History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
4ffaa73494ea | tlemaire | introduced custom defined InputError exceptions (instead of assert statements)… | Mar 15 2018 | |||
9df57ec1684b | tlemaire | addded time-step-dependent output arrays downsampling in classic simulations to… | Mar 15 2018 | |||
d8a1246ad44e | tlemaire | temporarily removed checking for prior lookup file existence upon new lookup… | Mar 15 2018 | |||
b65f7bad637c | tlemaire | general optimization of integration methods (elec, mech and US classic) using… | Mar 14 2018 | |||
01238213b788 | tlemaire | Switched from ode (lsoda) to odeint for classic method to see if it solves… | Mar 13 2018 | |||
1b6d6a579519 | tlemaire | implemented neuron-specific charge interval for lookup creation. | Mar 13 2018 | |||
acab28778569 | tlemaire | changed "ch_mech" by "neuron" | Mar 13 2018 | |||
1edd575f6465 | Theo Lemaire | replaced DF by DC, and added pandas dataframes to store and retrieve simulation… | Mar 13 2018 | |||
edd5594d9646 | Theo Lemaire | replaced channels by neurons | Mar 12 2018 | |||
8d85b3cb30d6 | tlemaire | adaptive time step lowering for high-PRF protocols in Elec and effective-US… | Mar 8 2018 | |||
89d20f6d2cb6 | tlemaire | updated titration methods and generated LeechP lookups | Feb 28 2018 | |||
c9dad3d35684 | tlemaire | corrected code for LeechT neuron, and validated it on electrical stimuli | Nov 22 2017 | |||
6be1756dda64 | tlemaire | added biomech and biophys parameters directly as BilayerSonophore class… | Sep 12 2017 | |||
43647159e654 | tlemaire | replaced print statements with logging statements in internal modules | Sep 10 2017 | |||
ffed8b864bbf | tlemaire | replaced getopt with argparse in test scripts | Sep 6 2017 | |||
7fff2117cd10 | tlemaire | replaced printPct by progressbar | Sep 6 2017 | |||
f51d67fdf64a | tlemaire | updated test_values | Sep 3 2017 | |||
92e2cd326a4e | tlemaire | added profiling option for each method inside test_basic.py, using cProfile and… | Sep 3 2017 | |||
b0a231289d69 | tlemaire | added standardized plotEffCoeffs function to pltutils | Sep 2 2017 | |||
3f5921510ae9 | tlemaire | added plotGatingKinetics method to plot the steady-sate and time constant… | Sep 1 2017 | |||
32c77b1353fa | tlemaire | added temporary code to delay last pulse during PW stimuli in runEffective… | Sep 1 2017 | |||
e2ff032a6759 | tlemaire | added option to specify labels in plotComp | Sep 1 2017 | |||
cf8e6794b04c | tlemaire | debugged and validated new runEffective method: interpolation datasets at… | Aug 30 2017 | |||
7da392ae7e7a | tlemaire | added 2nd version of runEffective where 3D (f, A, Q) interpolation datasets are… | Aug 29 2017 | |||
071e81993e19 | tlemaire | modified data validation on Adrive for MECH and ASTIM simulations (strictly… | Aug 29 2017 | |||
0f69714e39ec | tlemaire | modified createLookup method to create, for each coefficient, a 3D array of… | Aug 29 2017 | |||
1ea422ad10eb | tlemaire | optimized effective method: 2D (amp, charge) coefficients interpolators are… | Aug 28 2017 | |||
90c71fb8d8e5 | tlemaire | updated run functions to deal with zero offset. updated test_graphs | Aug 28 2017 | |||
b50efb81b3cb | tlemaire | updated test_basic.py with more thorough tests. Added more thorough input… | Aug 28 2017 | |||
3c218a52595b | tlemaire | Added pulsed stimuli handling to SolverElec. Implemented moved titration… | Aug 25 2017 | |||
4f9a8fd2aed4 | tlemaire | moved some utils functions into simutils & pltutils modules | Aug 23 2017 | |||
abfba2e921d7 | tlemaire | first commit to c4science | Aug 23 2017 |
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