Diffusion tamaas (master) History

History
masterf815d803f86912494c1f00d…

Jun 16 2021

Merge branch 'master' into features/netcdf-mpi
f815d803f869
·frerot on Jun 16 2021, 02:06.

Jun 15 2021

[ci] correct verbose flag for twine
f9a64f324845
·tag: v2.3.0
·frerot on Jun 15 2021, 22:18.
[ci] only deploying wheels when tests are passing
fe4baf6011aa
·frerot on Jun 15 2021, 21:51.
[ci] activate wheels build on tag
05b51c6db299
·frerot on Jun 15 2021, 21:28.
[ci] moving wheels step to build
dd5bfe56473c
·frerot on Jun 15 2021, 20:14.
[ci] setup continuous delivery
a26e113c41ca
·frerot on Jun 15 2021, 18:54.

Jun 11 2021

[ci] keeping tests logs
96560b231bb5
·frerot on Jun 11 2021, 22:21.
migrated repository to gitlab
79355c2aefe7
·frerot on Jun 11 2021, 21:08.

Jun 10 2021

[ci] fixed wrongly placed post{} + cleanup
e9062e2f90fd
·frerot on Jun 10 2021, 23:45.
cleaned up license headers
1fc7644bad52
·frerot on Jun 10 2021, 22:30.
[ci] indentation
f4302c1266be
·frerot on Jun 10 2021, 00:07.

Jun 9 2021

[ci] removed node
e51cb6a111e9
·frerot on Jun 9 2021, 23:32.
[ci] moved node in stages
d6be11d5e367
·frerot on Jun 9 2021, 23:29.
[ci] trying to use nodes
468043414b64
·frerot on Jun 9 2021, 23:26.
[ci] always upload artifacts
f3a409f8261b
·frerot on Jun 9 2021, 23:22.
[ci] changed hbm command names
ae683ba73eaa
·frerot on Jun 9 2021, 22:37.
[ci] restablished debian image for docker
9fe244aa2311
·frerot on Jun 9 2021, 22:17.
[ci] logging and archiving test results
a53ea126d89c
·frerot on Jun 9 2021, 19:30.
[ci] added libopenmpi-dev to docker image
e54b07ea498d
·frerot on Jun 9 2021, 18:20.
stop compile if basic checks are not satisfied
abfdd8cd28b0
·frerot on Jun 9 2021, 18:09.
[ci] trying different technique to save artifacts
63dab2b443c2
·frerot on Jun 9 2021, 18:04.
[ci] also saving artifacts in jenkins
dd81cd4ff6c0
·frerot on Jun 9 2021, 17:59.
[ci] correct subcommands names
ecc1eaeea050
·frerot on Jun 9 2021, 17:52.
trying to fix jenkins by fixing dependency resolution order and locales
249346cbbecf
·frerot on Jun 9 2021, 17:48.
[doc] using full `numpy` name instead of `np`
1ab45bfb8b10
·frerot on Jun 9 2021, 17:31.
added more docstrings
e76bb9e66413
·frerot on Jun 9 2021, 17:26.
using a cuda-enabled docker image
b4f0f816450c
·frerot on Jun 9 2021, 16:36.
added docstrings to some python function bindings
1de4d8b950ca
·frerot on Jun 9 2021, 16:35.

Jun 2 2021

compiling tests with cuda
de1480b0e7ae
·frerot on Jun 2 2021, 20:39.

Jun 1 2021

correctly computing contact area in mpi context
cdc6ac1a08f9
·frerot on Jun 1 2021, 00:04.

May 31 2021

corrected includes for cpp tests
3d1b4c64338f
·frerot on May 31 2021, 16:55.
re-established sort order for eigenvalues
c36392a99574
·frerot on May 31 2021, 16:54.

May 29 2021

removing remnants of fftw's interface
fd9661c88813
·frerot on May 29 2021, 20:36.
added experimental cuda warning
7faf5c9d3692
·frerot on May 29 2021, 20:13.

