Diffusion LibMultiScale (master) History

History
mastere427b268427017f98ba2c9d…

Mar 15 2020

computation of gradient is now working for pbc
e427b2684270
·anciaux on Mar 15 2020, 10:14.
update akantu submodule
3a9c2e404517
·anciaux on Mar 15 2020, 10:13.

Mar 13 2020

update the akantu submodule
3220aa76bb01
·anciaux on Mar 13 2020, 08:36.
reactive pbc (still not working state)
5c2db3f3bcdc
·anciaux on Mar 13 2020, 08:34.

Mar 11 2020

correct some scripts for the tests
1c0637931daf
·anciaux on Mar 11 2020, 13:37.
print strain measured as a matrix
f2454f18efc5
·anciaux on Mar 11 2020, 12:17.
corrected a memory fault in access to strain measure in Akantu
b311e7dddea7
·anciaux on Mar 11 2020, 12:16.
Merge branch 'features/coupler_component' of ssh://c4science.
f9fba7648641
·anciaux on Mar 11 2020, 00:12.
update akantu submodule
86323a315d18
·anciaux on Mar 11 2020, 00:09.
review the communicator and operators
9a1b0454884d
·anciaux on Mar 11 2020, 00:08.
review the communicator and operators
2dfa7d835bc9
·anciaux on Mar 11 2020, 00:08.

Mar 10 2020

changing python -> python3
eb47b4115098
·anciaux on Mar 10 2020, 08:38.

Mar 9 2020

update the akantu submodule
651e690f901f
·anciaux on Mar 9 2020, 17:23.
proper initialization of mpi in test
a7ce1877e8a1
·anciaux on Mar 9 2020, 17:21.
initialization of the mpi_comm
4e21ff5ced43
·anciaux on Mar 9 2020, 17:21.
remove cmake warning
a442ff6b3f53
·anciaux on Mar 9 2020, 17:20.

Mar 8 2020

fixing the all group
ae95b0295345
·anciaux on Mar 8 2020, 23:46.

Mar 7 2020

compilation possible with only akantu activated
602d0119e8f1
·anciaux on Mar 7 2020, 18:44.

Mar 6 2020

update submodule
3f31925de900
·anciaux on Mar 6 2020, 18:21.
remove useless messages
8b0e570b4aa5
·anciaux on Mar 6 2020, 18:18.
remove useless messages
8c0204d66444
·anciaux on Mar 6 2020, 18:18.
akantu plugin compiling
d3aead60c778
·anciaux on Mar 6 2020, 18:18.
akantu plugin compiling
d5893874801c
·anciaux on Mar 6 2020, 18:18.

Mar 5 2020

libmultiscale compiles without any domain activated
db55532e0c98
·anciaux on Mar 5 2020, 16:56.
libmultiscale compiles without any domain activated
74252552e91d
·anciaux on Mar 5 2020, 16:55.
moving to up to date akantu
997d895854e7
·anciaux on Mar 5 2020, 16:35.
moving to up to date akantu
8fbedee065e9
·anciaux on Mar 5 2020, 16:33.

Mar 4 2020

all tests passing with lammps
f978afe42985
·anciaux on Mar 4 2020, 21:17.
parallel tests with lammps working: only python+lammps test missing
04516d3fe108
·anciaux on Mar 4 2020, 18:56.
parallel tests with lammps working: only python+lammps test missing
cccc8ccdf5ac
·anciaux on Mar 4 2020, 18:56.
communication has the right number: migration test still not passing
35344c13636c
·anciaux on Mar 4 2020, 12:06.

Mar 3 2020

c++17 for reference managers
4019f8fba03e
·anciaux on Mar 3 2020, 09:38.
still trying to fix parallelism of lammps ref manager
16ae02e394a0
·anciaux on Mar 3 2020, 09:23.

Mar 2 2020

fixing parallelism: still ongoing
42dff749c96d
·anciaux on Mar 2 2020, 17:32.

