Diffusion tamaas (master) History

History
master6f1bb5d3d5cee9148a56c3a…

Dec 8 2020

added helper function to convert hdf5 model dump to VTK
6f1bb5d3d5ce
·frerot on Dec 8 2020, 19:45.
uniform debug messages with TAMAAS_DEBUG_MSG macro
83b12befa682
·frerot on Dec 8 2020, 17:16.
raising exception if scipy solvers are used with MPI
f739905b88d2
·frerot on Dec 8 2020, 17:04.
use uvw.RectilinearGrid instead of parallel variant
09b1019f9242
·frerot on Dec 8 2020, 17:03.

Dec 7 2020

adding has_mpi to TamaasInfo class
09634dfd5d9d
·frerot on Dec 7 2020, 18:06.

Dec 5 2020

added tolerance on components tests
d9c3d9f292da
·frerot on Dec 5 2020, 00:14.

Dec 4 2020

raising when NumpyDumper is called in parallel
1af5c7f89584
·frerot on Dec 4 2020, 22:28.
prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.
added type traits to python interface
b4ec536528a2
·frerot on Dec 4 2020, 19:59.

Dec 2 2020

added convenience size/rank to mpi bindings
cce181f1da1f
·frerot on Dec 2 2020, 00:07.

Dec 1 2020

changed tm.to_voigt uses to tm.compute.to_voigt
90e419eb7a0a
·frerot on Dec 1 2020, 22:35.
moved mpi function bindings to their own submodule
f9fadc483c40
·frerot on Dec 1 2020, 21:44.
fixing fftwmpi tests
efd5776aa2c0
·frerot on Dec 1 2020, 21:23.
testing parallel pkr with hertz instead of sequential pkr
4022e3acd5e6
·frerot on Dec 1 2020, 21:23.
making an fftengine on the fly in stats functions
24b0fa8bbc51
·frerot on Dec 1 2020, 21:14.
added wrapping of local_{size,offset} partitioner functions
3503d740b538
·frerot on Dec 1 2020, 21:13.

Nov 27 2020

added some debug log messages
e290de0838e8
·frerot on Nov 27 2020, 17:52.

Nov 25 2020

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
·frerot on Nov 25 2020, 21:35.
adjusting mpi tests
14f13ab72ad0
·frerot on Nov 25 2020, 21:31.
added experimental mpi warning
f5786e6cbeff
·frerot on Nov 25 2020, 21:29.
added backwards fft 2d tests (counterpart of mpi test)
945eedca11ad
·frerot on Nov 25 2020, 21:28.

Oct 23 2020

added a function to compute deviatoric of sym tensor fields
54aab33e784a
·frerot on Oct 23 2020, 21:58.

Sep 3 2020

turn on flag TAMAAS_USE_PYTHON
eeeb65577eff
·frerot on Sep 3 2020, 23:28.
adjusting tolerance of test FFT1D2Comp
671a3a805986
·frerot on Sep 3 2020, 23:15.

Sep 1 2020

rename USE_MPI to TAMAAS_USE_MPI
a18819dd25e3
·frerot on Sep 1 2020, 23:26.
Merge branch 'master' into feature/mpi_fft_engine
ddb30ba41df9
·frerot on Sep 1 2020, 23:22.

Aug 31 2020

removed useless operator= for ToleranceManager
0f3eef3f390e
·frerot on Aug 31 2020, 21:15.
silenced warnings about deprecated copy ctors
5e6c40b035b2
·frerot on Aug 31 2020, 19:00.
linking with libpython${version} to test_gtest_all
5471cb70c676
·frerot on Aug 31 2020, 18:22.

Aug 13 2020

added helper method to compute (corrected) contact areas
c9eb34ff4665
·frerot on Aug 13 2020, 17:15.

Aug 8 2020

[DOC] refreshed description of installtion with pip
19806151094f
·tag: v2.1.4
·frerot on Aug 8 2020, 01:23.
prefer this email
3838c1d4ac9d
·frerot on Aug 8 2020, 01:04.
changes to setup.py to build python 2 wheels
f59e8b7c2de2
·frerot on Aug 8 2020, 00:16.