May 28 2021

not linking against fftw if cuda is used
0ae1a96db417
·frerot on May 28 2021, 22:59.
reorganized fftw files in their own directory
d1dc26e4556a
·frerot on May 28 2021, 21:31.
cosmetic changes to compile command output
4f55fed67f6d
·frerot on May 28 2021, 19:56.
Merge branch 'master' into features/cuda
fde6a532b8a1
·frerot on May 28 2021, 19:40.
always compiling mpi_interface.cpp
2baa944ac358
·frerot on May 28 2021, 19:40.
making the whole library compile with cuda
0257e3cb2f4e
·frerot on May 28 2021, 17:15.
fft engine for cuda
6b9140c22c9b
·frerot on May 28 2021, 05:39.

May 27 2021

more progress to have tamaas compile with nvcc
cb90433efaab
·frerot on May 27 2021, 22:23.

May 26 2021

[doc] spacing bullet list items
12d9012653a6
·frerot on May 26 2021, 18:26.
removing dirty tag in sphinx version string
5a30f4e328d1
·frerot on May 26 2021, 16:16.

May 25 2021

ensuring uniform surface generator seed accross processes
7e692627014a
·frerot on May 25 2021, 18:14.

May 19 2021

more compatibility with cuda
0f189d10cd98
·frerot on May 19 2021, 21:54.
manually sorting eigenvalues instead of thrust::sort
31f5a4526a6e
·frerot on May 19 2021, 20:14.
using cuda-compatible exchange function instead of std::exchange
c159445c87fb
·frerot on May 19 2021, 20:14.
avoiding pointless comparison with 0 warning
227f8de0a319
·frerot on May 19 2021, 20:13.
__device__, __host__, CUDA_LAMBDA annotations
b2df7a0d87de
·frerot on May 19 2021, 20:12.
compatibility changes to cuda in scons
c75736b11338
·frerot on May 19 2021, 20:10.

May 17 2021

[doc] fixed typo
7d0f66532e72
·frerot on May 17 2021, 20:44.
white background on icon
465a89c730fa
·frerot on May 17 2021, 20:30.

May 13 2021

displaying log level + debug logs in tamaas.cpp
751788025682
·frerot on May 13 2021, 21:50.

May 12 2021

removed useless submodule
baa09fd29fec
·frerot on May 12 2021, 18:26.

May 10 2021

refreshed README
4d5ce89278a3
·frerot on May 10 2021, 22:02.

May 7 2021

adding type annotations and using f-strings for dumpers
3557cd97a518
·frerot on May 7 2021, 04:29.

May 3 2021

[doc] cleaner svg for icon
e314b0e08222
·frerot on May 3 2021, 20:22.

May 1 2021

Merge commit '5fb8ae5d77dd1b26fb4cfacdb5bdb5b9c04fedbe' as 'third-party/expolit'
e17945d25c88
·frerot on May 1 2021, 05:12.
Squashed 'third-party/expolit/' content from commit 5f68da4
5fb8ae5d77dd
·frerot on May 1 2021, 05:12.
removed expolit submodule
a88f9910b09d
·frerot on May 1 2021, 05:11.
storing .versionneer.cfg in versioneer.py
7ca61a61511c
·frerot on May 1 2021, 05:05.
using git to create tarball archive
d3dfb81c535e
·frerot on May 1 2021, 05:00.
using fallback ConfigParser in versioneer
5456fcac574e
·frerot on May 1 2021, 01:07.
using versionneer to manage version numbers
bb4c6112532f
·frerot on May 1 2021, 00:58.

Apr 29 2021

pretty printing archive command
1cdb4a1c9578
·frerot on Apr 29 2021, 17:35.
pretty printing secondary scons commands (tests + install)
5c88b7c45e1a
·frerot on Apr 29 2021, 17:27.

Apr 28 2021

better use of fixtures in tests
b56f89b4dba1
·frerot on Apr 28 2021, 16:10.

