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Diffusion Fourier Ring Correlation Plugin (master)

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Making use of the Fourier Ring Correlation Implementation by Alex Herbert
which is itself 'adapted from the FIRE (Fourier Image REsolution) plugin produced as part of the paper
Niewenhuizen, et al (2013). Measuring image resolution in optical nanoscopy. Nature Methods, 10, 557
http://www.nature.com/nmeth/journal/v10/n6/full/nmeth.2448.html

Fourier Ring Correlation Plugin (master)

.gitignore
README.md
pom.xml
src/

Recent Commits

CommitAuthorDetailsCommitted
5ec478385ba5• lacan
fixes bug in normalization of FRC curve computation 
Jun 4 2019
999e8cd37db9• lacan
changes gitignore to include .idea folder 
Jun 4 2019
498eb1d6b138• lacan
adds issue management 
Jun 3 2019
2f0607e489aa• lacan
bumps patch version 
Jun 3 2019
0a19f0b63be2• lacan
updates contributor list 
Jun 3 2019
cd5fb0e0d128• lacan
changes denominator FRC calcualtion 
Jun 3 2019
a47d54e6db7e• lacan
bumps org.scijava version 
Jun 3 2019
b301098b455coburri
fixes a bug where a constant was incorrect. 
Jul 10 2018
353b144e59d7oburri
adds bugfixes and pom version bump 
Jul 8 2018
363333213c93oburri
Merge branch 'master' of https://c4science.ch/diffusion/988/ijp-frc.git 
Sep 15 2016
79d9ad8df970oburri
More changes to License 
Sep 15 2016
ee36c74b2c2eoburri
More changes to License 
Sep 15 2016
ede99a8ea514oburri
Updated README and License 
Sep 15 2016
9f77b1113f19oburri
More code comments and minor edits 
Sep 15 2016
632d2cc71433oburri
License information and minor bugfixes 
Sep 14 2016

README.md

Fourier Ring Correlation ImageJ Plugin

Making use of the Fourier Ring Correlation Implementation by Alex Herbert which is itself 'adapted from the FIRE (Fourier Image REsolution) plugin produced as part of the paper Niewenhuizen, et al (2013). Measuring image resolution in optical nanoscopy. Nature Methods, 10, 557

http://www.nature.com/nmeth/journal/v10/n6/full/nmeth.2448.html

It is implemented as an Eclipse Plugin, with Maven dependencies for ImageJ/Fiji.

Maintained by Olivier Burri at the BioImaging and Optics Platform (BIOP) http://biop.epfl.ch

Installation

Please refer to the instructions on the Wiki page of the plugin, at http://imagej.net/Fourier_Ring_Correlation_Plugin#Installation

Source Code

Our institution is testing a platform called C4Science, where this file is hosted. Simply use the *clone url* that is provided above. The simplest way is to use e2git for Eclipse and use *Check out Maven project from SCM* from Eclipse's Import menu

Todo

Feel free to let us know if more functionality should be added. Perhaps implement the Fourier Shell Correlation for 3D data.

Using the Plugin

You need two images open, the plugin will prompt for the Threshold method to use and will provide the FIRE number as a Results Table and display the FRC curve in a new Plot window.

Batch Mode

You need two folders where each folder has files with the same filenames. The plugin will open each pair of files and run the FRC Calculation on them. It can save the FRC Curve as an image.

License

Copyright (C) 2016 Alex Herbert, Olivier Burri

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

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