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History Graph
Commit | Author | Details | Committed | ||||
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0d0c2b65f763 | Axel Kohlmeyer | correct stan's email address | Mar 20 2017 | ||||
2218a9d704dc | Axel Kohlmeyer | emphasize that the online manual is following the latest development version | Mar 20 2017 | ||||
0a6b33cd78a6 | Axel Kohlmeyer | remove duplicate paragraph in nose-hoover fix docs | Mar 20 2017 | ||||
ecf17621aa80 | Axel Kohlmeyer | more permission fixes | Mar 20 2017 | ||||
f0c6ed004dd0 | Axel Kohlmeyer | remove xmovie | Mar 20 2017 | ||||
554531a302d7 | Axel Kohlmeyer | update permissions | Mar 20 2017 | ||||
d496c0fdfa9f | sjplimp/GitHub | Merge pull request #426 from dstelter92/master | Mar 20 2017 | ||||
5c39dfd74089 | dstelter92 | re-ran example with fixed exchanges | Mar 20 2017 | ||||
5b842f0010a7 | dstelter92 | Teff and exchange bugfix, as per Greg Dignon to match python examples | Mar 20 2017 | ||||
4a90bca7a3b4 | Steve Plimpton | patch 17Mar17 | Mar 17 2017 | ||||
9f35b764f8cc | sjplimp/GitHub | Merge pull request #424 from timattox/dpd_restart_fix | Mar 17 2017 | ||||
7ca5dce2f56c | sjplimp/GitHub | Merge pull request #423 from timattox/master_bugfix_irregular | Mar 17 2017 | ||||
fcc3b3bd365d | sjplimp/GitHub | Merge pull request #421 from akohlmey/memory-output | Mar 17 2017 | ||||
53a3877c3d3e | sjplimp/GitHub | Merge pull request #420 from rbberger/doc_anchor_check | Mar 17 2017 | ||||
a936b7b2ab27 | sjplimp/GitHub | Merge pull request #419 from rbberger/python_fixes | Mar 17 2017 | ||||
a91b851f3d40 | sjplimp/GitHub | Merge pull request #416 from lukin17/filter_corotate | Mar 17 2017 | ||||
d31c591b60f7 | Stan Moore | Remove unneeded restart_peratom flags | Mar 17 2017 | ||||
ae5ebf600189 | Axel Kohlmeyer | add support for MPI_Request_free() to MPI STUBS library | Mar 17 2017 | ||||
7fb741d53da8 | Axel Kohlmeyer | Revert "In irregular.cpp use simpler and slightly faster… | Mar 17 2017 | ||||
8e75616c144d | Tim Mattox | In irregular.cpp use simpler and slightly faster MPI_Reduce_scatter_block() | Mar 17 2017 | ||||
411c069ba66f | Tim Mattox | BUGFIX: Prevent possible deadlock in Irregular::create_atom and create_data | Mar 17 2017 | ||||
ac82d041cc44 | Axel Kohlmeyer | ignore package pair style | Mar 17 2017 | ||||
621d7d5ce0f2 | Richard Berger | Correct off-by-one error in line number reported | Mar 17 2017 | ||||
1bb9c7da42e5 | Richard Berger | Remove some duplicate anchors in documentation | Mar 17 2017 | ||||
f893104b18d1 | Richard Berger | Add anchor_check to doc Makefile | Mar 17 2017 | ||||
efb2a942e046 | Richard Berger | Add utility to detect duplicate anchors in documentation files | Mar 17 2017 | ||||
070ce33a13df | Axel Kohlmeyer | improve memory usage reporting in info and output class | Mar 16 2017 | ||||
f604f86cfcd4 | Axel Kohlmeyer | add fix filter/corotate to some administrative files | Mar 16 2017 | ||||
bed288339e74 | Axel Kohlmeyer | simplify and shorten examples for fix filter/corotate and combine into a single… | Mar 16 2017 | ||||
1995f434f3d3 | Axel Kohlmeyer | fix some more code formatting issues, add newline at EOF | Mar 16 2017 | ||||
db0281b4df0b | Axel Kohlmeyer | Merge branch 'filter_corotate' of https://github.com/lukin17/lammps into pull… | Mar 16 2017 | ||||
2f5e711acd82 | lukin17 | Merge remote-tracking branch 'upstream/master' into filter_corotate | Mar 16 2017 | ||||
