Diffusion tamaas (petsc) History

History
petsc7b96a49f1c3e0847be26a60…

Apr 13 2022

[doc] using system imagemagick in RTD
7b96a49f1c3e
·frerot on Apr 13 2022, 15:53.
[doc] added some documentation on how to use MPI
c3fd65b80bf5
·frerot on Apr 13 2022, 15:03.
better render of scaling plot in doc
9e8d3742735c
·frerot on Apr 13 2022, 13:55.
added python3-h5py-mpi to Docker image
6973f0ebe85c
·frerot on Apr 13 2022, 11:21.

Apr 7 2022

installing imagemagick in ReadTheDocs
4278fed63fde
·frerot on Apr 7 2022, 16:38.
Merge branch 'master' of gitlab.com:tamaas/tamaas
95e0fd5ce8a9
·frerot on Apr 7 2022, 10:17.
added python constructor for Model
f9607922e458
·frerot on Apr 7 2022, 10:03.

Apr 6 2022

defining return types for scatter and gather
d66fc61e74f0
·Lucas Frérot on Apr 6 2022, 22:54.
fixed return policy for scatter and gather bindings
68395442fa89
·frerot on Apr 6 2022, 18:35.
Merge branch 'features/distribute' into 'master'
c99a4cb9feb3
·Lucas Frérot on Apr 6 2022, 17:58.
added tamaas.mpi.scatter and tamaas.mpi.gather
f6c88495cce5
·frerot on Apr 6 2022, 17:22.

Apr 5 2022

added tamaas.utils.publications to print relevant publications
3901c186d1d1
·frerot on Apr 5 2022, 13:43.
fixing warnings in examples
9a13073aadb7
·frerot on Apr 5 2022, 13:31.

Mar 22 2022

removed stray print in zenodo.py
1ec57adb4a77
·frerot on Mar 22 2022, 11:06.
updated changelog with version 2.4.0
9a0b47c737c0
·tag: v2.4.0
·frerot on Mar 22 2022, 10:19.
[ci] using debian stable image for zenodo step
071fecd8cb41
·tag: v2.4.0rc1
·frerot on Mar 22 2022, 09:44.

Mar 21 2022

[ci] added stage to draft new zenodo release
3967641eb149
·tag: v2.3.2rc1
·frerot on Mar 21 2022, 16:44.
deleting old files in zenodo draft
3ac1070eb4fc
·frerot on Mar 21 2022, 16:12.
added zenodo script to create new zenodo releases
0d26241b3a23
·frerot on Mar 21 2022, 16:02.
can execute INFOS.py to get version
9c468c5ff329
·frerot on Mar 21 2022, 16:01.
setting strip_info=True by default
67c3aba76431
·frerot on Mar 21 2022, 11:55.
added a read_sequence method to read data frames
932a5e9b9558
·frerot on Mar 21 2022, 11:55.

Mar 17 2022

prioritizing system packages instead of vendored dependencies
d3bb19ec4c8d
·frerot on Mar 17 2022, 10:09.
uniformized behavior of PYBIND11_ROOT compared to *_ROOT variables
e0d715877c62
·frerot on Mar 17 2022, 10:08.
added funding sources to README
6c782a463c64
·frerot on Mar 17 2022, 09:37.

Mar 16 2022

[ci] correct path for pybind11 headers in manylinux image
86dc241245c5
·frerot on Mar 16 2022, 17:30.
[ci] including vendored dependencies in ci images
4136befc50e4
·frerot on Mar 16 2022, 17:17.
refreshed dumpers private API
00e5015563d2
·frerot on Mar 16 2022, 13:38.

Mar 10 2022

linting
2dc673a45540
·frerot on Mar 10 2022, 18:30.
added generator of surfaces from a sequence of seeds
8b1f18b91b90
·frerot on Mar 10 2022, 10:54.
warning when setting generator seed < 1
f81b266df32a
·frerot on Mar 10 2022, 10:53.

