Diffusion scATAC-seq 5ff7043d02d8

AIC computation added to ChIPPartitioning impl
5ff7043d02d8
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Authored by rgroux on May 3 2019, 15:19.

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Description

AIC computation added to ChIPPartitioning impl

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Committed

May 3 2019, 15:19

Pushed

May 3 2019, 15:23

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R8820:5a106c74da4f: ChIPPartitioning algorithm implemented and fully working.

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rgroux committed R8820:5ff7043d02d8: AIC computation added to ChIPPartitioning impl (authored by rgroux).May 3 2019, 15:19

Changes (16)

				Path
	M			.gitignore
	M			scripts/bulk_sequencing/cluster_ctcf_dnase_k562.sh
	M			scripts/bulk_sequencing/cluster_ctcf_mnase_k562.sh
	M			src/Applications/ChIPPartitioningApplication.cpp
	M			src/Applications/ProbToRefApplication.cpp
	M			src/Applications/ProbToRefApplication.hpp
	M			src/CMakeLists.txt
	P			src/Clustering/EMEngine.cpp Copied to src/Clustering/EMEngine.cpp.new
	P			src/Clustering/EMEngine.cpp.new Copied from src/Clustering/EMEngine.cpp
	M			src/Clustering/EMEngine.hpp
	M			src/Clustering/ReferenceComputer.cpp
	M			src/Clustering/ReferenceComputer.hpp
	M			src/Statistics/Statistics.cpp
	A			src/Utility/Utility.cpp
	A			src/Utility/Utility.hpp
	M			src/main.cpp

R8820:5ff7043d02d8

.gitignore

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scripts/bulk_sequencing/cluster_ctcf_dnase_k562.sh

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scripts/bulk_sequencing/cluster_ctcf_mnase_k562.sh

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src/Applications/ChIPPartitioningApplication.cpp

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src/Applications/ProbToRefApplication.cpp

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src/Applications/ProbToRefApplication.hpp

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src/CMakeLists.txt

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src/Clustering/EMEngine.cpp

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src/Clustering/EMEngine.cpp.new

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src/Clustering/EMEngine.hpp

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src/Clustering/ReferenceComputer.cpp

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src/Clustering/ReferenceComputer.hpp

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src/Statistics/Statistics.cpp

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src/Utility/Utility.cpp

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src/Utility/Utility.hpp

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src/main.cpp

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