Feb 24 2020

adding a tests for dof accessors
1b2cc7d07255
·anciaux on Feb 24 2020, 17:15.
lammps compiling: tests to be passed
35305d95fd53
·anciaux on Feb 24 2020, 17:14.
finally all 1D tests are passing
831dd0463084
·anciaux on Feb 24 2020, 11:53.

Feb 23 2020

atomic chain lj notes
40f300d1dbba
·anciaux on Feb 23 2020, 23:15.
adding a reference md1d code
5228ea68cc05
·anciaux on Feb 23 2020, 23:14.
initial temperature ok
435fc1595444
·anciaux on Feb 23 2020, 23:11.
initial temperature ok
e63c99f1772c
·anciaux on Feb 23 2020, 23:11.

Feb 18 2020

fixing the dynamics of MD1D broke initial temp: checking conservation of energy
991bcecdedf9
·anciaux on Feb 18 2020, 17:43.
fixing the time integration problem of MD1D
8ae23a91b711
·anciaux on Feb 18 2020, 11:48.

Feb 17 2020

removing useless file + assembling more tests for Xiao
aa3d39edd871
·anciaux on Feb 17 2020, 13:33.
buildRHS of Xiao tested
e82f2fefbcf8
·anciaux on Feb 17 2020, 12:52.
the weights are now tested for xiao method
d669f0543f09
·anciaux on Feb 17 2020, 11:21.

Feb 16 2020

good state to finish the xiao test
0b1c6b04c1eb
·anciaux on Feb 16 2020, 00:29.

Feb 14 2020

adding several levels in the bridging for the python interface
a47330a68b28
·anciaux on Feb 14 2020, 18:00.
adding files to packages
6a4f9abcda38
·anciaux on Feb 14 2020, 16:28.
fixed many problems + split pybind files + added xiao to pybind
d5f7d80b0eaa
·anciaux on Feb 14 2020, 16:27.
splitting the pybind file
4cb335445331
·anciaux on Feb 14 2020, 15:47.
changing the seed perturbates the distribution
8e1996d54a08
·anciaux on Feb 14 2020, 00:04.

Feb 13 2020

adding a missing file
dd3ba8396750
·anciaux on Feb 13 2020, 22:56.
linear interpolation with the bridging works
3fe696d8c6c2
·anciaux on Feb 13 2020, 16:51.
hash of release working
e50b2165b97f
·anciaux on Feb 13 2020, 12:19.

Feb 10 2020

working extraction of field from compute in python
c53ad3e7e12d
·anciaux on Feb 10 2020, 22:23.

Feb 9 2020

started the tests for the bridging component
2b43db4478bc
·anciaux on Feb 9 2020, 10:43.

Feb 8 2020

cleaning the briding domain method
e525a607ce33
·anciaux on Feb 8 2020, 21:30.
cleaning the arlequin_template
9ae19d861676
·anciaux on Feb 8 2020, 18:02.
corrected the stack overflow bug
4dc430927aae
·anciaux on Feb 8 2020, 10:17.

Feb 7 2020

modification to link in opt mode
84079b53ef6b
·anciaux on Feb 7 2020, 11:31.
xiao test runs
c8dd2d0ba119
·anciaux on Feb 7 2020, 11:10.

Feb 5 2020

initialization of xiao coupling passed
c0c5ca5bcd90
·anciaux on Feb 5 2020, 17:21.
constraint matrix computed correctly
e14b823ae5ee
·anciaux on Feb 5 2020, 11:55.

Feb 4 2020

almost cleaned the weight computation
df1438af68c5
·anciaux on Feb 4 2020, 16:33.
separated container.cc
884cab8b4de2
·anciaux on Feb 4 2020, 15:37.
started the cleaning of ref managers
f46e4477a0fc
·anciaux on Feb 4 2020, 15:18.

