Diffusion tamaas (petsc) History

tamaas/python/wrap
petsc96c60334eadb3f68a42eabf…

Aug 22 2022

Using FieldContainer for integral operators
a2d2aa3c75bf
·frerot on Aug 22 2022, 13:10.
moved field python interface to FieldContainer bindings
01ee3daf64fd
·frerot on Aug 22 2022, 10:57.

Aug 18 2022

making Model use the FieldContainer interface
824c5e5ebb8d
·frerot on Aug 18 2022, 17:24.
added fields container interface
bdf8486d443a
·frerot on Aug 18 2022, 12:02.

Jul 20 2022

fixed flood fill to properly account for pbcs for bbox
d2ad39955cff
·frerot on Jul 20 2022, 15:49.

Jul 15 2022

ModelFactory can set integration method for volume operators
e165b5e84fa6
·frerot on Jul 15 2022, 12:02.

Jun 29 2022

updated copyrights for C++ files
4b538827d5d4
·frerot on Jun 29 2022, 14:39.

Jun 20 2022

added a stat method to compute area of graph of function
a93ea8a43b13
·frerot on Jun 20 2022, 14:48.

Jun 3 2022

clang-tidy is a pia
9a1c04f110fb
·frerot on Jun 3 2022, 15:12.

May 31 2022

allowing sub-classing of contact solver in python
236648d0522c
·frerot on May 31 2022, 15:06.
exposing elastic energy functionals in python
0d42fffa0509
·frerot on May 31 2022, 15:06.

May 30 2022

added API to IntegralOperator to convert into scipy's LinearOperator
0049a94bd5af
·frerot on May 30 2022, 13:38.

Apr 22 2022

added functional accessor for contact solvers
02dde1d5fb78
·frerot on Apr 22 2022, 16:37.

Apr 14 2022

defining boundary field predicate in C++
808f4ef5312b
·frerot on Apr 14 2022, 15:18.

Apr 7 2022

added python constructor for Model
f9607922e458
·frerot on Apr 7 2022, 10:03.

Apr 6 2022

fixed return policy for scatter and gather bindings
68395442fa89
·frerot on Apr 6 2022, 18:35.
added tamaas.mpi.scatter and tamaas.mpi.gather
f6c88495cce5
·frerot on Apr 6 2022, 17:22.

Mar 3 2022

added deep-copy functionality for Model objects
a32fd3ed3a84
·frerot on Mar 3 2022, 12:40.

Mar 1 2022

linting
abda169fde82
·frerot on Mar 1 2022, 15:27.
added a from_voigt compute function
b3d7958eb0de
·frerot on Mar 1 2022, 15:11.
added tamaas.utils which contains some QOL functions
6885f6dd2d1e
·frerot on Mar 1 2022, 15:10.

Jan 4 2022

updated copyright
2b24d9d43e38
·frerot on Jan 4 2022, 10:40.

Jul 20 2021

added linting with clang-tidy & lint corrections
ad9b3ca44951
·frerot on Jul 20 2021, 21:15.

Jul 15 2021

linting wrapper
9954206dc53e
·frerot on Jul 15 2021, 17:47.

Jun 10 2021

cleaned up license headers
1fc7644bad52
·frerot on Jun 10 2021, 22:30.

Jun 9 2021

added more docstrings
e76bb9e66413
·frerot on Jun 9 2021, 17:26.
added docstrings to some python function bindings
1de4d8b950ca
·frerot on Jun 9 2021, 16:35.

May 28 2021

making the whole library compile with cuda
0257e3cb2f4e
·frerot on May 28 2021, 17:15.

Mar 20 2021

[doc] silencing warnings when generating documentation
6c56b69be4a2
·frerot on Mar 20 2021, 00:57.

Jan 7 2021

Merge branch 'deprecated_bindings'
10e17acc88ce
·frerot on Jan 7 2021, 01:58.
unnecessary return type on lambda
d20839711fb3
·frerot on Jan 7 2021, 01:42.
removed all legacy code
8b01fcdb4d21
·frerot on Jan 7 2021, 01:32.
deprecated old bindings
dd37e82c03d3
·frerot on Jan 7 2021, 01:28.