bdb7669e2742 | lukin17 | Fixed coding style. | Mar 16 2017 | ||||
cda821389250 | Richard Berger | Added Python matplotlib plot example | Mar 16 2017 | ||||
ef940d226c33 | Richard Berger | Improve Python 3 compatibility of pizza tools and simplify read_snapshot code | Mar 16 2017 | ||||
36da9223ec43 | Richard Berger | Fix dump cfg in vizplotgui_atomeye.py example | Mar 16 2017 | ||||
eb29ef32b1b9 | Richard Berger | Fix space/tab error in pizza/gl.py | Mar 16 2017 | ||||
29550d472d23 | Richard Berger | Fix dump cfg in viz_atomeye.py example | Mar 16 2017 | ||||
79cae51156ad | Richard Berger | Document property 'uses_exceptions' of Python interface | Mar 16 2017 | ||||
a210867025e1 | Richard Berger | Fixes lammps_create_atoms library function and its Python interface variant | Mar 16 2017 | ||||
0262a54ecfeb | Richard Berger | Fix Python 3 compatibility by encoding strings passed as c_char_p | Mar 16 2017 | ||||
0d8f74f0c52e | Axel Kohlmeyer | Merge branch 'filter_corotate' of https://github.com/lukin17/lammps into pull… | Mar 15 2017 | ||||
3a2da51a8210 | sjplimp/GitHub | Merge pull request #413 from ohenrich/user-cgdna | Mar 15 2017 | ||||
b1c59126f750 | sjplimp/GitHub | Merge pull request #415 from stanmoore1/kk_qeq | Mar 15 2017 | ||||
4c77838514d1 | sjplimp/GitHub | Merge pull request #414 from sstrong99/flow-gauss-doc-addition | Mar 15 2017 | ||||
f9468f46f577 | sjplimp/GitHub | Merge pull request #412 from timattox/master_typofix | Mar 15 2017 | ||||
c3ce3747e049 | lukin17 | Added fix filter/corotate. | Mar 15 2017 | ||||
fdc390ad0548 | Stan Moore | Tweaking docs for Kokkos package | Mar 14 2017 | ||||
580f6b567b12 | Stan Moore | Add neigh/qeq option to Kokkos | Mar 14 2017 | ||||
27b1c33a1680 | Steven Strong | updated the NEMD discussion in the how-to documentation about flow/gauss | Mar 14 2017 | ||||
7a75cd111c3d | Oliver Henrich | Minor updates in documentation and setup tool, merge before upgrade to oxDNA2 | Mar 14 2017 | ||||
23b828793333 | Oliver Henrich | Updated documentation and simple setup tool | Mar 14 2017 | ||||
4cfe623bc17d | Tim Mattox | Correct a typo in the fix_halt.txt documentation. | Mar 11 2017 | ||||
f871ecdc67db | Steve Plimpton | change to RCB cuts in load-balancing commands, also a new option for fix halt | Mar 10 2017 | ||||
470353e32080 | sjplimp/GitHub | Merge pull request #408 from giacomofiorin/colvars-update-2017-03-10 | Mar 10 2017 | ||||
ffe02d20ca83 | sjplimp/GitHub | Merge pull request #406 from stanmoore1/kokkos_bugfix | Mar 10 2017 | ||||
f70752c18f8d | Giacomo Fiorin | Include PDF of Colvars doc missing in previous commit | Mar 10 2017 | ||||
07fcfd6d54a1 | sjplimp/GitHub | Merge pull request #405 from stanmoore1/ev_setup_kk | Mar 10 2017 | ||||
c97feafca6ac | sjplimp/GitHub | Merge pull request #407 from frobnitzem/master | Mar 10 2017 | ||||
b20d95d49548 | sjplimp/GitHub | Merge pull request #402 from timattox/USER-DPD_spelling | Mar 10 2017 | ||||
0b4adaa9e6a1 | Giacomo Fiorin | Backport typo fixes that were not previously pushed to the Colvars repository | Mar 10 2017 | ||||
5fe620663813 | Giacomo Fiorin | Update Colvars module to version 2017-03-10 | Mar 10 2017 | ||||
65964f3b31ea | David M. Rogers | Add error check to lammps_gather_atoms/lammps_scatter_atoms in library.cpp | Mar 9 2017 | ||||
b28b84d444a4 | Stan Moore | Fix half from full nlist issue with Kokkos | Mar 9 2017 | ||||
a001a5ceb0c4 | Stan Moore | Fixing memory overflow issue in comm_kokkos | Mar 9 2017 | ||||
