Diffusion lammps (runner) History

USER-OMP
runner0a5c4863e14f80e89c540c8…

Jan 21 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11284 f3b2605a-c512-4ea7…
4db641a9f03c
·sjplimp on Jan 21 2014, 23:08.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11282 f3b2605a-c512-4ea7…
b26cc714c298
·sjplimp on Jan 21 2014, 16:39.

Jan 18 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
46e8e6c12078
·Axel Kohlmeyer on Jan 18 2014, 17:52.

Jan 17 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11256 f3b2605a-c512-4ea7…
cb1ad361fbf0
·sjplimp on Jan 17 2014, 22:17.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
a6ca3cab542c
·Axel Kohlmeyer on Jan 17 2014, 02:53.

Jan 14 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11243 f3b2605a-c512-4ea7…
a1ef01fc1ae2
·sjplimp on Jan 14 2014, 17:17.

Jan 8 2014

fix bug found by paul coffman
f9ac6293ec59
·Axel Kohlmeyer on Jan 8 2014, 13:49.

Dec 19 2013

fix bug in lj/sf reported by juerg diemand
05867c27426a
·Axel Kohlmeyer on Dec 19 2013, 17:37.

Nov 25 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11054 f3b2605a-c512-4ea7…
1f844fd910e9
·sjplimp on Nov 25 2013, 17:02.

Nov 23 2013

bufixes for angle style quartic
356e22265490
·Axel Kohlmeyer on Nov 23 2013, 22:55.

Oct 31 2013

restore some changes that got dropped in the last merge
e51b1faae0bb
·Axel Kohlmeyer on Oct 31 2013, 11:53.
Merge remote branch 'lammps-ro/master' into lammps-icms
cad4e3266db9
·Axel Kohlmeyer on Oct 31 2013, 11:30.

Oct 30 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10907 f3b2605a-c512-4ea7…
0fa3867f3437
·sjplimp on Oct 30 2013, 16:42.

Oct 17 2013

remove comment that is not needed
2c0da2324edb
·Axel Kohlmeyer on Oct 17 2013, 22:20.
remove statement without effect
f3facd747c77
·Axel Kohlmeyer on Oct 17 2013, 22:15.
fix embarrassing bug in unrolled force reduction
ab49ee4f1914
·Axel Kohlmeyer on Oct 17 2013, 00:06.

Oct 5 2013

add coul/dsf/omp pair styles
ac35c46950a9
·Axel Kohlmeyer on Oct 5 2013, 23:45.
remove unused variables
38952a636910
·Axel Kohlmeyer on Oct 5 2013, 23:41.
remove excess whitespace
2b9713284c4b
·Axel Kohlmeyer on Oct 5 2013, 22:56.
added tersoff/omp style
0cc56656db65
·Axel Kohlmeyer on Oct 5 2013, 19:57.
add zbl/omp pair style
2fed2809291b
·Axel Kohlmeyer on Oct 5 2013, 18:49.

Oct 4 2013

include explicit 8x loop unrolling for faster thread data reduction
0a7fbe653a26
·Axel Kohlmeyer on Oct 4 2013, 17:24.

Oct 3 2013

complete implementation of nm/cut styles for USER-OMP
21442a6221c3
·Axel Kohlmeyer on Oct 3 2013, 21:56.
add more nm/cut pair styles for USER-OMP (still incomplete)
fee8a8b3a68e
·Axel Kohlmeyer on Oct 3 2013, 20:33.

Sep 23 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10824 f3b2605a-c512-4ea7…
995ec050cee4
·sjplimp on Sep 23 2013, 18:49.

Sep 21 2013

bugfix for multi-threaded execution of pair style adp
1348d729e811
·Axel Kohlmeyer on Sep 21 2013, 23:59.

Aug 30 2013

include proposed bugfix by rolf for per-atom computes with r-RESPA
93ddb4b0e8db
·Axel Kohlmeyer on Aug 30 2013, 16:24.

Aug 10 2013

make code compile again
8bc98421d7cb
·Axel Kohlmeyer on Aug 10 2013, 03:51.

Aug 3 2013

only update the charged particles list after reneighboring
7c7617f7e5ec
·Axel Kohlmeyer on Aug 3 2013, 19:11.

Aug 1 2013

add serial and mt version of pppm/tip4p/cg
5b2056130a88
·Axel Kohlmeyer on Aug 1 2013, 16:33.

Jul 30 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10478 f3b2605a-c512-4ea7…
641726ecd753
·sjplimp on Jul 30 2013, 01:20.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10477 f3b2605a-c512-4ea7…
883553303ef5
·sjplimp on Jul 30 2013, 00:32.