Apr 27 2021

test_patch_westergaard now tests all applicable model types
99aeeb8af4ed
·frerot on Apr 27 2021, 18:03.
fixed order of inputs in Model::solveDirichlet
d6c631e7cf83
·frerot on Apr 27 2021, 18:02.
removed legacy bem grid test file
d5841e5c2852
·frerot on Apr 27 2021, 00:02.
integrated autocorrelation test into test_surface
73019bea551e
·frerot on Apr 27 2021, 00:01.

Apr 26 2021

forgot `import os`
7fc91b79d964
·frerot on Apr 26 2021, 16:33.
better handling of file descriptors in JSONDumper
287cf88791d0
·frerot on Apr 26 2021, 16:15.
marking test_epic and westergaard_multi as xfail if backend == 'tbb'
93a4d5811ae9
·frerot on Apr 26 2021, 05:22.
cleaned up test fixtures (using parameter names)
4dbc3ee00066
·frerot on Apr 26 2021, 04:31.

Apr 25 2021

testing UVW writes
3438ff37dbe4
·frerot on Apr 25 2021, 23:48.
added JSON dumping capability and fixed dump issues ∀ model types
0d37c22cb392
·frerot on Apr 25 2021, 23:37.
using pathlib instead of os.path in dumpers
a5ad130c558f
·frerot on Apr 25 2021, 19:30.

Apr 20 2021

mpi-compatible implementation of getClusters()
64e101c13b91
·frerot on Apr 20 2021, 21:23.

Apr 19 2021

allowing model read from HDF5 with MPI
86e5cb1e1789
·frerot on Apr 19 2021, 20:09.

Apr 17 2021

added read method to NetCDFDumper
97bffadf7b6a
·frerot on Apr 17 2021, 01:04.
added sequential read function to H5Dumper
0ba6912bc122
·frerot on Apr 17 2021, 00:21.

Apr 16 2021

added read method to FieldDumper (raises RuntimeError)
0fad580005ff
·frerot on Apr 16 2021, 23:04.
added read() method to NumpyDumper
da270d6f9606
·frerot on Apr 16 2021, 22:55.

Apr 15 2021

tentative parallel implementation of NetCDFDumper
b3bc153777cb
·frerot on Apr 15 2021, 23:37.

Apr 6 2021

corrected description of `tamaas` command
d088bf7abd63
·frerot on Apr 6 2021, 20:39.
writing surface info in text header instead of numpy file
b4d5adb73bc8
·frerot on Apr 6 2021, 20:32.
added dump option to `surface` command
67d6e4dc8646
·frerot on Apr 6 2021, 18:12.

Apr 5 2021

[doc] formatting in changelog
f13f8cf7202b
·frerot on Apr 5 2021, 20:36.
silencing warning about missing uvw package
9c33983aed18
·frerot on Apr 5 2021, 17:17.

Apr 2 2021

bumping version number to 2.2.2
128ac546c267
·tag: v2.2.2
·frerot on Apr 2 2021, 21:57.
[doc] changing man section number to 7
b19adf7440cd
·frerot on Apr 2 2021, 21:53.
[doc] formatting
17b6d5bd4eb1
·frerot on Apr 2 2021, 19:49.
[doc] describing entry point `tamaas` command
9578f56e3c51
·frerot on Apr 2 2021, 17:34.
added an entry point `tamaas` with three sub-commands
6a713f330f44
·frerot on Apr 2 2021, 17:19.

Mar 20 2021

[doc] silencing warnings when generating documentation
6c56b69be4a2
·frerot on Mar 20 2021, 00:57.
[doc] allowing selection of sphinx doc builders
e6092ae873a1
·frerot on Mar 20 2021, 00:38.
[doc] converting svg for latex sphinx
e28a7d62ce74
·frerot on Mar 20 2021, 00:37.

Mar 17 2021

using env.subst instead of format
998dbf9a8e3a
·frerot on Mar 17 2021, 22:31.

Historymasterf815d803f86912494c1f00d…

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History
masterf815d803f86912494c1f00d…