2ef713ea1b49 | Axel Kohlmeyer | restore incorrect change due to spell checking in fix imd | Mar 8 2017 | ||||
1f6c1942b37e | Stan Moore | Disable allocation of per-atom arrays in ev_setup for Kokkos styles | Mar 8 2017 | ||||
683023d8203f | Stan Moore | Adding alloc flag to ev_setup | Mar 8 2017 | ||||
42d3a8f4982d | Tim Mattox | Fix spelling "correction" from 3a054d1a: iterations not interactions. :-) | Mar 7 2017 | ||||
79b005dc3d5f | Steve Plimpton | patch 7Mar17 | Mar 7 2017 | ||||
a2fa6ef4524c | sjplimp/GitHub | Merge pull request #393 from akohlmey/small-bugfixes | Mar 7 2017 | ||||
920641bbffbc | sjplimp/GitHub | Merge pull request #399 from rbberger/docs_spelling_fixes | Mar 7 2017 | ||||
c2aabdec229c | sjplimp/GitHub | Merge pull request #398 from stanmoore1/kokkos_changes | Mar 7 2017 | ||||
e4aa735a6809 | sjplimp/GitHub | Merge pull request #395 from timattox/USER-DPD_bugfix | Mar 7 2017 | ||||
4af6557568e7 | sjplimp/GitHub | Merge pull request #394 from jaapkroe/kolmogorov-crespi | Mar 7 2017 | ||||
0798885bdb2a | sjplimp/GitHub | Merge pull request #389 from akohlmey/update-agni-potential | Mar 7 2017 | ||||
020e75e7efff | sjplimp/GitHub | Merge pull request #386 from akohlmey/doc-consistentcy | Mar 7 2017 | ||||
d6866f1cfdd7 | sjplimp/GitHub | Merge pull request #376 from v0i0/airebo-bondorderLJ-fixes | Mar 7 2017 | ||||
efaa4c67109f | Steve Plimpton | new neigh_modify exclude option, other SNAP changes | Mar 7 2017 | ||||
08baaa9d8ede | Richard Berger | Fix more typos in tools | Mar 7 2017 | ||||
359af419a7ab | Richard Berger | Fix typo in python README | Mar 7 2017 | ||||
21be86c42393 | Richard Berger | Fix typos in txt2html | Mar 7 2017 | ||||
d6800405a518 | Richard Berger | Fix more typos in examples | Mar 7 2017 | ||||
3a054d1a82b2 | Richard Berger | Fix more typos in src files | Mar 7 2017 | ||||
007f3c66a033 | Richard Berger | Third batch of spelling fixes in manual | Mar 7 2017 | ||||
32708860a9fa | Richard Berger | Add remaining false positives | Mar 7 2017 | ||||
fc9eebb9367c | Richard Berger | Added spellcheck utility to documentation build | Mar 6 2017 | ||||
dd76ac5010ae | Richard Berger | Fix typos in tools folder | Mar 6 2017 | ||||
17486a9319f8 | Richard Berger | Convert USER/lb/polymer files to UNIX line endings and remove trailing… | Mar 6 2017 | ||||
778a79b8eef7 | Richard Berger | Fix typos in examples folder | Mar 6 2017 | ||||
7dd60f97377a | Richard Berger | Fix typos in src files | Mar 6 2017 | ||||
084d831bce01 | Richard Berger | Second batch of spelling fixes in manual | Mar 6 2017 | ||||
e261bef7bba7 | Richard Berger | Spelling fixes in source files | Mar 6 2017 | ||||
fd78486086d9 | Richard Berger | First batch of spelling fixes in manual | Mar 6 2017 | ||||
6382d3c89a2f | Stan Moore | Improving memory access in comm_kokkos | Mar 3 2017 | ||||
763a00e8b02e | Tim Mattox | USER-DPD: pair_multi_lucy_rx bugfix for systems with multiple atom types | Mar 3 2017 | ||||
ce1a3f25e193 | Axel Kohlmeyer | Merge branch 'pair_write_fix' of https://github.com/andeplane/lammps into small… | Mar 3 2017 | ||||
eaf7ed770750 | Anders Hafreager | Print error if pair_write does not get correct number of arguments | Mar 3 2017 | ||||
9a560b90914c | Tim Mattox | USER-DPD bugfix: make atom_vec_dpd work properly with atom_vec_hybrid. We were… | Mar 1 2017 | ||||
8a0e44db83de | Jaap Kroes | updated documentation and ev_tally | Mar 1 2017 |
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