History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
0b1682bb59f9 | fabien | Correct the AdimensionalSystem jacobian, fixes issue #29 | Feb 25 2015 | |||
ac9b4eb735f4 | fabien | Correct the surface model, so the activity are defined with respect to the… | Feb 25 2015 | |||
a4055a6a6783 | fabien | Correct porosity computation, minerals offset | Feb 24 2015 | |||
d76c3f21bd38 | fabien | Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages… | Feb 23 2015 | |||
8b5357988ba5 | fabien | Correct jacobian computation (both analytical and finite difference) in… | Feb 23 2015 | |||
d39cf3d5d38a | fabien | Improve initialisation of surface model in AdimensionalSystemConstraints | Feb 23 2015 | |||
59f0bfff78d5 | fabien | AdimensionalSystemSolver variable initalization : change… | Feb 23 2015 | |||
69652eb35705 | fabien | documentation fixes for AdimensionalSystemNumbering | Feb 23 2015 | |||
4338212826c9 | fabien | Add a function in AdimensionalSystem that return the surface sorption model | Feb 23 2015 | |||
2d49c2d3302a | fabien | include the pcfm method to the AdimensionalSystemSolver | Feb 17 2015 | |||
c7608a0ce239 | fabien | Add AdimensionalSystemPCFM, a class to precondition an aqeous solver using the… | Feb 17 2015 | |||
8ecff9b7f967 | fabien | Documentation for AdimensionalSystem | Feb 17 2015 | |||
08d31233017d | fabien | add numbering of secodnary species and activity coefficients in… | Feb 16 2015 | |||
2e391aab5671 | fabien | Add functions for custom initialisation of the main variables | Feb 16 2015 | |||
78836305e4b0 | fabien | reuse already defined function to compute the total solid concentration of a… | Feb 16 2015 | |||
680ccde7e3f4 | fabien | Use the new AdimensionalSystemNumbering Base clase in the… | Feb 16 2015 | |||
31d88c30dde8 | fabien | externalize the dof numberign of the AdimensionalSystem, so it can be used by… | Feb 16 2015 | |||
5e7f42ca25c3 | fabien | The main variable for the free surface concentration is now a the log_10 of the… | Feb 16 2015 | |||
987ce3089fb7 | fabien | Modify sorped species calculation, add a specific equation. Free sorption sites… | Feb 13 2015 | |||
26182c883bf1 | fabien | improve AdimKinetic(Euler)Solver, choose DormandPrince as the ODE integrator | Feb 11 2015 | |||
8ec8f50ef0fa | fabien | small corrections for the adimensional system with the new sorbed species | Feb 10 2015 | |||
1af9208c7a4c | fabien | add support for sorbed species in AdmiensionalSystem | Feb 10 2015 | |||
513ba6bd0ef3 | fabien | correct jacobian for the water equation in AdimensionalSystem, fixes issue #25 | Feb 10 2015 | |||
9290bd437d11 | fabien | small enhancements of specmicp | Feb 10 2015 | |||
835f7071e071 | fabien | add a boolean to check that the solution has been initialized | Feb 10 2015 | |||
c0917faf9b6a | fabien | allow custom initialisation | Feb 10 2015 | |||
a388607362fe | fabien | add kinetics solver for the AdimensionalSystem (issue #15), TO TEST | Feb 10 2015 | |||
47a6cfb7136d | fabien | correct AdimensionalSystemSolutionExtractor::log_molality_component for water | Feb 6 2015 | |||
cd36fb74436f | fabien | correct typo in residual water in AdimensionalSystem, fixes bug #20 | Feb 3 2015 | |||
86c34c364f68 | fabien | add scaling for the AdimensionalSystem, fixes issue #23 | Feb 3 2015 | |||
50b53a239634 | fabien | correct pressure contribution in specmicp, fixes issue #24 | Feb 3 2015 | |||
29b3278d5651 | fabien | fixes bug introduced by commit 64b3616, get_performance was removed from… | Jan 20 2015 | |||
056dfbdf23b9 | fabien | Documentation for the adimensionalsystem and associates | Jan 20 2015 | |||
19d5b16cc3f1 | fabien | Documentation for specmicp::AdimensionalSystem | Jan 19 2015 | |||
b2bda1a419fd | fabien | documentation | Jan 16 2015 | |||
c99feaa01903 | fabien | Prepare AdimensionalSystem environment for kinetics | Jan 15 2015 | |||
a3c945176de8 | fabien | Restart values for the concentration in AdimensionalSystem is now an… | Jan 15 2015 | |||
26ecea65a83b | fabien | Add AdimensionalSystemSolutionModificator, to modify (scaling, removing solid… | Jan 14 2015 | |||
cefbc702655c | fabien | use correct mmember functions in assert in AdimensionalSystem | Jan 12 2015 | |||
030defdf3929 | fabien | rename BC to constraints in AdimensionalSystem | Dec 19 2014 | |||
681e327723b8 | fabien | do not copy the solution in the solution extractor | Dec 19 2014 | |||
6203177d8b3f | fabien | improve documentation of AdimensionalSystem | Dec 15 2014 | |||
067602901bfb | fabien | add WaterEquationType to the AdimensionalSystem | Dec 15 2014 | |||
110e0d72687e | fabien | remove const keyword for the output member | Dec 9 2014 | |||
c3c6d4e7ad1c | fabien | correct AdimensionalSystemSolver : now, works with 2 or more non active… | Dec 9 2014 | |||
481fe8a4b959 | fabien | correct AdimensionalSystemSolver : now, works with 2 or more non active… | Dec 9 2014 | |||
d442c9ff39a3 | fabien | Add EquilibriumCurve, base class to create ReactionPath model | Dec 5 2014 | |||