Jul 28 2013

more timer tweaks and simplifications
2b6468d976cd
·Axel Kohlmeyer on Jul 28 2013, 18:08.
convert to using the Timer class in ThrData instead of rolling out own
f33aa0ad2d51
·Axel Kohlmeyer on Jul 28 2013, 14:58.

Jul 26 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10417 f3b2605a-c512-4ea7…
f086c6d5fbaf
·sjplimp on Jul 26 2013, 17:53.
make sure everything compiles again
e131e2a141a4
·Axel Kohlmeyer on Jul 26 2013, 09:09.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10392 f3b2605a-c512-4ea7…
609842916cc0
·sjplimp on Jul 26 2013, 01:52.

Jul 24 2013

more mostly cosmetic issues found by clang
1bc62d40b215
·Axel Kohlmeyer on Jul 24 2013, 23:24.
handle clang warnings
980446c6467a
·Axel Kohlmeyer on Jul 24 2013, 22:54.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10318 f3b2605a-c512-4ea7…
6884feef2cee
·sjplimp on Jul 24 2013, 15:58.
adapt to changes from upstream
45df2c2d3e0d
·Axel Kohlmeyer on Jul 24 2013, 13:59.

Jul 23 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10292 f3b2605a-c512-4ea7…
ad2266e4bf6b
·sjplimp on Jul 23 2013, 17:21.
added /omp version of tip4p/cut
00d46d8490f7
·Axel Kohlmeyer on Jul 23 2013, 13:06.

Jul 22 2013

correct error messages and docs. add /omp version for tip4p/long
d255952ed9f3
·Axel Kohlmeyer on Jul 22 2013, 23:24.

Jul 19 2013

some more clang inspired cleanups
ccb9b30c99c3
·Axel Kohlmeyer on Jul 19 2013, 19:53.

Jul 18 2013

fix typo
66eb2d03100c
·Axel Kohlmeyer on Jul 18 2013, 14:11.
remove unused variables and class members, initialize where needed.
7e3328a2a717
·Axel Kohlmeyer on Jul 18 2013, 14:08.
make sure evdwl is properly initialized
f76f5ecebed5
·Axel Kohlmeyer on Jul 18 2013, 13:51.

Jul 13 2013

remove unused variables
7887ffed73b3
·Axel Kohlmeyer on Jul 13 2013, 20:35.
silence some warnings, remove dead code
9c9f752b3bb7
·Axel Kohlmeyer on Jul 13 2013, 12:10.

Jul 9 2013

add thread timers to MSM /omp styles
b249ce65f60c
·Axel Kohlmeyer on Jul 9 2013, 09:20.
Merge branch 'mypage' into lammps-icms
89efd487b1e9
·Axel Kohlmeyer on Jul 9 2013, 08:42.

Jul 8 2013

add timer support for kspace styles
f1e9f799b067
·Axel Kohlmeyer on Jul 8 2013, 23:11.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10230 f3b2605a-c512-4ea7…
60d49a7aad50
·sjplimp on Jul 8 2013, 22:10.
add per thread timing for bonded interactions
3f77fae0b22e
·Axel Kohlmeyer on Jul 8 2013, 20:49.
add per thread timer calls to pair styles
f6ac56bfa0fd
·Axel Kohlmeyer on Jul 8 2013, 20:34.
include neighbor list per thread timing
f188305cd903
·Axel Kohlmeyer on Jul 8 2013, 20:06.
stop using clock_gettime() since it seems to be horribly inconsistent
632b105572bb
·Axel Kohlmeyer on Jul 8 2013, 20:06.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10227 f3b2605a-c512-4ea7…
40319752ad79
·sjplimp on Jul 8 2013, 17:34.
more consistent handling of timer info
287c73c02f15
·Axel Kohlmeyer on Jul 8 2013, 11:02.
clean up MyPage API to go without public variables and use aligned malloc
3c289419b0df
·Axel Kohlmeyer on Jul 8 2013, 09:17.

Jul 7 2013

bugfix for comb/omp
d8dec88599b9
·Axel Kohlmeyer on Jul 7 2013, 21:42.
port new memory allocation strategy to OpenMP for the rest (untested)
278eaaaeff02
·Axel Kohlmeyer on Jul 7 2013, 20:42.
incorporate changes from steve with adjustments for OpenMP
9db2350af159
·Axel Kohlmeyer on Jul 7 2013, 16:54.

Jul 5 2013

refactored thread timing output to be similar to MPI time stats
372a09b85211
·Axel Kohlmeyer on Jul 5 2013, 19:50.
add tag for neighborlist timing
799a70c4a9a7
·Axel Kohlmeyer on Jul 5 2013, 17:52.

