Diffusion SpecMiCP / ReactMiCP (oxydoreduc) History

History
oxydoreduc225e2990dde6d76769ea1c8…

Nov 21 2014

include decimeter into computation, + better restarting guess
225e2990dde6
·fabien on Nov 21 2014, 16:48.
remove jsoncpp from the library we link too, it is already included
87334ca27afe
·fabien on Nov 21 2014, 16:43.
perturb jacobian if it cannot be factorized when no scaling is used - same as…
dd32bf844e0c
·fabien on Nov 21 2014, 16:41.
improve problem solver
7976b7effc36
·fabien on Nov 21 2014, 16:12.
add missing dependancy for src/utils/log.hpp, order of include does not matter…
d4534f7eaf1e
·fabien on Nov 21 2014, 16:11.
add decimeter as a length unit (for liter)
101e1e70dfc5
·fabien on Nov 21 2014, 16:08.

Nov 20 2014

add solver for Adimensional system and Dissolver, to set up problem
d1998e3678d3
·fabien on Nov 20 2014, 02:41.
add a molar_mass_basis function adjustable to the unit in the database
c1d916f6a6a8
·fabien on Nov 20 2014, 02:37.

Nov 19 2014

rename adim into adimensional system
e2078e2d32ae
·fabien on Nov 19 2014, 16:42.
Remove unused header file in Reduced system
9192af49fe62
·fabien on Nov 19 2014, 16:24.
add support for units in adimensional system
99eb486901e6
·fabien on Nov 19 2014, 16:21.
add support for units in database
a80d7faccc53
·fabien on Nov 19 2014, 16:19.
add supports for units
55250fbca69d
·fabien on Nov 19 2014, 16:18.

Nov 18 2014

implementation of adimensional system and test
477470dc6bc8
·fabien on Nov 18 2014, 23:54.
set porosity to the good value
c247cad865b6
·fabien on Nov 18 2014, 15:13.

Nov 17 2014

update leaching example
c37a53cf2ee0
·fabien on Nov 17 2014, 21:01.
correct naming in uniform mesh 1D
4905ca8043ef
·fabien on Nov 17 2014, 20:58.
improve reactive solver
ab9678d714b1
·fabien on Nov 17 2014, 20:56.
style
811727685964
·fabien on Nov 17 2014, 20:56.

Nov 16 2014

Correct/improve equilibrium data
6da64e226377
·fabien on Nov 16 2014, 19:55.

Nov 13 2014

update carbonation and leaching example to use the latest developments
dc0a7d7b0a80
·fabien on Nov 13 2014, 00:57.
use temporary variables for the computation
75e069a6735b
·fabien on Nov 13 2014, 00:56.
add support for gmres in sparse_solver module
f67b525bf55f
·fabien on Nov 13 2014, 00:55.
use new Performance Structure/ PErformance handler and Options handler in…
d9b9320c1f9b
·fabien on Nov 13 2014, 00:54.
add options to reset the options in Options handler
736804e88863
·fabien on Nov 13 2014, 00:48.
correct boost include dir varaibles in CMakelist.txt
8d8999e139be
·fabien on Nov 13 2014, 00:47.
Add PerformanceHandler on the model of OptionsHandler
a4f20df9b49f
·fabien on Nov 13 2014, 00:46.
rename file containing the reactive transport solver options
25b4a7a686ca
·fabien on Nov 13 2014, 00:45.

Nov 11 2014

update examples for reactmicp
5246c20b3234
·fabien on Nov 11 2014, 22:04.
improve reactmicp
e1f224c238f0
·fabien on Nov 11 2014, 22:04.
improve kinetic system
86887f7bc2f2
·fabien on Nov 11 2014, 22:03.
add computation of total concentrations in equilibrium data
05109a387e26
·fabien on Nov 11 2014, 22:02.
correct strang linesearch
89ad784609cf
·fabien on Nov 11 2014, 22:01.
update cemdata database for new version of jsoncpp
d36d2c5a0a89
·fabien on Nov 11 2014, 22:00.
update database reader to use the 3d party jsoncpp lib
71533d2f738a
·fabien on Nov 11 2014, 21:59.
Update Cmakelist, easier to compile in ohter system (i.e. denali)
2763d88b9342
·fabien on Nov 11 2014, 21:58.

