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Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (divided_output) Graph

gyacomo/src
divided_output

History Graph

CommitAuthorDetailsCommitted
59fa66532c42Ahoffmann
Added ZF initialization option 
May 17 2021
4a6a43b6c612Ahoffmann
renamed inital background and noise variables 
May 17 2021
1a41c14b0cd5Ahoffmann
Source flag to remove ei ie collision terms 
May 17 2021
20f2ab777d1eAhoffmann
Typo 
May 4 2021
46c819e0cb3dAhoffmann
simplification of the code 
Apr 23 2021
607caa60fa17Ahoffmann
COSOlver matrices are asked up to 2/3 kperpmax (since AA on larger k) 
Apr 23 2021
e7b01d2ad565Ahoffmann
diagnostic to have a cp at tf if no crash 
Apr 23 2021
0d368ce61695Ahoffmann
typo correction 
Apr 20 2021
3a8d34ffde9dAhoffmann
variable flag COMPUTE_ONLY_EVEN_P renamed 
Apr 20 2021
6474c3489b77Ahoffmann
typo 
Apr 20 2021
ccc455f2aed9Ahoffmann
changed the writing in advancing the moments 
Apr 20 2021
22e728b541f5Ahoffmann
terminal info to know restart time 
Apr 20 2021
72eb238244b3Ahoffmann
removing other closure methods, only truncation is available 
Apr 20 2021
7398d80ef1f5Ahoffmann
implicit, lighter writing of loops 
Apr 20 2021
d047f3366b4bAhoffmann
typo in Pi,Ji parameters writing 
Apr 19 2021
dcf46dd9e179Ahoffmann
removed debug outputs 
Apr 15 2021
c9f1103728f4Ahoffmann
Avoid calling MPI comm routines if only one proc in p 
Apr 15 2021
2837b818d3ffAhoffmann
Added a flag to know if the process has kr=0 data or not 
Apr 14 2021
65812b944391Ahoffmann
removed world_rank and world_size variables 
Apr 13 2021
8014eafcf31dAhoffmann
typo 
Apr 13 2021
0d926a200cfcAhoffmann
Update intrinsic comput. time profiler 
Apr 13 2021
956e78c3dab9Ahoffmann
cleaning 
Apr 13 2021
e5be3acc0e29Ahoffmann
comments and correction of Sapj computed before dnjs 
Apr 13 2021
402b540ead7eAhoffmann
Changed the order in do to have all fields updated at end of step 
Apr 13 2021
ec6703038b27Ahoffmann
SUgama operator implementation 
Apr 13 2021
c7fa939998c0Ahoffmann
naming change of comm_r to comm_kr 
Apr 12 2021
9573a9db3bdeAhoffmann
naming change of comm_r to comm_kr 
Apr 12 2021
3703264f4929Ahoffmann
renaming of variables 
Apr 1 2021
54c0213dedbcAhoffmann
GK Cosolver update and collision routines 
Apr 1 2021
a5eb6ee58d19Ahoffmann
New parameter to control the non linear sum truncations 
Apr 1 2021
fb5e50f8993cAhoffmann
Adding processing directly in the code in order to reduce output 
Mar 18 2021
103674a8b230Ahoffmann
no 5D output at t=0 
Mar 16 2021
3bc306413732Ahoffmann
organized better time measurement 
Mar 16 2021
d37a83fd8569Ahoffmann
removed Sapj output 
Mar 16 2021
6015df684365Ahoffmann
add num proc p and kr in hdf5 
Mar 16 2021
fd805cf83a36Ahoffmann
Change the output organization, grid is now written once 
Mar 15 2021
71102757537bAhoffmann
Put all the advance fields in a routine for clarity in the time loop 
Mar 15 2021
2fdcd01a63ebAhoffmann
restart functions to load a state from an older sim 
Mar 15 2021
6e62367cb401Ahoffmann
typo in the sign 
Mar 15 2021
56e0b1bf214fAhoffmann
Allocation of Na00 arrays for diagnostics in 2D parallel 
Mar 15 2021
5ebc1b03d646Ahoffmann
Replaced only Na00 start option with phi start option 
Mar 15 2021
39cf2ca15e7eAhoffmann
Initialization on phi only is now possible, restart functions are moved 
Mar 15 2021
b6c9fd757683Ahoffmann
2D parallel distribution 
Mar 15 2021
f85f7606acc0Ahoffmann
Update ghosts cells exchange for parallel 2D 
Mar 15 2021
639ccdd11e81Ahoffmann
Change of communication mean for 2D parallel 
Mar 15 2021
4d49927500deAhoffmann
Adapted for 2D data distribution on p and kr 
Mar 15 2021
62d467fd7b40Ahoffmann
comment 
Mar 15 2021
629a0a276e4aAhoffmann
Option to skip p=odd computation since odds are 0. + typo 
