Merge branch 'master' into features/materials
bd9c47eb68cb
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Authored by frerot on Jul 1 2022, 14:10.

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Merge branch 'master' into features/materials

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Committed

frerot

Jul 1 2022, 14:10

Pushed

frerot

Jul 1 2022, 14:10

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rTAMAAS3e30cf120309: added option to turn off directory dump in dumpers
rTAMAAS91499936661a: added MFrontMaterial class

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frerot committed rTAMAASbd9c47eb68cb: Merge branch 'master' into features/materials (authored by frerot).Jul 1 2022, 14:10

Merged Changes

Commit	Author	Details	Committed
3e30cf120309	frerot	added option to turn off directory dump in dumpers	Jul 1 2022
8eccc4352ae8	frerot	updated changelog	Jun 30 2022
3661df7e0ddf	frerot	updated copyright for Sphinx documentation	Jun 30 2022
a674186d994c	frerot	updated copyrights for Python files	Jun 29 2022
4b538827d5d4	frerot	updated copyrights for C++ files	Jun 29 2022
22ae9a858766	frerot	added tamaas.utils.radial_average	Jun 28 2022
6de21c3d3743	frerot	bumped required python and scons versions	Jun 21 2022
a93ea8a43b13	frerot	added a stat method to compute area of graph of function	Jun 20 2022
b4188719be68	frerot	added copyright, maintainer, license to config files	Jun 20 2022
9a1c04f110fb	frerot	clang-tidy is a pia	Jun 3 2022
0e343655dd45	frerot	using VERBOSE from env to control verbosity make-like	Jun 2 2022
9f0fc6dcf47f	frerot	removed readability checks from clang-tidy	Jun 2 2022
04c4b708a638	frerot	added doc on custom solvers	Jun 2 2022
c076a331e848	frerot	fixed circular include	Jun 1 2022
b93169c6395f	frerot	added compile db to default targets	Jun 1 2022
e54c8b4b0e9b	frerot	added custom solver example using scipy	May 31 2022
236648d0522c	frerot	allowing sub-classing of contact solver in python	May 31 2022
0d42fffa0509	frerot	exposing elastic energy functionals in python	May 31 2022
490c191a4b02	frerot	fixed dependency of cost on discretization	May 31 2022
0049a94bd5af	frerot	added API to IntegralOperator to convert into scipy's LinearOperator	May 30 2022
a629e57f02ba	frerot	updated CHANGELOG	May 23 2022
2ffd909500cc	frerot	temporary fix for https://github.com/pypa/pip/issues/7953	May 23 2022
3c1f495bddb8	frerot	converted setup.py.in to setup.cfg.in	May 23 2022
2fbc8bbff82f	frerot	updating emails in AUTHORS files	May 18 2022
0bc84502f1cd	frerot	quoting citations in README	May 18 2022
387b2079c8ec	frerot	KatoSaturated: registering + changing sign of plastic correction	May 16 2022
a95bae08f7a0	frerot	setting default visibility to hidden for wheels	May 16 2022
540f525efedc	frerot	increasing tolerance for newton-krylov solver	May 13 2022
7b5ec4cc38d8	frerot	added dump of surface fields in VTK files	May 12 2022
38eb11899a50	frerot	fixed decorator ordering	May 12 2022
a8986393d27a	frerot	added netcdf to paraview file conversion	May 11 2022
24351fe95e2b	frerot	added @classmethod for read functions in dumpers	May 11 2022
6508dd2474cb	frerot	updated changelog	May 10 2022

