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Commit | Author | Details | Committed | ||||
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60231057e4c9 | deen | added limits to the function | Mar 22 2019 | ||||
c15fa882f3b4 | Axopatch | Merge remote-tracking branch 'origin/master' | Mar 13 2019 | ||||
f965f55c4d5c | Axopatch | Fixed capital letter | Mar 13 2019 | ||||
b312fafccb7f | deen | bugfix | Mar 13 2019 | ||||
3d74c7680482 | Axopatch | added GetEventTypes | Mar 13 2019 | ||||
930e44a351de | Axopatch | Open multiple files | Mar 13 2019 | ||||
c4a4ce134a66 | Axopatch | Merge remote-tracking branch 'origin/master' | Mar 13 2019 | ||||
c365cbf76e0b | Microtubulus <michael.graf> | Added Drndic pore estimation. | Feb 28 2019 | ||||
819291dbdcac | Axopatch | Slight modification | Feb 25 2019 | ||||
23bbd39cbe27 | schneuwly | Added WaveletDenoising function based on DOI: 10.1021/acs.nanolett.8b0438 | Feb 19 2019 | ||||
32cc2a9272f4 | Axopatch | Merge remote-tracking branch 'origin/master' | Jan 28 2019 | ||||
d37dbe352a43 | Axopatch | for PSDs | Jan 28 2019 | ||||
321317e9b140 | schneuwly | more docstrings | Jan 27 2019 | ||||
978ab3ff6e83 | schneuwly | added docstrings to document some functions | Jan 24 2019 | ||||
475f5761a285 | deen | Simplified version of GTau plot using Bokeh | Jan 16 2019 | ||||
ac035c18794d | deen | Added PSF plotting function | Jan 14 2019 | ||||
4992f8975ef8 | deen | Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows… | Dec 12 2018 | ||||
2ba93daf2eed | Axopatch | absolute value of tick | Dec 12 2018 | ||||
c710ce839009 | Axopatch | Fixed deprecated function in pandas. | Dec 12 2018 | ||||
1fbb9b0533a3 | Axopatch | added option to fit IV with exponential | Dec 11 2018 | ||||
c6b661d2d480 | Axopatch | Added function GetParameters() to see default parameters Changed… | Dec 11 2018 | ||||
0e9cb3c37ced | Axopatch | Merge remote-tracking branch 'origin/master' | Dec 10 2018 | ||||
0b82d48a1d63 | Axopatch | Clear matplotGui | Dec 10 2018 | ||||
9530fc72ff2c | deen | Import Functions in LoadData | Dec 10 2018 | ||||
3e9d528dfa0a | deen | added back plotgui.py | Dec 6 2018 | ||||
e916c0949892 | deen | Added LoadVariable function | Dec 5 2018 | ||||
4e1051e88fcb | deen | Removed cutting of FullTrace | Dec 5 2018 | ||||
42aa378d194c | deen | Implemented plotting in Bokeh | Dec 5 2018 | ||||
ce6047fe7825 | deen | Added Plotting function for simple trace plot | Dec 5 2018 | ||||
f6493234bb87 | deen | Optimized imports, restructured code a bit | Dec 5 2018 | ||||
f6dac0696a44 | deen | Moved Loading data functions to new script, for easier access. Moved unused… | Dec 5 2018 | ||||
c174859d5b62 | deen | Cleaning up of git | Dec 5 2018 | ||||
d20e559ae01d | deen | Added check for length to not show error message if missing data | Dec 5 2018 | ||||
acffb6d8ec58 | deen | Merge remote-tracking branch 'origin/master' | Dec 4 2018 | ||||
ecfb78678b73 | deen | changed check to not 0 | Dec 4 2018 | ||||
65e4816bf5ea | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Nov 29 2018 | ||||
fbf8f3beb1e9 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Nov 29 2018 | ||||
2bb51f0f8cee | thakur/Axopatch | Added log scale function | Nov 29 2018 | ||||
2ef35a200eac | thakur | merge | Nov 28 2018 | ||||
ac1107061311 | thakur | -updated for csv files -semilog graphs | Nov 23 2018 | ||||
06756ab5ac7e | deen | Changed opening of abf files, current units appear to be in pA. | Nov 23 2018 | ||||
4debbda11487 | deen | bugfix for using default extension if none is specified. Added string with… | Nov 21 2018 | ||||
cf08f7c66c2b | thakur | dated 20/11/2018 | Nov 20 2018 | ||||
4c63018c6ea0 | deen | minor bug | Nov 6 2018 | ||||
d8f7aeba5740 | deen | Merge remote-tracking branch 'origin/master' | Nov 6 2018 | ||||
72d130d353ae | deen | Added verbose options to most load functions and event detection and IV making. | Nov 6 2018 | ||||
1deb5d5da264 | thakur/Axopatch | Corrected typo for lenght --> length | Oct 29 2018 | ||||
1b48a3ac0be4 | deen | Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for… | Oct 23 2018 | ||||
dfe0ecb79611 | deen | fix | Oct 23 2018 | ||||
d4e385f6328a | deen | Changed fit types. Added Standard error key (SE) that correctly captures the… | Oct 23 2018 | ||||