3eec16ab89ba | fabien | add member to compute contribution to total concentration | Dec 5 2014 | |||
49676e6dff97 | fabien | initialize gas fugacity using previous solution | Dec 3 2014 | |||
4492a6f8382a | fabien | solve fix activity/fix fugacity problems | Dec 3 2014 | |||
c714d768185e | fabien | add handling of fugacity in AdimensionalSystemSolution | Dec 3 2014 | |||
32144b0c32f5 | fabien | Add better handling of boundary conditions, toward the inclusion of fixed… | Dec 3 2014 | |||
f5fae35bcbf9 | fabien | More flexible struct to choose equation type for aqueous type in the… | Dec 2 2014 | |||
3cd1304c75d9 | fabien | add non fixed fugacity gas | Dec 2 2014 | |||
0b629aa5b824 | fabien | add AdimensionalSystemOptions, like ReducedSystemOptions | Dec 2 2014 | |||
96b7b4f73361 | fabien | add options for reduced system | Dec 1 2014 | |||
fd81222c02eb | fabien | add a method to check if there is any solid in the speciation solution | Nov 23 2014 | |||
0d2b686c39c7 | fabien | correct compilation error link to namespace | Nov 22 2014 | |||
3a8861713bdf | fabien | small corrections in specmicp ReducedSystem and associate | Nov 22 2014 | |||
1449c5f7ed20 | fabien | Add AdimensionnalSystemSolutionExtractor | Nov 22 2014 | |||
225e2990dde6 | fabien | include decimeter into computation, + better restarting guess | Nov 21 2014 | |||
7976b7effc36 | fabien | improve problem solver | Nov 21 2014 | |||
d1998e3678d3 | fabien | add solver for Adimensional system and Dissolver, to set up problem | Nov 20 2014 | |||
e2078e2d32ae | fabien | rename adim into adimensional system | Nov 19 2014 | |||
9192af49fe62 | fabien | Remove unused header file in Reduced system | Nov 19 2014 | |||
99eb486901e6 | fabien | add support for units in adimensional system | Nov 19 2014 | |||
477470dc6bc8 | fabien | implementation of adimensional system and test | Nov 18 2014 | |||
6da64e226377 | fabien | Correct/improve equilibrium data | Nov 16 2014 | |||
86887f7bc2f2 | fabien | improve kinetic system | Nov 11 2014 | |||
05109a387e26 | fabien | add computation of total concentrations in equilibrium data | Nov 11 2014 | |||
bc9b1984b554 | fabien | add kinetic solver - to be improved | Nov 7 2014 | |||
2f65d5a63c08 | fabien | start implementing kinetics solver | Oct 28 2014 | |||
bbb049d91863 | fabien | add explicit charge conservation in ReducedSystem | Oct 26 2014 | |||
7135b65ac516 | fabien | correct equilibrium_date (int -> index_t) | Oct 22 2014 | |||
7009d71a1296 | fabien | lots of small corrections | Oct 21 2014 | |||
f42f76860daf | fabien | adapt reduce_system_Solver to allow minerals that can't dissolve | Oct 10 2014 | |||
a70d03795fe6 | fabien | delete previous files added by mistake | Oct 6 2014 | |||
c7ac0a493911 | fabien | update database, micpsolver and specmicp to use common.hpp | Oct 6 2014 | |||
a04acf96600a | fabien | modify equilibrium data so it uses the new common.hpp | Oct 6 2014 | |||
f0bae6f199e0 | fabien | add scaling method in EquilibriumState | Oct 1 2014 | |||
a68894083238 | fabien | update and coupling utils in SIASaturatedVariables | Sep 28 2014 | |||
6110aa030886 | fabien | allow the non-conservation of water in reaction_path/reduce_system | Sep 26 2014 | |||
26456e9e2cd2 | fabien | add a few methods to EquilibriumState | Sep 21 2014 | |||
8a4ab92c89b3 | fabien | Correct bug in ionic strength computation in Reducedsystem | Sep 21 2014 | |||
141e6db490b4 | fabien | correction of bugs due to merging, also use new database range_* function in… | Sep 10 2014 | |||
fe4a3c6ffe37 | fabien | Merge branch 'reactivetransport' | Sep 10 2014 | |||
8d16e3a0c811 | fabien | remove thermodata.hpp, use DataContainer in reduced solver | Sep 10 2014 | |||
f1b23f04d9ad | fabien | introducing DiffusionSecondary for activity coefficient and concentration of… | Sep 10 2014 | |||
e0f20360e06e | fabien | move and improve equation numbering for diffusion reactive transport system | Sep 10 2014 | |||
f89b95873e65 | fabien | The python interface is able to solve the first step of thermocarbo | Sep 9 2014 | |||
5d71ccc1da23 | fabien | Starting the work on the reaction path solver | Sep 8 2014 | |||
54f50e62ff4b | fabien | reintroduce the old solver, for a ~working min solver | Sep 5 2014 | |||
b9fd53649f8f | fabien | check if mineral species contribute to total concentration | Sep 5 2014 | |||
07a62349e37e | fabien | use the activity for the pH, not the molality | Sep 1 2014 | |||
879414fa334f | fabien | comments and doc for reduced system solver | Aug 19 2014 | |||
510760a8471f | fabien | correct and add comments EquilibriumState | Aug 19 2014 | |||
a583a91abe36 | fabien | comment and small refactoring for ReactionPathDriver | Aug 19 2014 | |||
e9f68b0250c3 | fabien | simplify initialisation of reaction path driver | Aug 18 2014 | |||
be84b355a07d | fabien | change copyright | Aug 18 2014 | |||
2555d4790cc7 | fabien | cleaning not working gasphase in reduce_system | Aug 18 2014 |
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