Diffusion Nanopore Tools (smalladditions) History

Nanopore-tools/EventDetection.py
smalladditions06756ab5ac7e8b3b53a3099…

Nov 21 2018

bugfix for using default extension if none is specified. Added string with…
4debbda11487
·deen on Nov 21 2018, 13:20.

Nov 6 2018

Added verbose options to most load functions and event detection and IV making.
72d130d353ae
·deen on Nov 6 2018, 15:37.

Oct 23 2018

Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for…
1b48a3ac0be4
·deen on Oct 23 2018, 16:13.

Sep 25 2018

Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses.
1f6786480d9e
·deen on Sep 25 2018, 16:40.

Sep 21 2018

Changed saving of data
bde0ca0d1dab
·deen on Sep 21 2018, 16:09.
Implement CUSUM in event detection
2a8396bb4a6d
·deen on Sep 21 2018, 13:02.

Sep 12 2018

make type of coefficient all
451b6c50e0b3
·deen on Sep 12 2018, 15:16.
Added option for lowpass
2a248ed4f722
·branch: CUSUM
·deen on Sep 12 2018, 15:07.
Implemented CUSUM
d88f1af316db
·deen on Sep 12 2018, 11:20.

Sep 7 2018

Assertion bug, changed layout
c586f9ef2da1
·Jochem on Sep 7 2018, 13:27.
Added option to force run and option to cut out the saved chunks before…
531c52b5c6e1
·Jochem on Sep 7 2018, 13:20.
Estimate the impulse response length of the filter to improve calculation speed
8c5513d52bcc
·Jochem on Sep 7 2018, 11:28.

Sep 6 2018

Added option to skip fitting if the batchevents has already been done with the…
2fb6a1c505c2
·Jochem on Sep 6 2018, 13:42.
Changed filename of EventDetection. Added possibility to directly run…
84359bf20bde
·Jochem on Sep 6 2018, 13:15.