Diffusion Nanopore Tools (master) History

Nanopore-tools/EventDetection.py
mastere1fb93801dfbe2c501f57f5…

Jun 14 2019

latest
992748feefcd
·Microtubulus <michael.graf> on Jun 14 2019, 11:19.

Jun 13 2019

Event detector is now running on the selected files. All the files have a…
8574c2881649
·Microtubulus <michael.graf> on Jun 13 2019, 17:07.

Jun 11 2019

Added relative delta for CUSUM fitting
f0ed91619c81
·deen on Jun 11 2019, 14:07.
Added more printing for debugging
5708b27f21a2
·deen on Jun 11 2019, 11:36.
Changed type of CUSUM fitted events to 'CUSUM'
96d8adf9e29d
·deen on Jun 11 2019, 09:39.
CUSUM needs at least 2 levels, not 3
0456ec9b066d
·deen on Jun 11 2019, 09:34.
Reorganized so event adding is more clear
6546e6f62eaa
·deen on Jun 11 2019, 09:32.
modified printing
1c05b36cc2be
·deen on Jun 11 2019, 09:27.
Minor changes in printing
46a6544c0236
·deen on Jun 11 2019, 09:17.
modified verboseLevel and added check for integer
5ffc7919fc39
·deen on Jun 11 2019, 09:02.
bugfix
c21afa3fedea
·deen on Jun 11 2019, 08:58.
modified check
f65c960d7cdc
·deen on Jun 11 2019, 08:57.
Modified coefficients
7dfe94a20c40
·deen on Jun 11 2019, 08:50.

Jun 7 2019

Modified detection of events, added option to fit traces with function and use…
ebb436057178
·deen on Jun 7 2019, 17:59.

Mar 13 2019

Fixed capital letter
f965f55c4d5c
·Axopatch on Mar 13 2019, 18:19.

Jan 27 2019

more docstrings
321317e9b140
·schneuwly on Jan 27 2019, 22:36.

Jan 24 2019

added docstrings to document some functions
978ab3ff6e83
·schneuwly on Jan 24 2019, 00:20.

Dec 11 2018

Added function GetParameters() to see default parameters Changed…
c6b661d2d480
·Axopatch on Dec 11 2018, 10:08.

Dec 5 2018

Moved Loading data functions to new script, for easier access. Moved unused…
f6dac0696a44
·deen on Dec 5 2018, 10:47.
Cleaning up of git
c174859d5b62
·deen on Dec 5 2018, 10:28.

Nov 21 2018

bugfix for using default extension if none is specified. Added string with…
4debbda11487
·deen on Nov 21 2018, 13:20.

Nov 6 2018

Added verbose options to most load functions and event detection and IV making.
72d130d353ae
·deen on Nov 6 2018, 15:37.

Oct 23 2018

Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for…
1b48a3ac0be4
·deen on Oct 23 2018, 16:13.

Sep 25 2018

Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses.
1f6786480d9e
·deen on Sep 25 2018, 16:40.

Sep 21 2018

Changed saving of data
bde0ca0d1dab
·deen on Sep 21 2018, 16:09.
Implement CUSUM in event detection
2a8396bb4a6d
·deen on Sep 21 2018, 13:02.

Sep 12 2018

make type of coefficient all
451b6c50e0b3
·deen on Sep 12 2018, 15:16.
Added option for lowpass
2a248ed4f722
·branch: CUSUM
·deen on Sep 12 2018, 15:07.
Implemented CUSUM
d88f1af316db
·deen on Sep 12 2018, 11:20.

Sep 7 2018

Assertion bug, changed layout
c586f9ef2da1
·Jochem on Sep 7 2018, 13:27.
Added option to force run and option to cut out the saved chunks before…
531c52b5c6e1
·Jochem on Sep 7 2018, 13:20.
Estimate the impulse response length of the filter to improve calculation speed
8c5513d52bcc
·Jochem on Sep 7 2018, 11:28.

Sep 6 2018

Added option to skip fitting if the batchevents has already been done with the…
2fb6a1c505c2
·Jochem on Sep 6 2018, 13:42.
Changed filename of EventDetection. Added possibility to directly run…
84359bf20bde
·Jochem on Sep 6 2018, 13:15.