Mar 15 2021
5ed2781da4feAhoffmann
Corrections of Dougherty operator 
Mar 15 2021
690e56402ef4Ahoffmann
Broadcast from rank_p 0 to all other p processes for phi computation 
Mar 15 2021
2799bb019144Ahoffmann
Adaptation for 2D parallel runs with mpi along p and kr 
Mar 15 2021
bd7c9676eebcAhoffmann
added output of the parallel setup in terminal 
Mar 15 2021
ccd109dfc729Ahoffmann
New field to write 00 moments in parallel through gathering 
Mar 15 2021
dc0bae856e8bAhoffmann
Imaginary unit was not written in double precision 
Mar 15 2021
503fa0fa9f96Ahoffmann
start of parallel along p 
Mar 3 2021
4aa43bbb59a6Ahoffmann
bug fixed in restarting sim 
Feb 23 2021
018142a60b27Ahoffmann
Kinetic hyperdiffusion is added 
Feb 22 2021
991ed5bb1c22Ahoffmann
comments 
Feb 22 2021
ccdc151349baAhoffmann
removed unused p_damped j_damped 
Feb 19 2021
5e7f506d8d49Ahoffmann
removed unused p_damped j_damped 
Feb 19 2021
d9db1695730eAhoffmann
started kinetic hyperdiffusivity 
Feb 19 2021
298107696b56Ahoffmann
Bug solved on ghost PJ values 
Feb 19 2021
637b4a794827Ahoffmann
minor changes 
Feb 19 2021
ee6a8760a3efAhoffmann
added parameters for kinetic hyperdiffusion 
Feb 19 2021
784baff12d6dAhoffmann
Checkpoint loading are done on output file now, bug in write 5D corrected 
Feb 19 2021
8e16d3b4f32cAhoffmann
minor changes 
Feb 19 2021
3deffddb4b8aAhoffmann
added copy closure and started semi collisional closure 
Feb 19 2021
8b0e1eed463eAhoffmann
typo 
Feb 12 2021
20f0096c6b30Ahoffmann
correction on Napj diagnostic 
Feb 12 2021
c01895f0ca25Ahoffmann
typo on crashed variable 
Feb 1 2021
de2eb44013a7Ahoffmann
cp at end of sim only if not crashed simulation 
Feb 1 2021
e06013d45143Ahoffmann
Added simulation end checkpoint 
Feb 1 2021
1ac9de43ef0fAhoffmann
closure and kernel model flags 
Jan 15 2021
b82803a09f19Ahoffmann
moments boundaries are extended for closure 
Jan 15 2021
4521ba30593dAhoffmann
Kernel and closure are put away from rhs 
Jan 15 2021
ca643c9bac92Ahoffmann
One can continue simulation with different PJ now 
Jan 15 2021
5437ed07bcaaAhoffmann
closure mod adaptation 
Jan 15 2021
977cd88ed3b8Ahoffmann
module for different closure model 
Jan 15 2021
bf9d0b0f34e4Ahoffmann
Put DK Full Coulomb CO in collision mode as a routine 
Jan 13 2021
8fe6558f23e1Ahoffmann
comments 
Jan 12 2021
5a9a047c007bAhoffmann
cleaning 
Jan 12 2021
5a4c7c3cef78Ahoffmann
Split moment_eq_rhs in two routines (i,e) 
Jan 12 2021
bb9d57674ec6Ahoffmann
GK dougherty is added 
Jan 12 2021
17aae9e64a04Ahoffmann
moved precomputed factors from stepon routines to model 
Jan 12 2021
9bea36bdb7f8Ahoffmann
Start writing collision operator in a separated module 
Jan 12 2021
2293a9c3b745Ahoffmann
more output for initialization 
Jan 11 2021
93124e150641Ahoffmann
Use precomputed Kernel and closed truncation at Jmax 
Jan 11 2021
5048603059f1Ahoffmann
Kernel precomputation 
Jan 11 2021
7d0311467057Ahoffmann
minor changes 
Jan 11 2021
5c727b907e8aAhoffmann
Debugging 1D linear 
Jan 11 2021
c3598dd51b12Ahoffmann
AA modification in Convolution_2D (unused) 
Jan 11 2021
40f1c5fdc83eAhoffmann
One big FC file is now sufficient to load FC mat 
Jan 11 2021
e0c629f83f22Ahoffmann
Debugging 1D linear simulations 
Jan 11 2021
9db4099151a2Ahoffmann
anticipated kernel evaluation 
Jan 8 2021
fd6474e8eeebAhoffmann
delete redundancy 
Jan 8 2021
6a35ad177752Ahoffmann
AA changed and collision organisation 
Jan 8 2021
89bbd38a7116Ahoffmann
unused 
Jan 8 2021
d13bdf7310d1Ahoffmann
slight output change 
Jan 5 2021
cca109703c19Ahoffmann
Prevent bad ikzs ikze allocation for last process id 
Jan 5 2021
9057de439c4aAhoffmann
Use a MPI_ALLREDUCE for exit condition 
Jan 4 2021
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