Jan 5 2021

added traction and displacement properties to model bindings
74509e1d1987
·frerot on Jan 5 2021, 18:13.
modified dumpers for new interface
9054b97f8b37
·frerot on Jan 5 2021, 00:06.

Jan 1 2021

copyright year 2021
2316c9ebcdd7
·frerot on Jan 1 2021, 07:47.

Dec 31 2020

added __call__ to IntegralOperator bindings
49155381f7a4
·frerot on Dec 31 2020, 04:51.
adding a constructor with global shape to surface generators
560001b7e019
·frerot on Dec 31 2020, 02:28.
more pythonic bindings of surface generators, solvers and flood fill
9d2cf7093171
·frerot on Dec 31 2020, 01:26.

Dec 30 2020

more pythonic interface for accessing integral operators
cfbbd07ff0cf
·frerot on Dec 30 2020, 23:02.

Dec 10 2020

added documentation on MPI
92343fd27ef3
·frerot on Dec 10 2020, 22:04.

Dec 8 2020

added readonly properties to python model bindings
74402ed7185c
·frerot on Dec 8 2020, 21:47.

Dec 4 2020

prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.
added type traits to python interface
b4ec536528a2
·frerot on Dec 4 2020, 19:59.

Dec 2 2020

added convenience size/rank to mpi bindings
cce181f1da1f
·frerot on Dec 2 2020, 00:07.

Dec 1 2020

moved mpi function bindings to their own submodule
f9fadc483c40
·frerot on Dec 1 2020, 21:44.
added wrapping of local_{size,offset} partitioner functions
3503d740b538
·frerot on Dec 1 2020, 21:13.

Nov 25 2020

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
·frerot on Nov 25 2020, 21:35.

Oct 23 2020

added a function to compute deviatoric of sym tensor fields
54aab33e784a
·frerot on Oct 23 2020, 21:58.

Sep 1 2020

Merge branch 'master' into feature/mpi_fft_engine
ddb30ba41df9
·frerot on Sep 1 2020, 23:22.

Aug 13 2020

added helper method to compute (corrected) contact areas
c9eb34ff4665
·frerot on Aug 13 2020, 17:15.

Aug 3 2020

Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.

Aug 2 2020

allowing compilation without OpenMP
d6d8134e1bba
·frerot on Aug 2 2020, 02:07.

Jul 12 2020

fixing sequential context manager
6f8537513eca
·frerot on Jul 12 2020, 17:24.
added a sequential context manager
ea6e316a0703
·frerot on Jul 12 2020, 01:30.

Jul 11 2020

mirroring logger behavior with MPI for python wrapper
1785d820392d
·frerot on Jul 11 2020, 00:28.

Jul 10 2020

Merge branch 'master' into feature/mpi_fft_engine
0defcff64961
·frerot on Jul 10 2020, 23:59.
redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.
using std::shared_ptr<Functional> as holder type for functionals
aba0a246fdf6
·frerot on Jul 10 2020, 18:04.

Jul 6 2020

tentative implementation of surface generation with mpi
5b293e6eba23
·frerot on Jul 6 2020, 04:17.

Jun 25 2020

added access to yield stress and hardening modulus in residual
7dbb2d1099f2
·frerot on Jun 25 2020, 16:42.

Jun 18 2020

added __contains__ and __iter__ to model bindings
2c3c3ddadf5a
·frerot on Jun 18 2020, 16:23.

May 5 2020

updating copyright years
ae0010d56921
·frerot on May 5 2020, 18:13.

Apr 20 2020

added -Wextra and fixed some warnings
43f7d9ba9056
·frerot on Apr 20 2020, 21:24.

Apr 17 2020

corrected code boundary definitions of legacy bem
28b1e8b7df63
·frerot on Apr 17 2020, 22:23.

Apr 16 2020

allowing change of integration method in python + appropriate testing
32977d6d20b0
·frerot on Apr 16 2020, 17:31.