Nov 7 2014

add kinetic solver - to be improved
bc9b1984b554
·fabien on Nov 7 2014, 19:07.
update/improve Runge-Kutta solver
76335401d226
·fabien on Nov 7 2014, 19:06.
options to enable/disable nonmonotone linesearch
f6de050d917e
·fabien on Nov 7 2014, 18:59.
add base class to handle options
d6ddcf0a9bd2
·fabien on Nov 7 2014, 18:58.

Oct 28 2014

start implementing kinetics solver
2f65d5a63c08
·fabien on Oct 28 2014, 20:44.
clean ode integrator
250e37bca411
·fabien on Oct 28 2014, 15:28.

Oct 26 2014

update cython interface to use the licit charge conservation equation
0b9e18fb7d56
·fabien on Oct 26 2014, 19:45.
add explicit charge conservation in ReducedSystem
bbb049d91863
·fabien on Oct 26 2014, 19:16.
undef INFO macro, specmicp logger's INFO is the correct one, not the one by…
29fe36a29e5a
·fabien on Oct 26 2014, 00:32.
move and try improving sparse solver tools
b86528d727b5
·fabien on Oct 26 2014, 00:03.

Oct 25 2014

add reactive transport neutrality solver, and update transport program and the…
6d08d8744732
·fabien on Oct 25 2014, 22:31.
add transport_parameters_base, to share porosity and have only one variables
745d2292fc54
·fabien on Oct 25 2014, 22:29.
set update check to be at machine epsilon in secondary variables computation
8ce74ad5e3d5
·fabien on Oct 25 2014, 22:24.
improve drivers
849e20a62100
·fabien on Oct 25 2014, 22:22.

Oct 22 2014

correct equilibrium_date (int -> index_t)
7135b65ac516
·fabien on Oct 22 2014, 17:43.
update program, coupler tests and examples to use new features of dfpm solver
6c35d421db39
·fabien on Oct 22 2014, 17:41.
better scaling and velocity handling
a2c41c6968cc
·fabien on Oct 22 2014, 17:39.

Oct 21 2014

lots of small corrections
7009d71a1296
·fabien on Oct 21 2014, 21:38.
modify jacobian computation in electroneutrality program
0e24a03b71fa
·fabien on Oct 21 2014, 21:35.
add scaling to dfpmsolver
6bc8e317a3ae
·fabien on Oct 21 2014, 21:33.

Oct 20 2014

add electroneutrality transport program
ab2944bc8002
·fabien on Oct 20 2014, 23:03.
add minimal support for quasi Newton iterations in parabolic solver
dd35febf8e48
·fabien on Oct 20 2014, 22:54.
add strang linesearch into parabolic driver
e64992a2bc6c
·fabien on Oct 20 2014, 16:28.

Oct 15 2014

start work on a the transport oslver with neutrality
e882181496b7
·fabien on Oct 15 2014, 23:16.

Oct 10 2014

adapt reduce_system_Solver to allow minerals that can't dissolve
f42f76860daf
·fabien on Oct 10 2014, 20:07.
add support for not dissolving/not precipitating minerals in database
4607780abc35
·fabien on Oct 10 2014, 19:51.

Oct 9 2014

reduce header dependancy
9ac10ec69a99
·fabien on Oct 9 2014, 04:39.
add again the contribution of the descent step direction, change dection of…
e72e464ed90b
·fabien on Oct 9 2014, 03:31.
use typedef
69f1f340a8f5
·fabien on Oct 9 2014, 02:43.

Oct 8 2014

add example directory
da3d68efcce0
·fabien on Oct 8 2014, 22:06.
correct name of reactmicp test folder to tests/reactmicp
afebadac83de
·fabien on Oct 8 2014, 20:21.
add axissymmetric mesh 1d, one file per mesh, add reactmicp/mesh.hpp
a3fe40ba7210
·fabien on Oct 8 2014, 20:19.
correct type in safeguard
d7e3744afdfe
·fabien on Oct 8 2014, 16:57.
Prepare mesh module for asymmetric mesh
a82ae4d34189
·fabien on Oct 8 2014, 16:57.
add transport options into reactive transport options
dbcf1c3de1b8
·fabien on Oct 8 2014, 16:45.
detect linesearch failure in MiCPSolver, which allow restart in…
e5216c0292f7
·fabien on Oct 8 2014, 16:34.

