Diffusion Nanopore Tools (master) History

Nanopore-tools/Plotting
master3bc077ccfde7ca127851cb5…

Jul 8 2022

update
3bc077ccfde7
·branch: master
·thakur on Jul 8 2022, 16:40.

Mar 18 2021

Update: normalizing traces for comparison
270d85039163
·thakur on Mar 18 2021, 14:47.

Feb 12 2021

For plotting multiple IVs from Axopatch data
bda10eb895f3
·thakur on Feb 12 2021, 17:25.
Fitting and cleaning options added
a4b7f472c742
·thakur on Feb 12 2021, 17:24.

Aug 20 2020

add lowpass to getdata
c2870d6b9230
·deen on Aug 20 2020, 09:47.

Jun 9 2020

Added more plotting features: voltage-time, conductance-time, and current-time…
f218b5a0f5a3
·thakur on Jun 9 2020, 09:17.

Feb 28 2020

Extracts a part of trace from a raw file
2d43f21d943d
·thakur on Feb 28 2020, 15:54.
Extracts a part of trace from a raw file
223556b72fdc
·thakur on Feb 28 2020, 15:49.

Dec 23 2019

Added changes to load OPT files from Axopatch (Manunu lab)
9d5adb07ce5b
·deen on Dec 23 2019, 12:57.

Nov 12 2019

forgot to change variable to variable_
35975138e060
·deen on Nov 12 2019, 14:22.
Modified Plotting, should show legend now
f233aca7ab9e
·deen on Nov 12 2019, 14:21.
Added print saving
c1e5ccac9bf8
·deen on Nov 12 2019, 14:05.
Changed histogram color to fill_color
fb841ce0f885
·deen on Nov 12 2019, 13:36.
Moved old PlotGTauVoltage to EventPlotsOld.py Added new function to save…
086bb13045e3
·deen on Nov 12 2019, 13:05.
Changed colors of histogram plot
879b0c898299
·deen on Nov 12 2019, 11:04.

Nov 11 2019

Modified GetAllvoltages, the list is sorted and converted to a list, rather…
aed240124e06
·deen on Nov 11 2019, 14:50.

Oct 30 2019

Minor fixes. Didn't show IV plot. Incorrect ylabel PlotGTau
b6f82fe2cc56
·deen on Oct 30 2019, 14:28.

Sep 24 2019

Fixed normalization....
7ee1a7bfbad8
·deen on Sep 24 2019, 17:10.
incorrect sign........
ccc4633b3b86
·deen on Sep 24 2019, 16:37.
Bugfix when no values in x and y while plotting log histogram
132c8862bede
·deen on Sep 24 2019, 16:31.
Added log option for histogram
4978d2d2bd4a
·deen on Sep 24 2019, 15:24.
Added showNonFitted to PlotGTau
cfa8ffed678c
·deen on Sep 24 2019, 14:10.
Fixed Lowpass of current trace
752d85005b4c
·deen on Sep 24 2019, 14:06.
Added LowPassAndResample
dc1255d0a2c8
·deen on Sep 24 2019, 13:57.

Sep 18 2019

Add voltagelimits
c0215aaf1eb6
·thakur on Sep 18 2019, 10:43.
bugfix
80b74d7635bd
·thakur on Sep 18 2019, 10:39.
convert rgb color to hex colors
9365ab63dee7
·thakur on Sep 18 2019, 10:27.
Changed colors to seaborn color_palette, number of colors = number of voltages
9b26f9c5b852
·deen / thakur on Sep 18 2019, 10:20.

Sep 12 2019

changed SaveG to SavePlot
2e077d9d90d8
·thakur on Sep 12 2019, 14:57.

Aug 7 2019

added return value
4ce46a6e6ab2
·deen on Aug 7 2019, 11:48.
quick fix
9eba0a7d13c9
·deen on Aug 7 2019, 11:46.
space
5873b18544cf
·deen on Aug 7 2019, 11:43.
fix
34e59e08e093
·deen on Aug 7 2019, 11:40.

