Diffusion SpecMiCP / ReactMiCP (master) History

reactmicp
masterd5e8101252774f950ce4386…

Apr 19 2016

fix various bugs found with asan/ubsan
d5e810125277
·georget on Apr 19 2016, 03:15.

Apr 9 2016

fix:build fix hdf5 include directories
97dcff9fa40d
·georget on Apr 9 2016, 20:27.

Apr 7 2016

fix:reactmicp:unsaturated:transport_stagger move dfpm solver initialization
8d7445331c34
·georget on Apr 7 2016, 17:56.
impr:reactmicp:solver print debug information if return code is good enough
6e88c9b19244
·georget on Apr 7 2016, 17:49.

Apr 6 2016

impr:reactmicp:unsaturated only compute residual 0 when initialisation is done
080906e9f926
·georget on Apr 6 2016, 22:45.
impr:reactmicp:unsaturated compute equilibrium for each node at the beginning…
5f8a1f17204f
·georget on Apr 6 2016, 19:20.

Apr 1 2016

fix:build install specmicp/reactmicp main headers
d72d8bcb98a4
·georget on Apr 1 2016, 19:00.

Mar 31 2016

impr:reactmicp:unsaturated openmp directives -> change scheduling for solving…
abfc691f2c1d
·georget on Mar 31 2016, 02:35.
impr:reactmicp:unsaturated:io rewrited hdf5 saver/reader using new wrapper
3e0ab284bd47
·georget on Mar 31 2016, 02:35.

Mar 21 2016

upd:reactmicp runner also output the resource usage information
1e56d0882286
·georget on Mar 21 2016, 20:30.

Mar 20 2016

doc:reactmicp:solver
18753ecb08de
·georget on Mar 20 2016, 16:36.

Mar 18 2016

upd:reactmicp:solver hide implementation details of runner
e21028dfd1f9
·georget on Mar 18 2016, 14:44.

Mar 17 2016

fix:reactmicp:solver timer, and timer output
8b85285ada0c
·georget on Mar 17 2016, 15:39.

Mar 16 2016

impr:reactmicp:unsaturated can now use millimoles unit
41fa07d8cfab
·georget on Mar 16 2016, 15:44.

Mar 7 2016

cosmetic:unsaturated
712a7e059d81
·georget on Mar 7 2016, 21:46.
impr:reactmicp move all timestep initialization to transport stagger
81ec8df88413
·georget on Mar 7 2016, 21:43.
impr:unsaturated:chemistry return option vector
06a7c676281b
·georget on Mar 7 2016, 21:38.
impr:reactmicp share chemistry and transport stagger with upscaling stagger
3d97f5b10cac
·georget on Mar 7 2016, 21:32.

Mar 2 2016

impr:reactmicp:solver allow passing the working directory
c5400cbd468d
·georget on Mar 2 2016, 17:07.
fix:unsaturated many small corrections
72260a03c6cc
·georget on Mar 2 2016, 16:01.

Feb 29 2016

fix:reactmicp:unsaturated fix ? some work still needed on merged equations
f7dff2d80197
·georget on Feb 29 2016, 18:44.
impr:reactmicp:unsaturated use smart solver if needed in equilibrium stagger
d4df81a69eac
·georget on Feb 29 2016, 15:32.
impr:reactmicp call to transport stagger to print information
4eccfa347703
·georget on Feb 29 2016, 15:28.

Feb 26 2016

impr:unsaturated add debug information in equilibrium_stagger
c54dc4629ec7
·georget on Feb 26 2016, 17:33.
fix:systems:unsaturated:variables also reset secondary variables
c47f2ae4e1c8
·georget on Feb 26 2016, 16:16.
fix:unsaturated:transport_stagger multiple fixes
c009ebffe161
·georget on Feb 26 2016, 16:06.
fix:reactmicp:runner fix output when error happen
41638955a9ab
·georget on Feb 26 2016, 15:54.

Feb 24 2016

impr:reactmicp solve last timestep
a343a6e56309
·georget on Feb 24 2016, 17:01.
impr:reactmicp print updtate in iter.dat file
b7feed8c4364
·georget on Feb 24 2016, 15:26.

Feb 23 2016

upd:reactmicp configuration logs
c5960bb39088
·georget on Feb 23 2016, 19:21.
impr:unsaturated scaling of equations
0c267aad86d8
·georget on Feb 23 2016, 05:01.

Feb 22 2016

fix:unsaturated improve unsaturated system
54b4cd1847e6
·georget on Feb 22 2016, 18:46.

Feb 20 2016

feat:unsaturated Add better bcs management
f8005ed71a51
·georget on Feb 20 2016, 16:42.

