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Analyse data using R (statistical package)
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Version 2 of 7: You are viewing an older version of this document, as it appeared on Feb 22 2021, 09:42.
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Installing and using romero.gateway package in RStudio

Windows

This example uses Windows 10, other Windows version should be similar.

  • Install a JDK, for example AdoptOpenJDK. Make sure to tick the checkbox to set the JAVA_HOME and PATH environment variables during the installation.
  • In Rstudio, go to Tools > Install Packages...
  • Install the dependencies httr, jpeg and rJava from CRAN:

  • Download the latest romero.gateway release zip from Github and install it:

Analyze OMERO data using R

You can see examples on how to connect to OMERO with R with this jupyter notebook:
https://mybinder.org/v2/gh/ome/omero-guide-r/master?filepath=notebooks/idr0021_Segmentation.ipynb

This notebook uses the EBImage package. If you don't have it, you can download it from here.

Last Author
stoffel
Last Edited
Feb 22 2021, 09:42

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stoffel changed the title from Analyse data using R (statistical package) to Analyze data using R (statistical package).Feb 22 2021, 10:28
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