Aug 7 2020

fixing errors for python 2
69c13358055d
·frerot on Aug 7 2020, 22:56.
making sure libTamaas is linked first
87df0438ac11
·frerot on Aug 7 2020, 20:21.

Aug 6 2020

updating emails and refreshing pipe_tools
bb36f61af70a
·frerot on Aug 6 2020, 23:54.
adding a backwards transform test
32f729beef69
·frerot on Aug 6 2020, 01:26.
allowing other fftw flags in mpi engine
80617eef9978
·frerot on Aug 6 2020, 01:24.
reducing float test tolerance to 4ε
9d631430e38f
·frerot on Aug 6 2020, 01:22.

Aug 5 2020

[DOC] added dependencies to generate doc for dumpers and solvers
fc7139c685e4
·frerot on Aug 5 2020, 21:03.
overwrite netcdf file on first dump
87299a2f0e72
·frerot on Aug 5 2020, 20:36.
creating variables with right dimensions in netcdf dumper
555b9d18b1d5
·frerot on Aug 5 2020, 20:27.

Aug 4 2020

netcdf dumper now writes frames to a single file
357aabe906d0
·frerot on Aug 4 2020, 23:02.
matching documentation version to tamaas' version number
af71e726e2e4
·frerot on Aug 4 2020, 20:10.
laxer detection of Thrust headers
78c0e4b6a293
·frerot on Aug 4 2020, 17:33.

Aug 3 2020

[DOC] adding paragraph on integration methods
4281604d9e17
·frerot on Aug 3 2020, 22:26.
Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
testing all non-linear solvers in plasticity patch test
65b794bf9f7b
·frerot on Aug 3 2020, 21:27.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
added tolerance manager to plasticity example
498377ca55e4
·frerot on Aug 3 2020, 21:19.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.
avoid duplication of -fPIC flag
e1de40e29467
·frerot on Aug 3 2020, 16:09.
checking all variants of FFTW when requested
b4d19b07637b
·frerot on Aug 3 2020, 16:07.

Aug 2 2020

allowing compilation without OpenMP
d6d8134e1bba
·frerot on Aug 2 2020, 02:07.

Aug 1 2020

tentative implementation of DFSANESolver
cf36e15d08a3
·frerot on Aug 1 2020, 01:42.

Jul 31 2020

prettier compilation outputs in non-verbose mode
d38b418143c0
·frerot on Jul 31 2020, 22:17.

Jul 30 2020

[DOC] correct formatting of nested lists
83e7b905b82d
·frerot on Jul 30 2020, 18:57.
added shield(s.io) to c4science project page
5417ce428c72
·frerot on Jul 30 2020, 18:13.

Jul 29 2020

[DOC] added tamaas python package as requirement
b872df23a6a3
·frerot on Jul 29 2020, 18:40.
avoiding circular imports
8db558711c4c
·frerot on Jul 29 2020, 18:31.
renamed packaging_setup option to build_static_lib
cbe79569b127
·frerot on Jul 29 2020, 16:29.
packaging setup now generates static libTamaas
77e32d9a06e7
·frerot on Jul 29 2020, 03:21.

Jul 28 2020

[JOSS] added missing DOI for Archard (1957)
1730c72ac54f
·tag: joss_published_v1
·frerot on Jul 28 2020, 19:52.
[DOC] uniformizing titles and descriptions of Tamaas
4fe90e4e93ed
·frerot on Jul 28 2020, 16:16.
[DOC] adding various badges
5834c8d64134
·frerot on Jul 28 2020, 15:53.
[DOC] adding Zenodo DOI badge
e88a7c32b543
·frerot on Jul 28 2020, 00:19.
adding $ORIGIN to libTamaas RPATH
9114496fb1c5
·frerot on Jul 28 2020, 00:19.
compatibility with scons+py3
be792b1b623b
·frerot on Jul 28 2020, 00:06.