Feb 12 2016

feat:build add config.h for compilation configuration
c9be56a25d1b
·georget on Feb 12 2016, 19:59.

Feb 11 2016

upd:examples saturated carbonation comples with new safe config
3a8d0ac4dcdd
·georget on Feb 11 2016, 23:18.
impr:config put all yaml sections/attributes definitions in one file
164da40b7b8e
·georget on Feb 11 2016, 21:52.

Feb 9 2016

fix:unsaturated Add virtual destructor in TaskBase of the Transport stagger
5cd777d340f0
·georget on Feb 9 2016, 22:46.
impr:unsaturated check variables after stagger initialization
aaba6845120f
·georget on Feb 9 2016, 15:36.

Feb 7 2016

fix:dfpm move parabolic solver configuration to dfpm module
ad9485debbde
·georget on Feb 7 2016, 20:28.
impr:organization update reactmicp lib like the others
febe8f3e40e1
·georget on Feb 7 2016, 17:08.

Feb 5 2016

impr:reacmicp move configuration to the nuw safe_config module
02297163a9df
·georget on Feb 5 2016, 19:45.
impr:unsaturated new safe yaml config for upscaling interface
f4a0766ab4b2
·georget on Feb 5 2016, 19:37.

Feb 4 2016

impr:unsaturated use new safe YAML config to configure the boundary conditions
c0b0df5b49df
·georget on Feb 4 2016, 15:30.
impr:unsaturated use new safe yaml config to initialize variables
b98b799c5302
·georget on Feb 4 2016, 15:29.
impr:unsaturated add nodes in bcs using vector
18aa613d0ff2
·georget on Feb 4 2016, 15:23.

Jan 29 2016

feat:unsaturated add plugin base class for UpscalingStagger
07cf02484278
·fabien on Jan 29 2016, 16:51.
fix:unsaturated Const-correctness for a few members of UnsaturatedVariables
c906d2dfe281
·fabien on Jan 29 2016, 16:44.
fix:unsaturated API of ItizializeVariables plugin
38fcc4f2a0c0
·fabien on Jan 29 2016, 16:39.
fix:io:unsaturated Export configuration symbols
10d3d5f12060
·fabien on Jan 29 2016, 16:32.
feat:unsaturated share simulation data through a unified struct
5a0ff54ef63c
·fabien on Jan 29 2016, 16:30.
impr:io:reactmicp add conservative DFPMoptions conf parser
3e29b51167ae
·fabien on Jan 29 2016, 16:27.

Jan 28 2016

feat:io unsaturated configuration of EquilibriumOptions
ac55e834f6f0
·fabien on Jan 28 2016, 03:51.
fix:unsaturated add OptionsVector as its own class
5a5b0d18024f
·fabien on Jan 28 2016, 01:16.

Jan 27 2016

feat:unsaturated add configuration of boundary conditions
945b7db8f333
·fabien on Jan 27 2016, 22:43.
impr:unsaturated add a few members to BoundaryConditions
31924008cc60
·fabien on Jan 27 2016, 22:37.
fix:unsaturated API consistency for Transport stagger
48c2baac78e2
·fabien on Jan 27 2016, 15:29.
impr:unsaturated EquilibriumStagger uses BoundaryCondtions
c6a4efb23f34
·fabien on Jan 27 2016, 15:29.
fix:unsaturated Boundary Conditions can change the constraint of a node
76f6eb61488c
·fabien on Jan 27 2016, 15:01.

Jan 26 2016

fix:unsaturated CMakeLists.txt
59fda003090f
·fabien on Jan 26 2016, 22:42.
impr:unsaturated transport stagger use the new boundary condtions
4ea31a69af86
·fabien on Jan 26 2016, 22:40.
feat:unsaturated: add global BoundaryConditions handler
c008333c65c3
·fabien on Jan 26 2016, 22:35.

Jan 23 2016

feat:unsaturated add an empty base classe for variable initialization
0b7da50de539
·fabien on Jan 23 2016, 21:10.

Jan 22 2016

hdf5:unsaturated start implementing reading of hdf5 variables
9e661c9932f8
·fabien on Jan 22 2016, 21:05.

Jan 9 2016

reactmicp:unsaturated first version that really works
bd80dafda1b1
·fabien on Jan 9 2016, 20:28.

Jan 3 2016

license: modify license to include year 2016
235eaf0b5b35
·fabien on Jan 3 2016, 00:04.

Jan 2 2016

impr:reactmicp change check of variables using the new module
78496b77e932
·fabien on Jan 2 2016, 20:19.