Aug 6 2019

Added holoviews histogram plotting
72bad964fbed
·deen on Aug 6 2019, 12:11.

Jul 23 2019

x-axis log
b28ac35dd7e5
·deen on Jul 23 2019, 13:44.
Changed to check for string
1c201b3100e9
·deen on Jul 23 2019, 13:43.
Bugfix
b00190c1d228
·deen on Jul 23 2019, 13:32.
PSD plotting
81286bc0be01
·deen on Jul 23 2019, 13:18.

Jun 12 2019

Moved sorting
62e380e32bf3
·deen on Jun 12 2019, 16:19.
Minor cosmetic changes
6b675b7de877
·deen on Jun 12 2019, 16:10.
Minor changes for plotting Bokeh in Jupyter
3b8380e96bc8
·deen on Jun 12 2019, 15:10.
sort Voltages
e377aa3ddf2c
·deen on Jun 12 2019, 14:58.
changed variable name
aeb2d8e44532
·deen on Jun 12 2019, 14:57.
disabled nonfitted events by default
90792c965edb
·deen on Jun 12 2019, 11:11.

Jun 11 2019

Plotting with Currentdrop
3b21f3fa5b7a
·deen on Jun 11 2019, 11:26.
Added line in EventPlots for plotting in Jupyter Notebook
0a68ff931638
·deen on Jun 11 2019, 09:40.

Apr 26 2019

amazing edits and voltage based plotting by Jochem
f3ada36a22f3
·deen / thakur on Apr 26 2019, 17:28.

Apr 2 2019

Added lines for plotting on Mac OS X
58aa40228148
·thakur on Apr 2 2019, 17:37.

Mar 22 2019

import Range1D
47a96ece775c
·deen on Mar 22 2019, 16:54.
xlim and ylim on figure
bac909099f2c
·deen on Mar 22 2019, 16:48.
added limits to the function
60231057e4c9
·deen on Mar 22 2019, 15:35.

Mar 13 2019

bugfix
b312fafccb7f
·deen on Mar 13 2019, 17:54.
Open multiple files
930e44a351de
·Axopatch on Mar 13 2019, 17:22.

Feb 25 2019

Slight modification
819291dbdcac
·Axopatch on Feb 25 2019, 12:46.

Jan 28 2019

Merge remote-tracking branch 'origin/master'
32cc2a9272f4
·Axopatch on Jan 28 2019, 16:09.
for PSDs
d37dbe352a43
·Axopatch on Jan 28 2019, 16:08.

Jan 27 2019

more docstrings
321317e9b140
·schneuwly on Jan 27 2019, 22:36.

Jan 16 2019

Simplified version of GTau plot using Bokeh
475f5761a285
·deen on Jan 16 2019, 10:35.

Jan 14 2019

Added PSF plotting function
ac035c18794d
·deen on Jan 14 2019, 17:17.

Dec 12 2018

Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows…
4992f8975ef8
·deen on Dec 12 2018, 20:37.
absolute value of tick
2ba93daf2eed
·Axopatch on Dec 12 2018, 15:46.

Dec 11 2018

Added function GetParameters() to see default parameters Changed…
c6b661d2d480
·Axopatch on Dec 11 2018, 10:08.

Dec 6 2018

added back plotgui.py
3e9d528dfa0a
·deen on Dec 6 2018, 14:08.

Dec 5 2018

Removed cutting of FullTrace
4e1051e88fcb
·deen on Dec 5 2018, 18:47.
Implemented plotting in Bokeh
42aa378d194c
·deen on Dec 5 2018, 15:00.
Added Plotting function for simple trace plot
ce6047fe7825
·deen on Dec 5 2018, 13:14.
Moved Loading data functions to new script, for easier access. Moved unused…
f6dac0696a44
·deen on Dec 5 2018, 10:47.
Cleaning up of git
c174859d5b62
·deen on Dec 5 2018, 10:28.

Dec 4 2018

Merge remote-tracking branch 'origin/master'
acffb6d8ec58
·deen on Dec 4 2018, 16:26.
changed check to not 0
ecfb78678b73
·deen on Dec 4 2018, 16:25.