Changes (200)
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				Path
	M			.clang-tidy
	M			.gitlab-ci.yml
	M			AUTHORS
	M			CHANGELOG.md
	M			INFOS.py
	M			README.md
	M			SConstruct
	M			doc/SConscript
	M			doc/doxygen/Doxyfile.in
	M			doc/sphinx/source/conf.py
	M			doc/sphinx/source/contact.rst
	M			doc/sphinx/source/examples.rst
	A			examples/scipy_penalty.py
	M			python/MANIFEST.in
	M			python/SConscript
	M			python/cast.hh
	M			python/numpy.hh
	V			python/{pypi.md ← setup.py.in}
	A			python/pyproject.toml
	A			python/setup.cfg.in
	A			python/setup.py
	V			python/{setup.py.in → pypi.md}
	M			python/tamaas/__init__.py.in
	M			python/tamaas/__main__.py
	M			python/tamaas/compute.py
	M			python/tamaas/dumpers/__init__.py
	M			python/tamaas/dumpers/_helper.py
	M			python/tamaas/nonlinear_solvers/__init__.py
	M			python/tamaas/utils.py
	M			python/tamaas_module.cpp
	M			python/wrap.hh
	M			python/wrap/compute.cpp
	M			python/wrap/core.cpp
	M			python/wrap/model.cpp
	M			python/wrap/model_extensions.hh
	M			python/wrap/mpi.cpp
	M			python/wrap/percolation.cpp
	M			python/wrap/solvers.cpp
	M			python/wrap/surface.cpp
	M			python/wrap/test_features.cpp
	M			site_scons/detect.py
	M			site_scons/site_init.py
	M			site_scons/site_tools/doxygen.py
	M			site_scons/site_tools/nvcc.py
	M			site_scons/site_tools/sphinx.py
	M			site_scons/site_tools/tamaas.py
	M			site_scons/version.py
	M			src/SConscript
	M			src/core/array.hh
	M			src/core/computes.cpp
	M			src/core/computes.hh
	M			src/core/cuda/cufft_engine.cpp
	M			src/core/cuda/cufft_engine.hh
	M			src/core/cuda/unified_allocator.hh
	M			src/core/fft_engine.cpp
	M			src/core/fft_engine.hh
	M			src/core/fftw/fftw_allocator.hh
	M			src/core/fftw/fftw_engine.cpp
	M			src/core/fftw/fftw_engine.hh
	M			src/core/fftw/interface.hh
	M			src/core/fftw/interface_impl.hh
	M			src/core/fftw/mpi/fftw_mpi_engine.cpp
	M			src/core/fftw/mpi/fftw_mpi_engine.hh
	M			src/core/fftw/mpi/interface.hh
	M			src/core/grid.cpp
	M			src/core/grid.hh
	M			src/core/grid_base.hh
	M			src/core/grid_hermitian.cpp
	M			src/core/grid_hermitian.hh
	M			src/core/grid_tmpl.hh
	M			src/core/grid_view.hh
	M			src/core/iterator.hh
	M			src/core/logger.cpp
	M			src/core/logger.hh
	M			src/core/loop.cpp
	M			src/core/loop.hh
	M			src/core/loops/apply.hh
	M			src/core/loops/loop_utils.hh
	M			src/core/mpi_interface.cpp
	M			src/core/mpi_interface.hh
	M			src/core/partitioner.hh
	M			src/core/ranges.hh
	M			src/core/static_types.hh
	M			src/core/statistics.cpp
	M			src/core/statistics.hh
	M			src/core/tamaas.cpp
	M			src/core/tamaas.hh
	M			src/model/adhesion_functional.cpp
	M			src/model/adhesion_functional.hh
	M			src/model/be_engine.cpp
	M			src/model/be_engine.hh
	M			src/model/boussinesq.cpp
	M			src/model/boussinesq.hh
	M			src/model/boussinesq_helper.hh
	M			src/model/elastic_functional.cpp
	M			src/model/elastic_functional.hh
	M			src/model/elasto_plastic/isotropic_hardening.cpp
	M			src/model/functional.hh
	M			src/model/hooke.cpp
	M			src/model/hooke.hh
	M			src/model/influence.hh
	M			src/model/integral_operator.cpp