Feb 2 2020

communicator not passed to bridging: to check
d05196a75eb9
·anciaux on Feb 2 2020, 15:13.
compiling and linking
cebeda9cdd73
·anciaux on Feb 2 2020, 12:54.

Jan 31 2020

started cleaning in depth of the coupling
23137d0e6074
·anciaux on Jan 31 2020, 17:15.
1D single scale tests are passing
60afd82a6f1a
·anciaux on Jan 31 2020, 15:00.

Jan 30 2020

allow to call the compute method directly if there is a single input
94fd8d801476
·anciaux on Jan 30 2020, 23:30.
when output is a component -> register himeself in output to get computed
d9177a3b4dd2
·anciaux on Jan 30 2020, 21:00.
merging released_object and LMObject
663612c0954a
·anciaux on Jan 30 2020, 19:10.

Jan 28 2020

component tests are passing
1aae7201065a
·anciaux on Jan 28 2020, 13:49.
corrected small thing: but not working yet
d037098d2a0a
·anciaux on Jan 28 2020, 09:15.
maybe it works
03d0ec1c156a
·anciaux on Jan 28 2020, 09:10.

Jan 27 2020

saving the state: almost there is seems
e6c429fea61e
·anciaux on Jan 27 2020, 23:37.
on my way
d353553e6efd
·anciaux on Jan 27 2020, 20:01.
need to wire the inputs to outputs properly
1dbdc78605c1
·anciaux on Jan 27 2020, 11:11.
correct a few things when lammps is activated
3d65845eaa5f
·anciaux on Jan 27 2020, 08:27.
advance in the component system
49a5f41edf02
·anciaux on Jan 27 2020, 01:23.

Jan 26 2020

compiling and linking: ready for tests
dced04770db9
·anciaux on Jan 26 2020, 21:17.
enforces the treatment of output
c73f13fec450
·anciaux on Jan 26 2020, 15:35.

Jan 25 2020

cleaning the components
c29addb8075a
·anciaux on Jan 25 2020, 17:44.
trying to fix first round of tests
aa3463bca6ef
·anciaux on Jan 25 2020, 09:05.

Jan 23 2020

fixing CMakeLists.txt of some tests
927249b18b8d
·anciaux on Jan 23 2020, 17:22.
update the lammps submodule
fc24a7cb1494
·anciaux on Jan 23 2020, 17:11.
working shapematrix and improved containerarray
6000ad06b64c
·anciaux on Jan 23 2020, 17:10.
working test for interpolation with shape matrix
fcc6904ca115
·anciaux on Jan 23 2020, 10:13.
working test for interpolation with shape matrix
c3c70174d082
·anciaux on Jan 23 2020, 10:08.

Jan 22 2020

adding eigen and akantu_iterators as third party
4a52f2a5948c
·anciaux on Jan 22 2020, 18:34.
fix compilation error for c++17 standard
74b8d3b12df5
·anciaux on Jan 22 2020, 14:50.
Add 'third-party/akantu_iterators/' from commit…
2532003222cd
·anciaux on Jan 22 2020, 14:37.
shape matrix test passing for interpolation
0f4828b07fa5
·anciaux on Jan 22 2020, 14:36.

Jan 21 2020

saving the latest tests
ad7d041d0cbd
·anciaux on Jan 21 2020, 16:37.
shape_matrix is merely a eigen sparse matrix
b0a1ddf8eccc
·anciaux on Jan 21 2020, 16:28.

Jan 17 2020

regular 2d mesh ready for tests of shapematrix
ffc63c0f8d68
·anciaux on Jan 17 2020, 11:47.
ongoing changes
b8882074b504
·anciaux on Jan 17 2020, 11:27.

Jan 16 2020

compiling and linking broken state
fa7463030749
·anciaux on Jan 16 2020, 13:36.

Historymastere427b268427017f98ba2c9d…

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History
mastere427b268427017f98ba2c9d…