History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
a01084ae1afa | fabien | Fix bug in SpecMiCP configuration | Jun 22 2015 | |||
28fbffc41fa8 | fabien | Do not remove H[+]/HO[-] when dissolving system | Jun 19 2015 | |||
7fee7928fda3 | fabien | Correct includes in io files | Jun 10 2015 | |||
1d81493e610c | fabien | Fix, minor improvements in SpecMiCP module | Jun 10 2015 | |||
f9d6ee556023 | fabien | Documentation | Jun 9 2015 | |||
f28c1c458a8b | fabien | Move AdimensionalSystemSolverSaver to YAML formatting | Jun 9 2015 | |||
35f1ce4a8720 | fabien | Update configurations to use the new updates in YAML module | Jun 8 2015 | |||
e809292d7440 | fabien | Add more constraints configuration | Jun 5 2015 | |||
88a299bc1607 | fabien | Start implementing constraints configuration in SpecMiCP | Jun 5 2015 | |||
7178ca623984 | fabien | Add Configuration for formulation | Jun 5 2015 | |||
7d1722d5bb0f | fabien | Modify molar_mass_<species> in DataContainer | Jun 2 2015 | |||
202e336d65a6 | fabien | Add an option to not modify the database in the dissolver | May 29 2015 | |||
fd28a36ed4a4 | fabien | Use the compounds in the dissolver | May 28 2015 | |||
a4fe4c3a589a | fabien | Add lto flags | May 18 2015 | |||
ef44ef6723d3 | fabien | Namespace documentation | May 13 2015 | |||
8b7823715ed7 | fabien | Use macro to define default options for SpecMiCP | May 13 2015 | |||
bdda0cd099d0 | fabien | I forgot the secondary aqueous species in the solution saver.... | May 5 2015 | |||
ff0d0fbcfe7b | fabien | Add the specmicp_common library | May 3 2015 | |||
7e7e298a6160 | fabien | Corret symbol export in serializer | May 1 2015 | |||
583eb2cd10a4 | fabien | Add a serializer for AdimensionalSystemSolution | May 1 2015 | |||
8dd3dcc176c6 | fabien | Minor fixes/documentation in Specmicp | Apr 30 2015 | |||
eee5a564c204 | fabien | Add a fixed molality constraints in AdimensionalSystem | Apr 30 2015 | |||
3d80bf60e333 | fabien | CmakeLists fixes/enhancements | Apr 28 2015 | |||
7df477fd05e4 | fabien | Set the visibility flags for the Specmicp library | Apr 28 2015 | |||
9c9d231a7dfd | fabien | Fixes to compile with Clang (3.6.0) | Apr 28 2015 | |||
da87eb82fc39 | fabien | Fixes suggested by Cppcheck | Apr 27 2015 | |||
ecc68045c31e | fabien | Fixes minor problems found with the new SANITIZER build type | Apr 23 2015 | |||
9f4ca7e6c456 | fabien | Use small step by default in AdimensionalSystemSolver | Apr 23 2015 | |||
40a28cb7668f | fabien | Minor fixes in Cmake files | Apr 22 2015 | |||
4dde22e2e8fc | fabien | correct inclusion of headers | Apr 21 2015 | |||
d05c342d7b8f | fabien | Proper installation of cython/databases/doc | Apr 21 2015 | |||
367d9d550e9d | fabien | finally, SpecMiCP/ReactMiCP can be installed | Apr 21 2015 | |||
9cc89d2d9dc1 | fabien | Deprecate the total_saturation_{mineral,water} | Apr 20 2015 | |||
d204ff482220 | fabien | Morning doc welcomes duck | Apr 16 2015 | |||
d242af75fe48 | fabien | Documentation | Apr 16 2015 | |||
b174f1ddf352 | fabien | License update before release | Apr 15 2015 | |||
d4be19a55956 | fabien | Improve consistency of function naming | Apr 12 2015 | |||
a5a9ab80bdf3 | fabien | Minor fixes in the c++ SpecMiCP API | Apr 11 2015 | |||
698bdbf6176e | fabien | Solution can return the vector of main solution | Apr 10 2015 | |||
824f90062e79 | fabien | Add helper meber functions | Apr 8 2015 | |||
ed9f62bffad3 | fabien | Update licence | Apr 2 2015 | |||
ea534669b0e6 | fabien | Add the ability to solve oxydoreduction system | Apr 1 2015 | |||
8d287d0302ef | fabien | Refactor residual and jacobian in specmicp | Mar 31 2015 | |||
665b1c9415f6 | fabien | fixes commit 0174eeb | Mar 27 2015 | |||
0174eeb1cf69 | fabien | Small optimization, avoid checking and scaling the molar volumes too many times… | Mar 26 2015 | |||
33d3d8b8a771 | fabien | Intern refactoring of AdimensionalSystem | Mar 26 2015 | |||
fa87e6334e88 | fabien | Disable bulk copy of variables for now - to fix | Mar 25 2015 | |||
c6b716588c1d | fabien | Update the adimensional system for the new database module | Mar 25 2015 | |||
7f9de8ece968 | fabien | Remove the ReducedSystem | Mar 24 2015 | |||
f952caf0c318 | fabien | add a convenience function in specmicp adimensional solver to solve a system | Mar 17 2015 | |||
e94e903fe893 | fabien | Update headers in the src/specmicp/adimensional files | Mar 13 2015 | |||
8e74befa1920 | fabien | Disable the descent condition in the AdimensionalSystemSolver. | Mar 13 2015 | |||
5e764b31a7c6 | fabien | Add a return value (boolean) in the AdimensionalSystemPCFM::check_validity | Mar 13 2015 | |||
f5f97272d811 | fabien | Add a threshold for including the component in the computation in… | Mar 13 2015 | |||
9cf41f6dfb45 | fabien | Randomize the restarting guess in AdimensionalSystem. | Feb 28 2015 | |||