Apr 1 2020

added compile option to remove legacy code
131906bb58cc
·frerot on Apr 1 2020, 20:28.

Aug 5 2019

added flood-fill for 1D
57d91d59d23f
·frerot on Aug 5 2019, 14:52.

Jul 24 2019

added default values to PKR constraint and unknown types
c142fad9055b
·frerot on Jul 24 2019, 14:38.

Jul 10 2019

moved eigenvalues computation to separate submodule + vonMises
05f6175eafb9
·frerot on Jul 10 2019, 12:21.

Jul 3 2019

keep alive solver arguments
88dc18ff00c3
·frerot on Jul 3 2019, 12:52.

Jun 24 2019

added default argument for hardening modulus
aba856e0a5ac
·frerot on Jun 24 2019, 16:34.

Jun 20 2019

correct swap for sigma_0 and hardening
41fed3ca52fe
·frerot on Jun 20 2019, 16:40.

Jun 19 2019

implemented surface change from residual saturated displacements
5cff76969a2b
·frerot on Jun 19 2019, 16:23.

Jun 18 2019

added accessor to saturation pressure in KatoSaturated
0eeca3af2967
·frerot on Jun 18 2019, 14:28.

Jun 17 2019

annotating function arguments for solvers
3a43615459e4
·frerot on Jun 17 2019, 12:51.

May 1 2019

keep_alive on dumpers added to a model
057f02fbdde1
·frerot on May 1 2019, 17:37.
removed __(BEGIN|END)_TAMAAS__ macros and replaced with namespace
cb09ff877dab
·frerot on May 1 2019, 12:58.

Apr 30 2019

added possibility to dump all fields of a model
2d5d7aabb8b4
·frerot on Apr 30 2019, 14:13.

Apr 10 2019

implemented saturated solver
301deea6ae90
·frerot on Apr 10 2019, 17:47.

Apr 5 2019

implemented accelerated fixed point solver
23ec89441337
·frerot on Apr 5 2019, 16:23.
added simple logging capabilities
a240eb50bf7e
·frerot on Apr 5 2019, 16:22.

Mar 13 2019

added eigenvalue computation on fields
73057c1f714c
·frerot on Mar 13 2019, 19:53.
replaced registered fields with shared pointers
3e2bb81840fb
·frerot on Mar 13 2019, 19:52.

Mar 8 2019

added volume flood fill
87e6e671c042
·frerot on Mar 8 2019, 13:45.

Mar 5 2019

changed license to Affero GNU General Public License
74b9233dc365
·frerot on Mar 5 2019, 12:32.

Mar 1 2019

explicit error message in BEEngine if operator is not registered
04f8a8d57a63
·frerot on Mar 1 2019, 11:29.
added registering volume operators to model factory
f31c0b36e5f4
·frerot on Mar 1 2019, 11:15.
added register field to python interface
da328e82b228
·frerot on Mar 1 2019, 11:01.

Feb 26 2019

added computation of perimeter in flood fill
ecb096dd34da
·frerot on Feb 26 2019, 15:25.
better memory management of filters + better tests
e7c9f396158e
·frerot on Feb 26 2019, 10:46.

Feb 25 2019

adding regularized surface spectrum
be78e2255e2b
·frerot on Feb 25 2019, 11:37.

Feb 22 2019

after two years, I have fixed the surface statistics !
03b3153e4183
·frerot on Feb 22 2019, 18:04.

Feb 12 2019

added hdf5 dumper
744f0918bc36
·frerot on Feb 12 2019, 15:58.

Feb 11 2019

fixed return type on model::__getitem__
4041f833e795
·frerot on Feb 11 2019, 17:29.

Feb 6 2019

modified some model behavior for voigt notation (WIP)
c23abaf90bd2
·frerot on Feb 6 2019, 13:59.
added respect of return value policies in grid typecasting
824b13fd0599
·frerot on Feb 6 2019, 13:23.

Jan 15 2019

added relaxation parameter as member of EPICSolver
d9274768fd3c
·frerot on Jan 15 2019, 13:13.