GraphDevelopment-of-Analysis…
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Development-of-Analysis…
History Graph
History Graph
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| 1a44d300663d | deen | Changed classes such that Currentdrop is always mean | Mar 22 2019 | ||||
| 47a96ece775c | deen | import Range1D | Mar 22 2019 | ||||
| 94b4da545ead | deen | Merge branch 'master' of ssh://c4science.ch/source/Nanopore-tools | Mar 22 2019 | ||||
| bac909099f2c | deen | xlim and ylim on figure | Mar 22 2019 | ||||
| 524548c68787 | deen | Removed import EventPlots, was unused | Mar 22 2019 | ||||
| 60231057e4c9 | deen | added limits to the function | Mar 22 2019 | ||||
| c15fa882f3b4 | Axopatch | Merge remote-tracking branch 'origin/master' | Mar 13 2019 | ||||
| f965f55c4d5c | Axopatch | Fixed capital letter | Mar 13 2019 | ||||
| b312fafccb7f | deen | bugfix | Mar 13 2019 | ||||
| 3d74c7680482 | Axopatch | added GetEventTypes | Mar 13 2019 | ||||
| 930e44a351de | Axopatch | Open multiple files | Mar 13 2019 | ||||
| c4a4ce134a66 | Axopatch | Merge remote-tracking branch 'origin/master' | Mar 13 2019 | ||||
| c365cbf76e0b | Microtubulus <michael.graf> | Added Drndic pore estimation. | Feb 28 2019 | ||||
| 819291dbdcac | Axopatch | Slight modification | Feb 25 2019 | ||||
| 23bbd39cbe27 | schneuwly | Added WaveletDenoising function based on DOI: 10.1021/acs.nanolett.8b0438 | Feb 19 2019 | ||||
| 32cc2a9272f4 | Axopatch | Merge remote-tracking branch 'origin/master' | Jan 28 2019 | ||||
| d37dbe352a43 | Axopatch | for PSDs | Jan 28 2019 | ||||
| 321317e9b140 | schneuwly | more docstrings | Jan 27 2019 | ||||
| 978ab3ff6e83 | schneuwly | added docstrings to document some functions | Jan 24 2019 | ||||
| 475f5761a285 | deen | Simplified version of GTau plot using Bokeh | Jan 16 2019 | ||||
| ac035c18794d | deen | Added PSF plotting function | Jan 14 2019 | ||||
| 4992f8975ef8 | deen | Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows… | Dec 12 2018 | ||||
| 2ba93daf2eed | Axopatch | absolute value of tick | Dec 12 2018 | ||||
| c710ce839009 | Axopatch | Fixed deprecated function in pandas. | Dec 12 2018 | ||||
| 1fbb9b0533a3 | Axopatch | added option to fit IV with exponential | Dec 11 2018 | ||||
| c6b661d2d480 | Axopatch | Added function GetParameters() to see default parameters Changed… | Dec 11 2018 | ||||
| 0e9cb3c37ced | Axopatch | Merge remote-tracking branch 'origin/master' | Dec 10 2018 | ||||
| 0b82d48a1d63 | Axopatch | Clear matplotGui | Dec 10 2018 | ||||
| 9530fc72ff2c | deen | Import Functions in LoadData | Dec 10 2018 | ||||
| 3e9d528dfa0a | deen | added back plotgui.py | Dec 6 2018 | ||||
| e916c0949892 | deen | Added LoadVariable function | Dec 5 2018 | ||||
| 4e1051e88fcb | deen | Removed cutting of FullTrace | Dec 5 2018 | ||||
| 42aa378d194c | deen | Implemented plotting in Bokeh | Dec 5 2018 | ||||
| ce6047fe7825 | deen | Added Plotting function for simple trace plot | Dec 5 2018 | ||||
| f6493234bb87 | deen | Optimized imports, restructured code a bit | Dec 5 2018 | ||||
| f6dac0696a44 | deen | Moved Loading data functions to new script, for easier access. Moved unused… | Dec 5 2018 | ||||
| c174859d5b62 | deen | Cleaning up of git | Dec 5 2018 | ||||
| d20e559ae01d | deen | Added check for length to not show error message if missing data | Dec 5 2018 | ||||
| acffb6d8ec58 | deen | Merge remote-tracking branch 'origin/master' | Dec 4 2018 | ||||
| ecfb78678b73 | deen | changed check to not 0 | Dec 4 2018 | ||||
| 65e4816bf5ea | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Nov 29 2018 | ||||
| fbf8f3beb1e9 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Nov 29 2018 | ||||
| 2bb51f0f8cee | thakur/Axopatch | Added log scale function | Nov 29 2018 | ||||
| 2ef35a200eac | thakur | merge | Nov 28 2018 | ||||
| ac1107061311 | thakur | -updated for csv files -semilog graphs | Nov 23 2018 | ||||
| 06756ab5ac7e | deen | Changed opening of abf files, current units appear to be in pA. | Nov 23 2018 | ||||
| 4debbda11487 | deen | bugfix for using default extension if none is specified. Added string with… | Nov 21 2018 | ||||
| cf08f7c66c2b | thakur | dated 20/11/2018 | Nov 20 2018 | ||||
| 4c63018c6ea0 | deen | minor bug | Nov 6 2018 | ||||
| d8f7aeba5740 | deen | Merge remote-tracking branch 'origin/master' | Nov 6 2018 | ||||
