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smalladditions
History Graph
History Graph
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| c174859d5b62 | deen | Cleaning up of git | Dec 5 2018 | ||||
| d20e559ae01d | deen | Added check for length to not show error message if missing data | Dec 5 2018 | ||||
| acffb6d8ec58 | deen | Merge remote-tracking branch 'origin/master' | Dec 4 2018 | ||||
| ecfb78678b73 | deen | changed check to not 0 | Dec 4 2018 | ||||
| 65e4816bf5ea | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Nov 29 2018 | ||||
| fbf8f3beb1e9 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Nov 29 2018 | ||||
| 2bb51f0f8cee | thakur/Axopatch | Added log scale function | Nov 29 2018 | ||||
| 2ef35a200eac | thakur | merge | Nov 28 2018 | ||||
| ac1107061311 | thakur | -updated for csv files -semilog graphs | Nov 23 2018 | ||||
| 06756ab5ac7e | deen | Changed opening of abf files, current units appear to be in pA. | Nov 23 2018 | ||||
| 4debbda11487 | deen | bugfix for using default extension if none is specified. Added string with… | Nov 21 2018 | ||||
| cf08f7c66c2b | thakur | dated 20/11/2018 | Nov 20 2018 | ||||
| 4c63018c6ea0 | deen | minor bug | Nov 6 2018 | ||||
| d8f7aeba5740 | deen | Merge remote-tracking branch 'origin/master' | Nov 6 2018 | ||||
| 72d130d353ae | deen | Added verbose options to most load functions and event detection and IV making. | Nov 6 2018 | ||||
| 1deb5d5da264 | thakur/Axopatch | Corrected typo for lenght --> length | Oct 29 2018 | ||||
| 1b48a3ac0be4 | deen | Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for… | Oct 23 2018 | ||||
| dfe0ecb79611 | deen | fix | Oct 23 2018 | ||||
| d4e385f6328a | deen | Changed fit types. Added Standard error key (SE) that correctly captures the… | Oct 23 2018 | ||||
| aaef6f69371d | deen | Changed to Rough | Sep 26 2018 | ||||
| 52897e16647e | deen | Added voltage in plot | Sep 26 2018 | ||||
| b8b0a10ea649 | deen | Misspelling...... | Sep 26 2018 | ||||
| 0304f8d4c759 | deen | Bugfix, incorrectly estimating baseline | Sep 26 2018 | ||||
| 3661c2d7932e | deen | Added titlte | Sep 26 2018 | ||||
| 62be1090664b | deen | Minor bugfix for plotting if not fitted | Sep 26 2018 | ||||
| d7388e3b03c0 | deen | Bugfix for opening data | Sep 26 2018 | ||||
| 23cadb544365 | deen | fixed plotting of events when clicked. Added option to show original trace with… | Sep 26 2018 | ||||
| a8388ba67ded | deen | Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split… | Sep 26 2018 | ||||
| 933b5123747b | deen | Added interactive G-tau plot. Shows only CUSUM fitted events for now (with… | Sep 25 2018 | ||||
| 1f6786480d9e | deen | Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses. | Sep 25 2018 | ||||
| bde0ca0d1dab | deen | Changed saving of data | Sep 21 2018 | ||||
| c792e13c699c | Microtubulus <michael.graf> | no message | Sep 21 2018 | ||||
| 2a8396bb4a6d | deen | Implement CUSUM in event detection | Sep 21 2018 | ||||
| 38d9c4366802 | deen | Fixed CUSUM function | Sep 21 2018 | ||||
| c3550ed6e891 | deen | move to directory | Sep 21 2018 | ||||
| b3c62d386c00 | deen | Revert "Change directory for making IV" | Sep 21 2018 | ||||
| 3b3cb8f58ddd | deen | Merge remote-tracking branch 'origin/master' | Sep 21 2018 | ||||
| 2e1d4a0e578d | deen | Change directory for making IV | Sep 21 2018 | ||||
| 30bc3a694243 | deen | Merge remote-tracking branch 'origin/master' | Sep 20 2018 | ||||
| 5f63cce9e6e9 | deen | added delay variable | Sep 20 2018 | ||||
| 29927513e285 | deen | Merge remote-tracking branch 'origin/master' | Sep 12 2018 | ||||
| 451b6c50e0b3 | deen | make type of coefficient all | Sep 12 2018 | ||||
| 2a248ed4f722 | deen | Added option for lowpass | Sep 12 2018 | ||||
| d88f1af316db | deen | Implemented CUSUM | Sep 12 2018 | ||||
| abf170dbe284 | Microtubulus <michael.graf> | Added Capacitance Measurement Code: CapacitanceCalc.py | Sep 11 2018 | ||||
| bbda3fc18b16 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Sep 10 2018 | ||||
| e6a5c296a5e1 | Microtubulus <michael.graf> | osmotixvsconcdifference | Sep 10 2018 | ||||
| 06472a371340 | Microtubulus <michael.graf> | Redox | Sep 10 2018 | ||||
| 0f999a824045 | deen | Added option to save as CSV | Sep 10 2018 | ||||
| 6175240322bf | deen | Check if directory for saving exists, otherwise make it | Sep 7 2018 | ||||
| d9ad6bb5c745 | deen | variable changes | Sep 7 2018 | ||||
| 142711bf3427 | Jochem | Forgot to remove append | Sep 7 2018 | ||||