Jul 27 2020

[DOC] changed recursion option in clone command
a7ab3aa00176
·frerot on Jul 27 2020, 21:14.
[JOSS] added mobility grant acknowledgement
4a571e58e8cf
·frerot on Jul 27 2020, 18:22.
wrapping version number in python
90ef0739a009
·tag: v2.1.3
·frerot on Jul 27 2020, 18:03.
adding reference to JOSS in README
97069ca3612b
·frerot on Jul 27 2020, 17:52.
adding version number to tamaas info
d200a63e05b6
·frerot on Jul 27 2020, 17:36.
prepending base directory in generated archive
94cbcda343ca
·frerot on Jul 27 2020, 17:24.
added skeleton for DFSANE C++ solver
6a23416b0bff
·frerot on Jul 27 2020, 17:15.
[JOSS] updated affilations
8abe9888a652
·frerot on Jul 27 2020, 17:12.
[DOC] added more details to quickstart page
3ad31bc2ad53
·frerot on Jul 27 2020, 17:12.

Jul 24 2020

modifiying python install scripts for a PyPI tamaas package
0f1bae08aea7
·tag: v2.1.2
·frerot on Jul 24 2020, 21:13.
log warning instead of exception for possible overflow in kelvin
022c85aa37f2
·frerot on Jul 24 2020, 17:25.

Jul 22 2020

[DOC] clearer headings for contributing
1732bd341beb
·frerot on Jul 22 2020, 16:31.
relaxing threshold in patch plasticity test
ba57121986ad
·frerot on Jul 22 2020, 14:03.
not flattening arrays in netcdf dumper
af08c7abcf2c
·frerot on Jul 22 2020, 14:02.
allow pickles in numpy dumper test (default changed in 1.16.1)
10e89fb76a8c
·frerot on Jul 22 2020, 14:02.

Jul 21 2020

[DOC] added examples and performance pages
673fed723981
·frerot on Jul 21 2020, 20:42.
[Examples] added titles to figures
98cd1f0b041c
·frerot on Jul 21 2020, 20:36.
[DOC] moved quickstart to its own page
b92de062a308
·frerot on Jul 21 2020, 15:31.

Jul 17 2020

using global datasize/nbpoints functions when needed
e51c229537c2
·frerot on Jul 17 2020, 21:04.
testing PolonskyKeerRey in MPI
41cf38d51bcf
·frerot on Jul 17 2020, 19:24.

Jul 16 2020

addind test for mpi model creation
a7af53db8efa
·frerot on Jul 16 2020, 04:57.
allowing runs of several mpi routine tests
4921b6ec6a4c
·frerot on Jul 16 2020, 04:55.

Jul 15 2020

proper singleton for mpi::comm::world ensures working seq_guard
a9660ef02eed
·frerot on Jul 15 2020, 21:56.

Jul 14 2020

initializing model with local MPI sizes
9b70d3fba43f
·frerot on Jul 14 2020, 20:24.

Jul 12 2020

upgrading dockerfile and jenkinsfile for mpi tests
fa4fef35f40f
·frerot on Jul 12 2020, 17:32.
fixing sequential context manager
6f8537513eca
·frerot on Jul 12 2020, 17:24.
protected gtests that need to be run in sequential with guard
0e475acfc2fe
·frerot on Jul 12 2020, 14:13.
added mpi::sequential_guard
254daee554df
·frerot on Jul 12 2020, 14:12.
added mpi4py as dependency
0c9ddfa242f4
·frerot on Jul 12 2020, 03:59.
proper testing of mpi-enabled routines in python
cb2acaf61c4c
·frerot on Jul 12 2020, 03:59.
allowing 1D tests to pass
773514f8cf45
·frerot on Jul 12 2020, 02:59.
added a sequential context manager
ea6e316a0703
·frerot on Jul 12 2020, 01:30.

Historymaster6f1bb5d3d5cee9148a56c3a…

Dec 8 2020

Dec 7 2020

Dec 5 2020

Dec 4 2020

Dec 2 2020

Dec 1 2020

Nov 27 2020

Nov 25 2020

Oct 23 2020

Sep 3 2020

Sep 1 2020

Aug 31 2020

Aug 13 2020

Aug 8 2020

Aug 7 2020

Aug 6 2020

Aug 5 2020

Aug 4 2020

Aug 3 2020

Aug 2 2020

Aug 1 2020

Jul 31 2020

Jul 30 2020

Jul 29 2020

Jul 28 2020

Jul 27 2020

Jul 24 2020

Jul 22 2020

Jul 21 2020

Jul 17 2020

Jul 16 2020

Jul 15 2020

Jul 14 2020

Jul 12 2020

History
master6f1bb5d3d5cee9148a56c3a…