aaef6f69371d | deen | Changed to Rough | Sep 26 2018 | ||||
52897e16647e | deen | Added voltage in plot | Sep 26 2018 | ||||
b8b0a10ea649 | deen | Misspelling...... | Sep 26 2018 | ||||
0304f8d4c759 | deen | Bugfix, incorrectly estimating baseline | Sep 26 2018 | ||||
3661c2d7932e | deen | Added titlte | Sep 26 2018 | ||||
62be1090664b | deen | Minor bugfix for plotting if not fitted | Sep 26 2018 | ||||
d7388e3b03c0 | deen | Bugfix for opening data | Sep 26 2018 | ||||
23cadb544365 | deen | fixed plotting of events when clicked. Added option to show original trace with… | Sep 26 2018 | ||||
a8388ba67ded | deen | Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split… | Sep 26 2018 | ||||
933b5123747b | deen | Added interactive G-tau plot. Shows only CUSUM fitted events for now (with… | Sep 25 2018 | ||||
1f6786480d9e | deen | Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses. | Sep 25 2018 | ||||
bde0ca0d1dab | deen | Changed saving of data | Sep 21 2018 | ||||
c792e13c699c | Microtubulus <michael.graf> | no message | Sep 21 2018 | ||||
2a8396bb4a6d | deen | Implement CUSUM in event detection | Sep 21 2018 | ||||
38d9c4366802 | deen | Fixed CUSUM function | Sep 21 2018 | ||||
c3550ed6e891 | deen | move to directory | Sep 21 2018 | ||||
b3c62d386c00 | deen | Revert "Change directory for making IV" | Sep 21 2018 | ||||
3b3cb8f58ddd | deen | Merge remote-tracking branch 'origin/master' | Sep 21 2018 | ||||
2e1d4a0e578d | deen | Change directory for making IV | Sep 21 2018 | ||||
30bc3a694243 | deen | Merge remote-tracking branch 'origin/master' | Sep 20 2018 | ||||
5f63cce9e6e9 | deen | added delay variable | Sep 20 2018 | ||||
29927513e285 | deen | Merge remote-tracking branch 'origin/master' | Sep 12 2018 | ||||
451b6c50e0b3 | deen | make type of coefficient all | Sep 12 2018 | ||||
2a248ed4f722 | deen | Added option for lowpass | Sep 12 2018 | ||||
d88f1af316db | deen | Implemented CUSUM | Sep 12 2018 | ||||
abf170dbe284 | Microtubulus <michael.graf> | Added Capacitance Measurement Code: CapacitanceCalc.py | Sep 11 2018 | ||||
bbda3fc18b16 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Sep 10 2018 | ||||
e6a5c296a5e1 | Microtubulus <michael.graf> | osmotixvsconcdifference | Sep 10 2018 | ||||
06472a371340 | Microtubulus <michael.graf> | Redox | Sep 10 2018 | ||||
0f999a824045 | deen | Added option to save as CSV | Sep 10 2018 | ||||
6175240322bf | deen | Check if directory for saving exists, otherwise make it | Sep 7 2018 | ||||
d9ad6bb5c745 | deen | variable changes | Sep 7 2018 | ||||
142711bf3427 | Jochem | Forgot to remove append | Sep 7 2018 | ||||
53eba428216e | Jochem | bug needs to be string | Sep 7 2018 | ||||
c586f9ef2da1 | Jochem | Assertion bug, changed layout | Sep 7 2018 | ||||
531c52b5c6e1 | Jochem | Added option to force run and option to cut out the saved chunks before… | Sep 7 2018 | ||||
8c5513d52bcc | Jochem | Estimate the impulse response length of the filter to improve calculation speed | Sep 7 2018 | ||||
401a6116ee17 | Chimera_2nd | Merge remote-tracking branch 'origin/master' | Sep 7 2018 | ||||
671b9a4959da | Chimera_2nd | Can load Chimera files as well now | Sep 7 2018 | ||||
2fb6a1c505c2 | Jochem | Added option to skip fitting if the batchevents has already been done with the… | Sep 6 2018 | ||||
84359bf20bde | Jochem | Changed filename of EventDetection. Added possibility to directly run… | Sep 6 2018 | ||||
44d1d2696158 | Jochem | Merge remote-tracking branch 'origin/master' | Sep 5 2018 | ||||
4dc9fe63cc83 | Jochem | Added equation for calculating size of nanocapillary and shrunken… | Sep 5 2018 | ||||
632f91e3cc93 | thakur | updated 2D plotting script with help of Jochem | Aug 29 2018 | ||||
ee0c6e9047ce | Jochem | Fix for Mukesh | Aug 29 2018 | ||||
f1841c21414e | thakur | Merge remote-tracking branch 'origin/master' | Aug 29 2018 | ||||
81f6de7bbb0f | thakur | just checking dont bother | Aug 29 2018 | ||||
6c8c5ceac278 | Jochem | Added comments for Mukesh | Aug 29 2018 | ||||
ccf851a2f6d0 | Jochem | Minor changes | Aug 29 2018 | ||||
7e569bbb88d0 | Jochem | Plot events function inside the class. Formatted axis and plotted baseline and… | Aug 29 2018 |
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