Oct 6 2014

delete previous files added by mistake
a70d03795fe6
·fabien on Oct 6 2014, 21:17.
Merge branch 'reactivetransport' of bitbucket.org:fabieng/specmicp into…
48eb4f5d4263
·fabien on Oct 6 2014, 21:14.
update database, micpsolver and specmicp to use common.hpp
c7ac0a493911
·fabien on Oct 6 2014, 21:13.
update database, micpsolver and specmicp to use common.hpp
032d87790f74
·fabien on Oct 6 2014, 21:11.
modify reactmicp and dfpmsolver to use common.hpp
c46a22fd727b
·fabien on Oct 6 2014, 19:19.
modify equilibrium data so it uses the new common.hpp
a04acf96600a
·fabien on Oct 6 2014, 15:31.
add common.hpp, modify database module to use it
eb7779e20fdf
·fabien on Oct 6 2014, 15:30.

Oct 3 2014

add cmakefile in directory test
191d56f41074
·fabien on Oct 3 2014, 16:28.
remove unecessary files
e5484eae1665
·fabien on Oct 3 2014, 00:36.
improve fixed-point iteration solver
1461da1319e9
·fabien on Oct 3 2014, 00:30.

Oct 1 2014

SIA reactive transport start to work
83e1af765087
·fabien on Oct 1 2014, 19:37.
add scaling method in EquilibriumState
f0bae6f199e0
·fabien on Oct 1 2014, 19:34.
add method to compute residuals from outside, and adjust logging message
48743d675901
·fabien on Oct 1 2014, 19:33.

Sep 28 2014

start working on BCs and ther applications
49aeec52193c
·fabien on Sep 28 2014, 23:38.
update and coupling utils in SIASaturatedVariables
a68894083238
·fabien on Sep 28 2014, 20:16.

Sep 26 2014

add residuals and update norms in performance for parabolic solver
eebb86eba7d7
·fabien on Sep 26 2014, 19:40.
add residual and update norm in performance for micpsolver
35e7d8aacfae
·fabien on Sep 26 2014, 19:39.
allow the non-conservation of water in reaction_path/reduce_system
6110aa030886
·fabien on Sep 26 2014, 16:44.
dfpmsolver, and saturated_diffusion program can be solved
8342bd67907c
·fabien on Sep 26 2014, 02:27.

Sep 25 2014

start working on SIA solver
b5fde6377526
·fabien on Sep 25 2014, 05:00.
reactive transport - fully implicit ... does not work
f1c39bf54729
·fabien on Sep 25 2014, 01:31.

Sep 24 2014

towards a correct code ?
90597818e3ba
·fabien on Sep 24 2014, 15:23.

Sep 21 2014

it works \o/
68b7dab0dd3d
·fabien on Sep 21 2014, 21:01.
add a few methods to EquilibriumState
26456e9e2cd2
·fabien on Sep 21 2014, 21:00.
Correct bug in ionic strength computation in Reducedsystem
8a4ab92c89b3
·fabien on Sep 21 2014, 20:54.

Sep 11 2014

MiCPParabolicSolver runs, does not solve anything
8659642b7a98
·fabien on Sep 11 2014, 22:49.

Sep 10 2014

correction of bugs due to merging, also use new database range_* function in…
141e6db490b4
·fabien on Sep 10 2014, 03:54.
Merge branch 'reactivetransport'
fe4a3c6ffe37
·fabien on Sep 10 2014, 03:39.

Historyoxydoreduc225e2990dde6d76769ea1c8…

Nov 21 2014

Nov 20 2014

Nov 19 2014

Nov 18 2014

Nov 17 2014

Nov 16 2014

Nov 13 2014

Nov 11 2014

Nov 7 2014

Oct 28 2014

Oct 26 2014

Oct 25 2014

Oct 22 2014

Oct 21 2014

Oct 20 2014

Oct 15 2014

Oct 10 2014

Oct 9 2014

Oct 8 2014

Oct 6 2014

Oct 3 2014

Oct 1 2014

Sep 28 2014

Sep 26 2014

Sep 25 2014

Sep 24 2014

Sep 21 2014

Sep 11 2014

Sep 10 2014

History
oxydoreduc225e2990dde6d76769ea1c8…