Jul 4 2013

Merge branch 'omp-timer' into lammps-icms
d218872dfaaf
·Axel Kohlmeyer on Jul 4 2013, 18:15.
revert changes to granular styles and neighborlists for now.
1cc714e1b4fb
·Axel Kohlmeyer on Jul 4 2013, 18:15.
make granular neighbor list compile.
ab48c500a723
·Axel Kohlmeyer on Jul 4 2013, 17:23.
implement per thread timer breakdown
92b284468b88
·Axel Kohlmeyer on Jul 4 2013, 14:52.

Jun 30 2013

cleanups
f77ac8175847
·Axel Kohlmeyer on Jun 30 2013, 12:45.
Merge remote branch 'lammps-ro/master' into lammps-icms
6553258ee993
·Axel Kohlmeyer on Jun 30 2013, 12:41.

Jun 29 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10200 f3b2605a-c512-4ea7…
d2c3a96a9a26
·sjplimp on Jun 29 2013, 23:28.
add USER-OMP support for new nb3/harmonic pair potential
a22353de08be
·Axel Kohlmeyer on Jun 29 2013, 14:14.
include updates to rigid body integration for granular particles from upstream
ed387105c842
·Axel Kohlmeyer on Jun 29 2013, 13:54.

Jun 28 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10167 f3b2605a-c512-4ea7…
3428df4c4b90
·sjplimp on Jun 28 2013, 21:36.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10161 f3b2605a-c512-4ea7…
f37ae6cb7476
·sjplimp on Jun 28 2013, 21:06.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10150 f3b2605a-c512-4ea7…
737e5e6c3dfd
·sjplimp on Jun 28 2013, 18:55.
permission cleanup
1c337c837cac
·Axel Kohlmeyer on Jun 28 2013, 13:15.

Jun 27 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10114 f3b2605a-c512-4ea7…
71a19e3883cd
·sjplimp on Jun 27 2013, 23:44.
teach pair potentials to open potential files via open_potential()
cf7f34401c35
·Axel Kohlmeyer on Jun 27 2013, 20:49.

Jun 23 2013

massive patch to flag non-numeric input
0e045500433f
·Axel Kohlmeyer on Jun 23 2013, 14:34.

Jun 19 2013

import bugfix from rolf isele-holder
6ed180b82a7c
·Axel Kohlmeyer on Jun 19 2013, 18:09.

Jun 9 2013

import bugfix from serial version of dihedral/nharmonic
6bc744ed4cf7
·Axel Kohlmeyer on Jun 9 2013, 14:40.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
e240e15c4d5f
·Axel Kohlmeyer on Jun 9 2013, 14:35.

Jun 8 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10052 f3b2605a-c512-4ea7…
00fe31ddd407
·sjplimp on Jun 8 2013, 23:35.

Jun 7 2013

Merge remote branch 'lammps-ro/master' into lammps-icms
c9710e0c20ad
·Axel Kohlmeyer on Jun 7 2013, 14:49.

Jun 6 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10033 f3b2605a-c512-4ea7…
5a7652a8b4e6
·sjplimp on Jun 6 2013, 16:53.

Jun 1 2013

Merge remote branch 'lammps-ro/master' into lammps-icms
ce2b853e4a11
·Axel Kohlmeyer on Jun 1 2013, 13:53.

May 31 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9987 f3b2605a-c512-4ea7…
a5da3aa1ce77
·sjplimp on May 31 2013, 17:17.

May 30 2013

Merge remote branch 'lammps-ro/master' into lammps-icms
f7c48d0ee3fd
·Axel Kohlmeyer on May 30 2013, 13:28.
Merge branch 'package-management' into lammps-icms
3114525261fe
·Axel Kohlmeyer on May 30 2013, 11:45.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
c8f46921416a
·Axel Kohlmeyer on May 30 2013, 11:45.
improved Install.sh for USER-OMP
6eaf86ff6827
·Axel Kohlmeyer on May 30 2013, 11:41.

May 29 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9931 f3b2605a-c512-4ea7…
61213fbfb69d
·sjplimp on May 29 2013, 17:04.

May 28 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9928 f3b2605a-c512-4ea7…
24dc52cb69a0
·sjplimp on May 28 2013, 16:21.

May 10 2013

fix typo.
00896fb9815d
·Axel Kohlmeyer on May 10 2013, 19:42.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9860 f3b2605a-c512-4ea7…
3d5d72866157
·sjplimp on May 10 2013, 19:30.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
c1b6654dbc9c
·Axel Kohlmeyer on May 10 2013, 10:03.

May 8 2013

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9847 f3b2605a-c512-4ea7…
7018102f9f78
·sjplimp on May 8 2013, 23:08.

lammps/src/USER-OMPrunner0a5c4863e14f80e89c540c8…

Jan 21 2014

Jan 18 2014

Jan 17 2014

Jan 14 2014

Jan 8 2014

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lammps/src/USER-OMP
runner0a5c4863e14f80e89c540c8…