bddaf0d936da | fabien | Add a validity check (just print warning and or error for the PCFM method… | Feb 27 2015 | |||
0b1682bb59f9 | fabien | Correct the AdimensionalSystem jacobian, fixes issue #29 | Feb 25 2015 | |||
ac9b4eb735f4 | fabien | Correct the surface model, so the activity are defined with respect to the… | Feb 25 2015 | |||
a4055a6a6783 | fabien | Correct porosity computation, minerals offset | Feb 24 2015 | |||
d76c3f21bd38 | fabien | Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages… | Feb 23 2015 | |||
8b5357988ba5 | fabien | Correct jacobian computation (both analytical and finite difference) in… | Feb 23 2015 | |||
d39cf3d5d38a | fabien | Improve initialisation of surface model in AdimensionalSystemConstraints | Feb 23 2015 | |||
59f0bfff78d5 | fabien | AdimensionalSystemSolver variable initalization : change… | Feb 23 2015 | |||
69652eb35705 | fabien | documentation fixes for AdimensionalSystemNumbering | Feb 23 2015 | |||
4338212826c9 | fabien | Add a function in AdimensionalSystem that return the surface sorption model | Feb 23 2015 | |||
2d49c2d3302a | fabien | include the pcfm method to the AdimensionalSystemSolver | Feb 17 2015 | |||
c7608a0ce239 | fabien | Add AdimensionalSystemPCFM, a class to precondition an aqeous solver using the… | Feb 17 2015 | |||
8ecff9b7f967 | fabien | Documentation for AdimensionalSystem | Feb 17 2015 | |||
08d31233017d | fabien | add numbering of secodnary species and activity coefficients in… | Feb 16 2015 | |||
2e391aab5671 | fabien | Add functions for custom initialisation of the main variables | Feb 16 2015 | |||
78836305e4b0 | fabien | reuse already defined function to compute the total solid concentration of a… | Feb 16 2015 | |||
680ccde7e3f4 | fabien | Use the new AdimensionalSystemNumbering Base clase in the… | Feb 16 2015 | |||
31d88c30dde8 | fabien | externalize the dof numberign of the AdimensionalSystem, so it can be used by… | Feb 16 2015 | |||
5e7f42ca25c3 | fabien | The main variable for the free surface concentration is now a the log_10 of the… | Feb 16 2015 | |||
987ce3089fb7 | fabien | Modify sorped species calculation, add a specific equation. Free sorption sites… | Feb 13 2015 | |||
26182c883bf1 | fabien | improve AdimKinetic(Euler)Solver, choose DormandPrince as the ODE integrator | Feb 11 2015 | |||
8ec8f50ef0fa | fabien | small corrections for the adimensional system with the new sorbed species | Feb 10 2015 | |||
1af9208c7a4c | fabien | add support for sorbed species in AdmiensionalSystem | Feb 10 2015 | |||
513ba6bd0ef3 | fabien | correct jacobian for the water equation in AdimensionalSystem, fixes issue #25 | Feb 10 2015 | |||
9290bd437d11 | fabien | small enhancements of specmicp | Feb 10 2015 | |||
835f7071e071 | fabien | add a boolean to check that the solution has been initialized | Feb 10 2015 | |||
c0917faf9b6a | fabien | allow custom initialisation | Feb 10 2015 | |||
a388607362fe | fabien | add kinetics solver for the AdimensionalSystem (issue #15), TO TEST | Feb 10 2015 | |||
47a6cfb7136d | fabien | correct AdimensionalSystemSolutionExtractor::log_molality_component for water | Feb 6 2015 | |||
cd36fb74436f | fabien | correct typo in residual water in AdimensionalSystem, fixes bug #20 | Feb 3 2015 | |||
86c34c364f68 | fabien | add scaling for the AdimensionalSystem, fixes issue #23 | Feb 3 2015 | |||
50b53a239634 | fabien | correct pressure contribution in specmicp, fixes issue #24 | Feb 3 2015 | |||
29b3278d5651 | fabien | fixes bug introduced by commit 64b3616, get_performance was removed from… | Jan 20 2015 | |||
056dfbdf23b9 | fabien | Documentation for the adimensionalsystem and associates | Jan 20 2015 | |||
19d5b16cc3f1 | fabien | Documentation for specmicp::AdimensionalSystem | Jan 19 2015 | |||
b2bda1a419fd | fabien | documentation | Jan 16 2015 | |||
c99feaa01903 | fabien | Prepare AdimensionalSystem environment for kinetics | Jan 15 2015 | |||
a3c945176de8 | fabien | Restart values for the concentration in AdimensionalSystem is now an… | Jan 15 2015 | |||
26ecea65a83b | fabien | Add AdimensionalSystemSolutionModificator, to modify (scaling, removing solid… | Jan 14 2015 | |||
cefbc702655c | fabien | use correct mmember functions in assert in AdimensionalSystem | Jan 12 2015 | |||
030defdf3929 | fabien | rename BC to constraints in AdimensionalSystem | Dec 19 2014 | |||
681e327723b8 | fabien | do not copy the solution in the solution extractor | Dec 19 2014 | |||
6203177d8b3f | fabien | improve documentation of AdimensionalSystem | Dec 15 2014 | |||
067602901bfb | fabien | add WaterEquationType to the AdimensionalSystem | Dec 15 2014 | |||
110e0d72687e | fabien | remove const keyword for the output member | Dec 9 2014 |
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