellaneous}/Compute_HMM_2STATE.m
A	(dir)	LogisticRegressionFramework/Framework/Miscellaneous/
V		LogisticRegressionFramework/Framework/{Miscellaneous ← }/Compute_HMM_2STATE.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_ComputeWZ_NOB.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_ComputeWZ_NOG.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_Compute_HMM.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_NOB.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_NOG.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_Solve_Equation_NOB.m
V		LogisticRegressionFramework/Framework/{Miscellaneous ← Alternatives}/RSCHMM_Solve_Equation_NOG.m
A	(dir)	LogisticRegressionFramework/Framework/OlderImplementations/
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_ComputeLq.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_ComputeLq_Optimized.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_ComputeLq_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_ComputeWZ.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_ComputeWZ_Optimized.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_ComputeWZ_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Eval_Logistic.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Optimized.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Optimized_ROI.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Optimized_ROI_Shiney.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Select_WorkingSet.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Shrinkage_Estimate.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Shrinkage_Estimate_Optimized.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Shrinkage_Estimate_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_SolveFully.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Solve_Equation.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Solve_Equation_Optimized.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Solve_Equation_Optimized_Deluxe_SingleVersion.m
V		LogisticRegressionFramework/Framework/{OlderImplementations ← }/RSCHMM_Solve_Equation_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_ComputeLq.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_ComputeLq_Optimized.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_ComputeLq_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_ComputeWZ.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_ComputeWZ_Optimized.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_ComputeWZ_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Eval_Logistic.m
V		LogisticRegressionFramework/{Framework → PostProcessing}/RSCHMM_Eval_Logistic_Optimized.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Optimized.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Optimized_ROI.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Optimized_ROI_Shiney.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Select_WorkingSet.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Shrinkage_Estimate.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Shrinkage_Estimate_Optimized.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Shrinkage_Estimate_Optimized_Shiney.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_SolveFully.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Solve_Equation.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Solve_Equation_Optimized.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Solve_Equation_Optimized_Deluxe_SingleVersion.m
V		LogisticRegressionFramework/Framework/{ → OlderImplementations}/RSCHMM_Solve_Equation_Optimized_Shiney.m
A	(dir)	LogisticRegressionFramework/Plotting/
V		LogisticRegressionFramework/{Plotting ← }/RSCHMM_InspectCoefs.m
V		LogisticRegressionFramework/{Plotting ← }/RSCHMM_PlotLL.m
V		{LogisticRegressionFramework/Plotting ← }/RSCHMM_PlotTP.m
V		{LogisticRegressionFramework/Plotting ← }/RSCHMM_PlotTP_Experimental.m
A	(dir)	LogisticRegressionFramework/PostProcessing/OlderImplementations/
V		LogisticRegressionFramework/PostProcessing/{OlderImplementations ← }/RSCHMM_ComputeDeltaP.m
V		LogisticRegressionFramework/PostProcessing/{OlderImplementations ← }/RSCHMM_ComputeError.m
V		LogisticRegressionFramework/PostProcessing/{ → OlderImplementations}/RSCHMM_ComputeDeltaP.m
