Nanopore-tools/Functions.pymaster
Nanopore-tools/Functions.py
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
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ebb436057178 | deen | Modified detection of events, added option to fit traces with function and use… | Jun 7 2019 | |||
a0bf6cc71c88 | deen | Modified plotting of PSD | May 9 2019 | |||
551a42365c11 | deen | Removed some prints | Apr 3 2019 | |||
c365cbf76e0b | Microtubulus <michael.graf> | Added Drndic pore estimation. | Feb 28 2019 | |||
23bbd39cbe27 | schneuwly | Added WaveletDenoising function based on DOI: 10.1021/acs.nanolett.8b0438 | Feb 19 2019 | |||
321317e9b140 | schneuwly | more docstrings | Jan 27 2019 | |||
978ab3ff6e83 | schneuwly | added docstrings to document some functions | Jan 24 2019 | |||
ac035c18794d | deen | Added PSF plotting function | Jan 14 2019 | |||
c710ce839009 | Axopatch | Fixed deprecated function in pandas. | Dec 12 2018 | |||
c6b661d2d480 | Axopatch | Added function GetParameters() to see default parameters Changed… | Dec 11 2018 | |||
ce6047fe7825 | deen | Added Plotting function for simple trace plot | Dec 5 2018 | |||
f6493234bb87 | deen | Optimized imports, restructured code a bit | Dec 5 2018 | |||
f6dac0696a44 | deen | Moved Loading data functions to new script, for easier access. Moved unused… | Dec 5 2018 | |||
d20e559ae01d | deen | Added check for length to not show error message if missing data | Dec 5 2018 | |||
2ef35a200eac | thakur | merge | Nov 28 2018 | |||
06756ab5ac7e | deen | Changed opening of abf files, current units appear to be in pA. | Nov 23 2018 | |||
cf08f7c66c2b | thakur | dated 20/11/2018 | Nov 20 2018 | |||
72d130d353ae | deen | Added verbose options to most load functions and event detection and IV making. | Nov 6 2018 | |||
1b48a3ac0be4 | deen | Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for… | Oct 23 2018 | |||
d4e385f6328a | deen | Changed fit types. Added Standard error key (SE) that correctly captures the… | Oct 23 2018 | |||
1f6786480d9e | deen | Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses. | Sep 25 2018 | |||
bde0ca0d1dab | deen | Changed saving of data | Sep 21 2018 | |||
38d9c4366802 | deen | Fixed CUSUM function | Sep 21 2018 | |||
29927513e285 | deen | Merge remote-tracking branch 'origin/master' | Sep 12 2018 | |||
d88f1af316db | deen | Implemented CUSUM | Sep 12 2018 | |||
bbda3fc18b16 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Sep 10 2018 | |||
06472a371340 | Microtubulus <michael.graf> | Redox | Sep 10 2018 | |||
d9ad6bb5c745 | deen | variable changes | Sep 7 2018 | |||
142711bf3427 | Jochem | Forgot to remove append | Sep 7 2018 | |||
53eba428216e | Jochem | bug needs to be string | Sep 7 2018 | |||
531c52b5c6e1 | Jochem | Added option to force run and option to cut out the saved chunks before… | Sep 7 2018 | |||
8c5513d52bcc | Jochem | Estimate the impulse response length of the filter to improve calculation speed | Sep 7 2018 | |||
4dc9fe63cc83 | Jochem | Added equation for calculating size of nanocapillary and shrunken… | Sep 5 2018 | |||
b189ef23db0c | Jochem | Bugfix on Linux | Aug 29 2018 | |||
05af8394a4c4 | Jochem/Chimera_2nd | Implement changes to use Chimera non-raw IV data. Converted to SI units. | Aug 27 2018 | |||
8559e688e8a7 | Jochem | Added TraceAnalysis example script | Aug 17 2018 | |||
258189273e68 | Jochem/Axopatch | uncommented pyabf because I figured out how to install packages in Pycharm… | Aug 10 2018 | |||
f92e2943a971 | Axopatch | test | Aug 10 2018 | |||
2f2bafc18cf4 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Aug 7 2018 | |||
338200479f6d | Microtubulus <michael.graf> | Added Event Generator, for those that don't get events... | Aug 7 2018 | |||
52683b1c814c | Jochem | Merge branch 'master' of ssh://c4science.ch/diffusion/5484/nanopore-tools | Jul 31 2018 | |||
031e4b218b40 | Jochem | minor changes to Functions.py | Jul 31 2018 | |||
cdc7f3281cc4 | Microtubulus <michael.graf> | Standard Error of the mean for exponential fit. Needs to be changed also for… | Jul 26 2018 | |||
820e9a946792 | Microtubulus <michael.graf> | First ever commit of the most amazing collection of bug-free code... | Jul 20 2018 |
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