Dec 31 2015

impr:reactmicp use pimpl_ptr in unsaturated system
d20480d9c835
·fabien on Dec 31 2015, 17:05.

Dec 28 2015

fix:reactmicp:openmp fix error due to const var
ddf7c6e91281
·fabien on Dec 28 2015, 19:19.
APIChange:reactmicp use const pointers in Upscaling staggers
f6034133dd56
·fabien on Dec 28 2015, 18:08.
APIChange:reactmicp add const to var pointers in transport staggers
422d844cc4b7
·fabien on Dec 28 2015, 17:32.
APIChange:reactmicp const pointer in chemistry staggers
4dbbf9cd6a19
·fabien on Dec 28 2015, 16:27.

Dec 21 2015

APIChange:reactmicp don't pass shared_ptr around
50aad6edff32
·fabien on Dec 21 2015, 03:17.

Dec 19 2015

impr: fix compilation warning (gcc and clang)
61a1e89e1271
·fabien on Dec 19 2015, 21:11.
impr: also reset porosity in unsaturated system
39e77c269de4
·fabien on Dec 19 2015, 19:48.

Dec 16 2015

fix: fix commit 9d4326f where some stuff where deleted by error
7960b6475c74
·fabien on Dec 16 2015, 22:15.
doc: remove lots of warning in doc generation
9d4326f47013
·fabien on Dec 16 2015, 17:49.

Nov 26 2015

Merge branch 'master' of bitbucket.org:specmicp/specmicp
d772a6bdc096
·fabien on Nov 26 2015, 18:26.
fix: save the correct total solid concentration for the aqueous components
4b6fe1ca457f
·fabien on Nov 26 2015, 18:23.
impr: also save the porosity in the unsaturated output file
6b2e41bc75f2
·fabien on Nov 26 2015, 18:23.
fix: do not include gas equation if it is merged with the aqueous equation
b15da4066f57
·fabien on Nov 26 2015, 18:20.
fix: Add missing extern template instanciation in transport stagger
d274109c12fc
·fabien on Nov 26 2015, 18:19.
impr: what if the previous solution is not valid ?
60d533873806
·fabien on Nov 26 2015, 18:18.
impr: use average functions to do average in equations
13d195f6c7f5
·fabien on Nov 26 2015, 18:16.

Nov 25 2015

fix: fix hdf5 cmake include dirs/definitions, yes again...
f77af9a60aa4
·fabieng on Nov 25 2015, 05:24.
fix: fix include dir hdf5 (second)
82934be6a211
·fabien on Nov 25 2015, 04:26.
fix: correct include directories for HDF5
6c0ef321bcf9
·fabien on Nov 25 2015, 04:11.

Nov 23 2015

feat: use merged equations in transport stagger
7a5ed612bb39
·fabien on Nov 23 2015, 23:03.
feat: add merged equation gas+aqueous
9f263e40c9a9
·fabien on Nov 23 2015, 23:00.

Nov 21 2015

impr: add member to compute vapor pressure at a node
fe730a86a4bc
·fabien on Nov 21 2015, 00:48.

Nov 20 2015

fix : unsaturated reactive transport is working ! but slow...
a6c6bddc3c1f
·fabien on Nov 20 2015, 22:49.
feat: use new SaturationPressureEquation in transport stagger
05403a90982d
·fabien on Nov 20 2015, 15:07.
impr: use the template instanciation from equation units in transport stagger
ecdedfed7695
·fabien on Nov 20 2015, 15:07.
feat: add SaturationPressureEquation
9a2ffe1a0437
·fabien on Nov 20 2015, 15:07.
impr: use ValueChecker to check unsaturated variables
6ce35e10c6f3
·fabien on Nov 20 2015, 15:07.
impr: introduce FV1DOFEquation
276744263d3d
·fabien on Nov 20 2015, 15:05.

Nov 15 2015

feat: save transport properties as well
3390f8785beb
·fabien on Nov 15 2015, 21:43.
feat: save unsaturated variables
648ee677491f
·fabien on Nov 15 2015, 21:43.
feat : HDF5File : wrapper around a HDF5 file
8f9891f52ab4
·fabien on Nov 15 2015, 21:43.

Nov 11 2015

Add openmp support in equilibrium/transport stagger
e56213af5020
·fabien on Nov 11 2015, 21:54.
API of equilibrium/transport staggers
008df9c9036e
·fabien on Nov 11 2015, 21:54.

specmicp/src/reactmicpmasterd5e8101252774f950ce4386…

Apr 19 2016

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Nov 11 2015

specmicp/src/reactmicp
masterd5e8101252774f950ce4386…