V		LogisticRegressionFramework/PostProcessing/{ → OlderImplementations}/RSCHMM_ComputeError.m
V		LogisticRegressionFramework/{PostProcessing ← }/RSCHMM_ComputeSenSpec.m
V		LogisticRegressionFramework/{PostProcessing ← }/RSCHMM_ConstructPopulationGraph.m
V		LogisticRegressionFramework/{PostProcessing ← }/RSCHMM_DetermineCommunities.m
V		LogisticRegressionFramework/{PostProcessing ← }/RSCHMM_DetermineCommunities_Experimental.m
V		LogisticRegressionFramework/{PostProcessing ← Framework}/RSCHMM_Eval_Logistic_Optimized.m
V		LogisticRegressionFramework/{PostProcessing ← }/RSCHMM_HowManyRegions.m
V		LogisticRegressionFramework/{PostProcessing ← }/RSCHMM_PickAlpha.m
V		LogisticRegressionFramework/{ → PostProcessing}/RSCHMM_ComputeSenSpec.m
V		LogisticRegressionFramework/{ → PostProcessing}/RSCHMM_ConstructPopulationGraph.m
V		LogisticRegressionFramework/{ → PostProcessing}/RSCHMM_DetermineCommunities.m
V		LogisticRegressionFramework/{ → PostProcessing}/RSCHMM_DetermineCommunities_Experimental.m
V		LogisticRegressionFramework/{ → Simulations/Miscellaneous}/RSCHMM_Generate_Coefficients.m
V		LogisticRegressionFramework/{ → PostProcessing}/RSCHMM_HowManyRegions.m
V		LogisticRegressionFramework/{ → Plotting}/RSCHMM_InspectCoefs.m
V		LogisticRegressionFramework/{ → PostProcessing}/RSCHMM_PickAlpha.m
V		LogisticRegressionFramework/{ → Plotting}/RSCHMM_PlotLL.m
V		LogisticRegressionFramework/{ → Simulations/Miscellaneous}/RSCHMM_SelectEdgeType.m
V		LogisticRegressionFramework/{ → Simulations/Miscellaneous}/RSCHMM_Simulate_Balanced.m
A	(dir)	LogisticRegressionFramework/Simulations/Miscellaneous/
V		LogisticRegressionFramework/{Simulations/Miscellaneous ← }/RSCHMM_Generate_Coefficients.m
V		LogisticRegressionFramework/{Simulations/Miscellaneous ← }/RSCHMM_SelectEdgeType.m
V		LogisticRegressionFramework/Simulations/{Miscellaneous ← }/RSCHMM_Simulate.m
V		LogisticRegressionFramework/{Simulations/Miscellaneous ← }/RSCHMM_Simulate_Balanced.m
V		LogisticRegressionFramework/Simulations/{Miscellaneous ← }/RSCHMM_Simulate_Subject.m
V		LogisticRegressionFramework/Simulations/{Miscellaneous ← }/RSCHMM_Simulate_Subject_Balanced.m
V		LogisticRegressionFramework/Simulations/{ → Miscellaneous}/RSCHMM_Simulate.m
V		LogisticRegressionFramework/Simulations/{ → Miscellaneous}/RSCHMM_Simulate_Subject.m
V		LogisticRegressionFramework/Simulations/{ → Miscellaneous}/RSCHMM_Simulate_Subject_Balanced.m
V		OtherApproaches/{ → MAR_EC}/CBIG_RL2017_ar_mls.m
A	(dir)	OtherApproaches/CSD_EC/
V		OtherApproaches/{CSD_EC ← }/RSCHMM_SolveCS.m
V		OtherApproaches/{CSD_EC ← SparseECfinder}/ReadMe.txt
V		OtherApproaches/{CSD_EC ← SparseECfinder}/con_finder.m
V		OtherApproaches/{CSD_EC ← SparseECfinder}/csd_array.m
V		OtherApproaches/{CSD_EC ← SparseECfinder}/csd_array_bootstrap.m
V		OtherApproaches/{CSD_EC ← SparseECfinder}/csd_array_nulldist.m
V		OtherApproaches/{CSD_EC ← SparseECfinder}/gradientconjugate_lasso.m
A	(dir)	OtherApproaches/GLasso_FC/
V		OtherApproaches/{GLasso_FC ← }/RSCHMM_SolveGLasso.m
V		OtherApproaches/{GLasso_FC ← }/graphicalLasso.m
A	(dir)	OtherApproaches/MAR_EC/
V		OtherApproaches/{MAR_EC ← }/CBIG_RL2017_ar_mls.m
V		OtherApproaches/{MAR_EC ← }/RSCHMM_MARNull.m
V		OtherApproaches/{MAR_EC ← }/RSCHMM_SolveMAR.m
V		OtherApproaches/{ → PPA_FC}/PPA.m
A	(dir)	OtherApproaches/PPA_FC/
V		OtherApproaches/{PPA_FC ← }/PPA.m
V		OtherApproaches/{PPA_FC ← }/RSCHMM_SolveTaglia.m
V		OtherApproaches/{ → MAR_EC}/RSCHMM_MARNull.m
V		OtherApproaches/{ → CSD_EC}/RSCHMM_SolveCS.m
V		OtherApproaches/{ → GLasso_FC}/RSCHMM_SolveGLasso.m
V		OtherApproaches/{ → MAR_EC}/RSCHMM_SolveMAR.m
V		OtherApproaches/{ → PPA_FC}/RSCHMM_SolveTaglia.m
D		OtherApproaches/SparseECfinder
V		OtherApproaches/{SparseECfinder → CSD_EC}/ReadMe.txt
V		OtherApproaches/{SparseECfinder → CSD_EC}/con_finder.m
V		OtherApproaches/{SparseECfinder → CSD_EC}/csd_array.m
V		OtherApproaches/{SparseECfinder → CSD_EC}/csd_array_bootstrap.m
V		OtherApproaches/{SparseECfinder → CSD_EC}/csd_array_nulldist.m
V		OtherApproaches/{SparseECfinder → CSD_EC}/gradientconjugate_lasso.m
V		OtherApproaches/{ → GLasso_FC}/graphicalLasso.m
V		{ → LogisticRegressionFramework/Plotting}/RSCHMM_PlotTP.m
V		{ → LogisticRegressionFramework/Plotting}/RSCHMM_PlotTP_Experimental.m
D		Script_Figure1.m
A		readme.rtf