Nov 29 2018

Added log scale function
2bb51f0f8cee
·thakur / Axopatch on Nov 29 2018, 11:51.

Nov 6 2018

Added verbose options to most load functions and event detection and IV making.
72d130d353ae
·deen on Nov 6 2018, 15:37.

Sep 26 2018

Added voltage in plot
52897e16647e
·deen on Sep 26 2018, 14:43.
Added titlte
3661c2d7932e
·deen on Sep 26 2018, 14:02.
Minor bugfix for plotting if not fitted
62be1090664b
·deen on Sep 26 2018, 14:00.
Bugfix for opening data
d7388e3b03c0
·deen on Sep 26 2018, 13:09.
fixed plotting of events when clicked. Added option to show original trace with…
23cadb544365
·deen on Sep 26 2018, 11:35.
Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split…
a8388ba67ded
·deen on Sep 26 2018, 09:42.

Sep 25 2018

Added interactive G-tau plot. Shows only CUSUM fitted events for now (with…
933b5123747b
·deen on Sep 25 2018, 17:19.

Aug 29 2018

Proper axis formatting.
4201830c1e25
·Jochem on Aug 29 2018, 16:41.
Linked PlotI_Tau axes. Fixed minor bug in background traces
9fe532e46cdb
·Jochem on Aug 29 2018, 13:45.

Aug 28 2018

Resolved conflicts
068e0fffdbda
·Jochem on Aug 28 2018, 07:56.
flipped current drop and minor changes in plotting
50b29ee1df0d
·Jochem on Aug 28 2018, 07:38.

Aug 21 2018

check
8c4db3437563
·thakur on Aug 21 2018, 00:48.
check
5ad52fea305a
·thakur on Aug 21 2018, 00:29.

Aug 20 2018

Did follwoing things:- 1. Added color and marker function to improve aesthetics…
8f67112dacf4
·thakur on Aug 20 2018, 23:33.

Aug 17 2018

Merge remote-tracking branch 'origin/master'
3d5d95261315
·thakur on Aug 17 2018, 15:55.
minor bugfix in case current is nan
61bf8183c0d0
·thakur on Aug 17 2018, 15:55.
added Plotting formatter
59fd72e1c808
·Jochem on Aug 17 2018, 15:45.

Aug 14 2018

Made Useless changes to IV plotting
b69207051934
·grafm / Axopatch on Aug 14 2018, 16:17.

Aug 7 2018

Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools
2f2bafc18cf4
·Microtubulus <michael.graf> on Aug 7 2018, 17:08.
Added Event Generator, for those that don't get events...
338200479f6d
·Microtubulus <michael.graf> on Aug 7 2018, 17:07.

Jul 31 2018

Merge branch 'master' of ssh://c4science.ch/diffusion/5484/nanopore-tools
52683b1c814c
·Jochem on Jul 31 2018, 14:27.
Basic EventDetection functions, Classes for event detection and plotting…
31eb273b9a5b
·Jochem on Jul 31 2018, 14:26.

Jul 26 2018

Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools
e0388d3b9a7b
·Microtubulus <michael.graf> on Jul 26 2018, 10:00.

Jul 20 2018

Moved plotting files to new directory
6be965376176
·Jochem on Jul 20 2018, 17:07.

Nanopore-tools/Plottingmaster3bc077ccfde7ca127851cb5…

Jul 8 2022

Mar 18 2021

Feb 12 2021

Aug 20 2020

Jun 9 2020

Feb 28 2020

Dec 23 2019

Nov 12 2019

Nov 11 2019

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Jun 12 2019

Jun 11 2019

Apr 26 2019

Apr 2 2019

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Feb 25 2019

Jan 28 2019

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Dec 12 2018

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Nov 29 2018

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Sep 26 2018

Sep 25 2018

Aug 29 2018

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Jul 26 2018

Jul 20 2018

Nanopore-tools/Plotting
master3bc077ccfde7ca127851cb5…