Mar 7 2022

[doc] typo in README
694fe99a4656
·frerot on Mar 7 2022, 17:31.
[doc] silencing all remaining breathe warnings
6ee388e0b92d
·frerot on Mar 7 2022, 16:29.
[doc] silencing sphinx warnings about duplicate targets for links
0ed5bb2c991e
·frerot on Mar 7 2022, 15:31.
[doc] cleaned up API auto documentation
d4e72444f397
·frerot on Mar 7 2022, 11:14.
[doc] silencing a lot of breathe warnings
872ffdeaa9da
·frerot on Mar 7 2022, 11:00.

Mar 3 2022

simplified member functions in nonlinear_solvers
161d5979b7fc
·frerot on Mar 3 2022, 17:45.
added deep-copy functionality for Model objects
a32fd3ed3a84
·frerot on Mar 3 2022, 12:40.

Mar 2 2022

[doc] added documentation for utils module
94d9ff2f1a64
·frerot on Mar 2 2022, 15:54.

Mar 1 2022

linting
abda169fde82
·frerot on Mar 1 2022, 15:27.
added a from_voigt compute function
b3d7958eb0de
·frerot on Mar 1 2022, 15:11.
added tamaas.utils which contains some QOL functions
6885f6dd2d1e
·frerot on Mar 1 2022, 15:10.
[doc] docstrings in __main__.py
4ba31ed94a65
·frerot on Mar 1 2022, 14:41.

Jan 19 2022

updated email
e960a422ffd5
·frerot on Jan 19 2022, 14:20.

Jan 4 2022

updated copyright
2b24d9d43e38
·frerot on Jan 4 2022, 10:40.

Dec 23 2021

correcting some type conversion warnings
5c5c408a3174
·frerot on Dec 23 2021, 23:32.

Dec 18 2021

corrections from clang-tidy
f8c5f763f07f
·frerot on Dec 18 2021, 19:11.

Dec 15 2021

added -pthread flag to test linking
c80f58ccea73
·frerot on Dec 15 2021, 21:51.

Nov 25 2021

[doc] adding favicon
1e3b8f290cfc
·frerot on Nov 25 2021, 18:06.

Nov 23 2021

regenerating tamaas_info.cpp on changes in version
2928a8bfb65a
·frerot on Nov 23 2021, 12:06.
fixed issue with scons -c
7978874b3c1c
·frerot on Nov 23 2021, 12:06.

Nov 17 2021

ignoring modules in ~/.local in the Docker/Singularty container
0cb8ab8fb1e8
·frerot on Nov 17 2021, 13:09.

Nov 8 2021

[ci] skip wheels upload if they already exist
97462bc30403
·frerot on Nov 8 2021, 13:19.
Updated CHANGELOG
828c431ef723
·tag: v2.3.1
·frerot on Nov 8 2021, 11:50.

Nov 5 2021

Merge branch 'master' of gitlab.com:tamaas/tamaas
8e89eecca012
·frerot on Nov 5 2021, 09:25.
[ci] using the "latest" tag with master branch
d3950259266b
·frerot on Nov 5 2021, 09:24.

Nov 4 2021

added libopenmpi-dev as explicit dependency in Dockerfile
2236186706e8
·frerot on Nov 4 2021, 20:18.
[doc] added documentation for gitlab docker image
dc3cebc28fba
·frerot on Nov 4 2021, 18:13.
[ci] activating MPI for deployed docker images
2397fd6b5995
·frerot on Nov 4 2021, 18:12.
[ci] added generation of docker images in CI
024f08900431
·frerot on Nov 4 2021, 17:08.
stripped useless dependencies in the docker image
cfd58ff41a02
·frerot on Nov 4 2021, 16:47.
gracefully fail 'plot' if matplotlib is missing
9afe65f91937
·frerot on Nov 4 2021, 16:46.
cleaned up definition of docker image
964ceae882c8
·frerot on Nov 4 2021, 16:07.
more robust testing if field is a boundary field
559faac5412a
·frerot on Nov 4 2021, 14:27.

Nov 2 2021

[doc] correct copyright string
3857b0102358
·frerot on Nov 2 2021, 16:33.
distutils is deprecated
916a6e0bb19d
·frerot on Nov 2 2021, 16:33.