| 53eba428216e | Jochem | bug needs to be string | Sep 7 2018 | ||||
| c586f9ef2da1 | Jochem | Assertion bug, changed layout | Sep 7 2018 | ||||
| 531c52b5c6e1 | Jochem | Added option to force run and option to cut out the saved chunks before… | Sep 7 2018 | ||||
| 8c5513d52bcc | Jochem | Estimate the impulse response length of the filter to improve calculation speed | Sep 7 2018 | ||||
| 401a6116ee17 | Chimera_2nd | Merge remote-tracking branch 'origin/master' | Sep 7 2018 | ||||
| 671b9a4959da | Chimera_2nd | Can load Chimera files as well now | Sep 7 2018 | ||||
| 2fb6a1c505c2 | Jochem | Added option to skip fitting if the batchevents has already been done with the… | Sep 6 2018 | ||||
| 84359bf20bde | Jochem | Changed filename of EventDetection. Added possibility to directly run… | Sep 6 2018 | ||||
| 44d1d2696158 | Jochem | Merge remote-tracking branch 'origin/master' | Sep 5 2018 | ||||
| 4dc9fe63cc83 | Jochem | Added equation for calculating size of nanocapillary and shrunken… | Sep 5 2018 | ||||
| 632f91e3cc93 | thakur | updated 2D plotting script with help of Jochem | Aug 29 2018 | ||||
| ee0c6e9047ce | Jochem | Fix for Mukesh | Aug 29 2018 | ||||
| f1841c21414e | thakur | Merge remote-tracking branch 'origin/master' | Aug 29 2018 | ||||
| 81f6de7bbb0f | thakur | just checking dont bother | Aug 29 2018 | ||||
| 6c8c5ceac278 | Jochem | Added comments for Mukesh | Aug 29 2018 | ||||
| ccf851a2f6d0 | Jochem | Minor changes | Aug 29 2018 | ||||
| 7e569bbb88d0 | Jochem | Plot events function inside the class. Formatted axis and plotted baseline and… | Aug 29 2018 | ||||
| b189ef23db0c | Jochem | Bugfix on Linux | Aug 29 2018 | ||||
| c5b86890e965 | Jochem | linked baseline to trace and option to load events | Aug 29 2018 | ||||
| 4201830c1e25 | Jochem | Proper axis formatting. | Aug 29 2018 | ||||
| 9fe532e46cdb | Jochem | Linked PlotI_Tau axes. Fixed minor bug in background traces | Aug 29 2018 | ||||
| 1485f00e2850 | Jochem | fixed bug in detection of traces, and implemented minimal time (100) | Aug 28 2018 | ||||
| 068e0fffdbda | Jochem | Resolved conflicts | Aug 28 2018 | ||||
| 50b29ee1df0d | Jochem | flipped current drop and minor changes in plotting | Aug 28 2018 | ||||
| 05af8394a4c4 | Jochem/Chimera_2nd | Implement changes to use Chimera non-raw IV data. Converted to SI units. | Aug 27 2018 | ||||
| 8c4db3437563 | thakur | check | Aug 21 2018 | ||||
| 5ad52fea305a | thakur | check | Aug 21 2018 | ||||
| 8f67112dacf4 | thakur | Did follwoing things:- 1. Added color and marker function to improve aesthetics… | Aug 20 2018 | ||||
| 5a36682c2386 | thakur | I made a basic 2D plotting graph from excel (example is one of our Raman… | Aug 19 2018 | ||||
| 3d5d95261315 | thakur | Merge remote-tracking branch 'origin/master' | Aug 17 2018 | ||||
| 61bf8183c0d0 | thakur | minor bugfix in case current is nan | Aug 17 2018 | ||||
| 59fd72e1c808 | Jochem | added Plotting formatter | Aug 17 2018 | ||||
| 260d476fcf76 | thakur | added dialog | Aug 17 2018 | ||||
| 8559e688e8a7 | Jochem | Added TraceAnalysis example script | Aug 17 2018 | ||||
| b69207051934 | grafm/Axopatch | Made Useless changes to IV plotting | Aug 14 2018 | ||||
| c1e4aa2bd87b | Jochem/Axopatch | added plotgui because microtubulus forgot | Aug 10 2018 | ||||
| 258189273e68 | Jochem/Axopatch | uncommented pyabf because I figured out how to install packages in Pycharm… | Aug 10 2018 | ||||
| f92e2943a971 | Axopatch | test | Aug 10 2018 | ||||
| 2a8a16bd6b21 | grafm | change folder after selecting | Aug 10 2018 | ||||
| ebc07c86d287 | grafm | cosmetic change | Aug 10 2018 | ||||
| a66c8afebb9c | grafm | fix in units | Aug 10 2018 | ||||
| ee35d4c603ea | grafm | Added OpenFilenames dialog Show plot before deleting, minor change in display… | Aug 10 2018 | ||||
| f69f8d823de6 | thakur | check | Aug 7 2018 | ||||
| 2f2bafc18cf4 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Aug 7 2018 | ||||
| 338200479f6d | Microtubulus <michael.graf> | Added Event Generator, for those that don't get events... | Aug 7 2018 | ||||
| 52683b1c814c | Jochem | Merge branch 'master' of ssh://c4science.ch/diffusion/5484/nanopore-tools | Jul 31 2018 | ||||
| 031e4b218b40 | Jochem | minor changes to Functions.py | Jul 31 2018 | ||||
| 31eb273b9a5b | Jochem | Basic EventDetection functions, Classes for event detection and plotting… | Jul 31 2018 |
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