| 72d130d353ae | deen | Added verbose options to most load functions and event detection and IV making. | Nov 6 2018 | ||||
| 1deb5d5da264 | thakur/Axopatch | Corrected typo for lenght --> length | Oct 29 2018 | ||||
| 1b48a3ac0be4 | deen | Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for… | Oct 23 2018 | ||||
| dfe0ecb79611 | deen | fix | Oct 23 2018 | ||||
| d4e385f6328a | deen | Changed fit types. Added Standard error key (SE) that correctly captures the… | Oct 23 2018 | ||||
| aaef6f69371d | deen | Changed to Rough | Sep 26 2018 | ||||
| 52897e16647e | deen | Added voltage in plot | Sep 26 2018 | ||||
| b8b0a10ea649 | deen | Misspelling...... | Sep 26 2018 | ||||
| 0304f8d4c759 | deen | Bugfix, incorrectly estimating baseline | Sep 26 2018 | ||||
| 3661c2d7932e | deen | Added titlte | Sep 26 2018 | ||||
| 62be1090664b | deen | Minor bugfix for plotting if not fitted | Sep 26 2018 | ||||
| d7388e3b03c0 | deen | Bugfix for opening data | Sep 26 2018 | ||||
| 23cadb544365 | deen | fixed plotting of events when clicked. Added option to show original trace with… | Sep 26 2018 | ||||
| a8388ba67ded | deen | Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split… | Sep 26 2018 | ||||
| 933b5123747b | deen | Added interactive G-tau plot. Shows only CUSUM fitted events for now (with… | Sep 25 2018 | ||||
| 1f6786480d9e | deen | Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses. | Sep 25 2018 | ||||
| bde0ca0d1dab | deen | Changed saving of data | Sep 21 2018 | ||||
| c792e13c699c | Microtubulus <michael.graf> | no message | Sep 21 2018 | ||||
| 2a8396bb4a6d | deen | Implement CUSUM in event detection | Sep 21 2018 | ||||
| 38d9c4366802 | deen | Fixed CUSUM function | Sep 21 2018 | ||||
| c3550ed6e891 | deen | move to directory | Sep 21 2018 | ||||
| b3c62d386c00 | deen | Revert "Change directory for making IV" | Sep 21 2018 | ||||
| 3b3cb8f58ddd | deen | Merge remote-tracking branch 'origin/master' | Sep 21 2018 | ||||
| 2e1d4a0e578d | deen | Change directory for making IV | Sep 21 2018 | ||||
| 30bc3a694243 | deen | Merge remote-tracking branch 'origin/master' | Sep 20 2018 | ||||
| 5f63cce9e6e9 | deen | added delay variable | Sep 20 2018 | ||||
| 29927513e285 | deen | Merge remote-tracking branch 'origin/master' | Sep 12 2018 | ||||
| 451b6c50e0b3 | deen | make type of coefficient all | Sep 12 2018 | ||||
| 2a248ed4f722 | deen | Added option for lowpass | Sep 12 2018 | ||||
| d88f1af316db | deen | Implemented CUSUM | Sep 12 2018 | ||||
| abf170dbe284 | Microtubulus <michael.graf> | Added Capacitance Measurement Code: CapacitanceCalc.py | Sep 11 2018 | ||||
| bbda3fc18b16 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Sep 10 2018 | ||||
| e6a5c296a5e1 | Microtubulus <michael.graf> | osmotixvsconcdifference | Sep 10 2018 | ||||
| 06472a371340 | Microtubulus <michael.graf> | Redox | Sep 10 2018 | ||||
| 0f999a824045 | deen | Added option to save as CSV | Sep 10 2018 | ||||
| 6175240322bf | deen | Check if directory for saving exists, otherwise make it | Sep 7 2018 | ||||
| d9ad6bb5c745 | deen | variable changes | Sep 7 2018 | ||||
| 142711bf3427 | Jochem | Forgot to remove append | Sep 7 2018 | ||||
| 53eba428216e | Jochem | bug needs to be string | Sep 7 2018 | ||||
| c586f9ef2da1 | Jochem | Assertion bug, changed layout | Sep 7 2018 | ||||
| 531c52b5c6e1 | Jochem | Added option to force run and option to cut out the saved chunks before… | Sep 7 2018 | ||||
| 8c5513d52bcc | Jochem | Estimate the impulse response length of the filter to improve calculation speed | Sep 7 2018 | ||||
| 401a6116ee17 | Chimera_2nd | Merge remote-tracking branch 'origin/master' | Sep 7 2018 | ||||
| 671b9a4959da | Chimera_2nd | Can load Chimera files as well now | Sep 7 2018 | ||||
| 2fb6a1c505c2 | Jochem | Added option to skip fitting if the batchevents has already been done with the… | Sep 6 2018 | ||||
| 84359bf20bde | Jochem | Changed filename of EventDetection. Added possibility to directly run… | Sep 6 2018 | ||||
| 44d1d2696158 | Jochem | Merge remote-tracking branch 'origin/master' | Sep 5 2018 | ||||
| 4dc9fe63cc83 | Jochem | Added equation for calculating size of nanocapillary and shrunken… | Sep 5 2018 | ||||
| 632f91e3cc93 | thakur | updated 2D plotting script with help of Jochem | Aug 29 2018 | ||||
| ee0c6e9047ce | Jochem | Fix for Mukesh | Aug 29 2018 |
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