	M			src/model/integral_operator.hh
	M			src/model/integration/accumulator.hh
	M			src/model/integration/element.cpp
	M			src/model/integration/element.hh
	M			src/model/integration/integrator.hh
	M			src/model/kelvin.cpp
	M			src/model/kelvin.hh
	M			src/model/kelvin_helper.hh
	M			src/model/meta_functional.cpp
	M			src/model/meta_functional.hh
	M			src/model/mindlin.cpp
	M			src/model/mindlin.hh
	M			src/model/model.cpp
	M			src/model/model.hh
	M			src/model/model_dumper.hh
	M			src/model/model_factory.cpp
	M			src/model/model_factory.hh
	M			src/model/model_template.cpp
	M			src/model/model_template.hh
	M			src/model/model_type.cpp
	M			src/model/model_type.hh
	M			src/model/residual.cpp
	M			src/model/residual.hh
	M			src/model/volume_potential.cpp
	M			src/model/volume_potential.hh
	M			src/model/westergaard.cpp
	M			src/model/westergaard.hh
	M			src/percolation/flood_fill.cpp
	M			src/percolation/flood_fill.hh
	M			src/solvers/beck_teboulle.cpp
	M			src/solvers/beck_teboulle.hh
	M			src/solvers/condat.cpp
	M			src/solvers/condat.hh
	M			src/solvers/contact_solver.cpp
	M			src/solvers/contact_solver.hh
	M			src/solvers/dfsane_solver.cpp
	M			src/solvers/dfsane_solver.hh
	M			src/solvers/ep_solver.cpp
	M			src/solvers/ep_solver.hh
	M			src/solvers/epic.cpp
	M			src/solvers/epic.hh
	M			src/solvers/kato.cpp
	M			src/solvers/kato.hh
	M			src/solvers/kato_saturated.cpp
	M			src/solvers/kato_saturated.hh
	M			src/solvers/polonsky_keer_rey.cpp
	M			src/solvers/polonsky_keer_rey.hh
	M			src/solvers/polonsky_keer_tan.cpp
	M			src/solvers/polonsky_keer_tan.hh
	M			src/surface/filter.hh
	M			src/surface/isopowerlaw.cpp
	M			src/surface/isopowerlaw.hh
	M			src/surface/regularized_powerlaw.cpp
	M			src/surface/regularized_powerlaw.hh
	M			src/surface/surface_generator.cpp
	M			src/surface/surface_generator.hh
	M			src/surface/surface_generator_filter.cpp
	M			src/surface/surface_generator_filter.hh
	M			src/surface/surface_generator_random_phase.cpp
	M			src/surface/surface_generator_random_phase.hh
	M			src/tamaas_info.hh
	M			tests/SConscript
	M			tests/ci/build_wheels.sh
	M			tests/conftest.py
	M			tests/fftfreq.py
	M			tests/mpi_routines.py
	M			tests/test.hh
	M			tests/test_boussinesq_surface.py
	M			tests/test_copy.py
	M			tests/test_dumper.py
	M			tests/test_epic.py
	M			tests/test_fftfreq.cpp
	M			tests/test_fftw.cpp
	M			tests/test_flood_fill.py
	M			tests/test_grid.cpp
	M			tests/test_gtest.py
	M			tests/test_hertz.py
	M			tests/test_hertz_disp.py
	M			tests/test_hertz_kato.py
	M			tests/test_integral_operators.py
	M			tests/test_integration.cpp
	M			tests/test_loop.cpp
	A			tests/test_matvec.py
	M			tests/test_memory.py
	M			tests/test_model.cpp
	M			tests/test_mpi.cpp
	M			tests/test_mpi_routines.py
	M			tests/test_patch_plasticity.py
	M			tests/test_patch_westergaard.py
	M			tests/test_publications.py
	M			tests/test_rough_surface.cpp
	M			tests/test_saturated_pressure.py
	M			tests/test_static_types.cpp
	M			tests/test_surface.py
	M			tests/test_tangential.py
	M			tests/test_voigt.py
	M			tests/test_westergaard.py
	M			third-party/expolit/AUTHORS