Aug 21 2021

[ci] updated bear call for bullseye
d117f6ded976
·frerot on Aug 21 2021, 00:26.

Aug 20 2021

python linting
fc069823b134
·frerot on Aug 20 2021, 23:52.

Aug 4 2021

added a `--version` flag to the tamaas command
5871c9edfbdb
·frerot on Aug 4 2021, 19:58.

Jul 23 2021

[doc] reformatting lists in rst files
a4e90af9ca72
·frerot on Jul 23 2021, 20:42.
pinned sphinx & friends versions
93fd09752bd7
·frerot on Jul 23 2021, 17:45.

Jul 20 2021

[ci] correcting build artifacts
dc9656d4c667
·frerot on Jul 20 2021, 22:22.
[ci] correct build artifacts
b86675be3c88
·frerot on Jul 20 2021, 22:10.
[ci] using quotes
abe5af88a8fd
·frerot on Jul 20 2021, 22:02.
[ci] corrected yaml syntax
d94480026e78
·frerot on Jul 20 2021, 21:18.
added linting with clang-tidy & lint corrections
ad9b3ca44951
·frerot on Jul 20 2021, 21:15.
fixed changelog
9b9d67c5e9e6
·frerot on Jul 20 2021, 16:20.
[ci] using quotes
483b0d63989b
·frerot on Jul 20 2021, 14:45.
[ci] inverting exit code on flake test
f7cd9080a63f
·frerot on Jul 20 2021, 05:01.
[ci] using flake8 from pypi instead of debian
924196b3e6c3
·frerot on Jul 20 2021, 02:10.
[ci] using flake8 for linting of python code
7eab7018c9f3
·frerot on Jul 20 2021, 01:33.
[ci] printing clang-format diff to stdout
38f079f2e407
·frerot on Jul 20 2021, 00:25.
[ci] corrected bash syntax error
21382de51f3b
·frerot on Jul 20 2021, 00:18.
[ci] adding clang-format patch as artifact
b605084b4308
·frerot on Jul 20 2021, 00:09.

Jul 19 2021

[ci] using debian image for linting
9a360c12e700
·frerot on Jul 19 2021, 23:58.
[ci] added linting step with clang-format
f5a49115e55d
·frerot on Jul 19 2021, 23:51.

Jul 15 2021

removed the `use_googletest` build option
a3ffe31ab0e6
·frerot on Jul 15 2021, 23:51.
removing `build_doc` build option
342a305cd8e5
·frerot on Jul 15 2021, 23:33.
linting wrapper
9954206dc53e
·frerot on Jul 15 2021, 17:47.

Jul 14 2021

more linting mods
4d76b041198e
·frerot on Jul 14 2021, 23:51.

Jul 12 2021

applying linting modifications
d92dd3888b13
·frerot on Jul 12 2021, 16:33.

Jul 6 2021

corrections to CHANGELOG
f3a563c654e0
·frerot on Jul 6 2021, 20:35.
using json to dump model attributes in NumpyDumper
0347e231c864
·frerot on Jul 6 2021, 17:16.

Jun 30 2021

testing real and integer types at configure
37817268dbc0
·frerot on Jun 30 2021, 21:58.

Jun 25 2021

corrected description in setup.py
2d5f6817fb8e
·tag: v2.3.0.post1
·frerot on Jun 25 2021, 04:19.
restored root Dockerfile which now install Tamaas automatically
fcc82b958c8a
·frerot on Jun 25 2021, 01:31.

Jun 24 2021

[ci] setting env variables for ccache compilers
60bf8492d01b
·frerot on Jun 24 2021, 03:09.
[ci] corrected yaml syntax
25a7b95e4cfc
·frerot on Jun 24 2021, 00:40.
[ci] cache pytest, last failed test exec order => fail early
dd1b731c3f45
·frerot on Jun 24 2021, 00:33.
[ci] proper cache key
20fb01613949
·frerot on Jun 24 2021, 00:17.

Historypetsc7b96a49f1c3e0847be26a60…

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History
petsc7b96a49f1c3e0847be26a60…