History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
8102e979f684 | tlemaire | updated SPIKE_MIN_VAMP to allow robust spike detection for sweeney model | Sep 3 2019 | |||
8226a9490c9b | tlemaire | adapted constants to enable sweeney lookups creation. | Aug 26 2019 | |||
4f5fb5ee0829 | tlemaire | implemented SweeneyNode class. added PointNeuron.chooseTimeStep method to… | Aug 26 2019 | |||
b427c3fd93df | tlemaire | added getClosure to translator. added getConstantsDict function in constants.py | Jul 3 2019 | |||
6c10d4162d71 | tlemaire | added default output directory ("dump"). cleaned up neuron classes. | Jun 20 2019 | |||
b0f51febd195 | tlemaire | updated constants | Jun 13 2019 | |||
af7294977045 | tlemaire | adapted MechSimParser for use in run_lookups.py | Jun 13 2019 | |||
b42a0de93240 | tlemaire | updated all file headers | Jun 12 2019 | |||
4ba3212edf92 | Theo Lemaire | added simulators classes to take care of simulations | May 29 2019 | |||
678bec02c372 | Theo Lemaire | added "PI" type control of convergence in nbls.evaluateStability method | May 23 2019 | |||
1a5f9b3c215b | Theo Lemaire | implemented neuron-dependent titration to find specific thresholds (excitation… | May 22 2019 | |||
0ee058e8778d | Theo Lemaire | added max integration duration to stability analysis to avoid infinite loops in… | May 22 2019 | |||
2024b001441b | Theo Lemaire | implemented nbls.quasiSteadStateiNet method, used to compute Q-SFPs iteratively… | May 22 2019 | |||
8a17ab2f8c11 | Theo Lemaire | implemented specific nbls evaluateStability method to evaluate FP stability by… | May 21 2019 | |||
44780023da34 | Theo Lemaire | corrected titrate function to work also with negative injected currents (for… | Apr 29 2019 | |||
6ffd825273a4 | Theo Lemaire | improved titrate function with nSpikes methods pneuron and nbls classes. added… | Apr 5 2019 | |||
6f96c02c5ecb | tlemaire | corrected STN lookups, comparison of temporal profiles of spontaneous activity… | Mar 20 2019 | |||
db85dec73950 | tlemaire | implemented PointNeuron.currentToConcentrationRate method for a common way to… | Mar 13 2019 | |||
a74f9c571b7d | tlemaire | adapted fig9.py with corrected STN model (new traces). | Mar 8 2019 | |||
8684707c3f08 | tlemaire | corrected Qbounds for lookups generation in FH neuron | Jan 10 2019 | |||
82590fe13581 | tlemaire | changed PMAVG_STD_ERR_MAX value to allow BLS lookups generation for FH… | Jan 9 2019 | |||
65c1d8649331 | tlemaire | implemented Frankenhaeuser-Huxley membrane mechanism (validated against data… | Jan 9 2019 | |||
9eca746695d1 | tlemaire | STN model validated for E-STIM by reproduction of key features (spontaneous… | Dec 3 2018 | |||
850b05b61c5e | tlemaire | added plotFRspectrum function to actmap module. updated fig7 script, and added… | Nov 29 2018 | |||
9f827c942524 | tlemaire | added recording of computation times during lookups creation. | Nov 25 2018 | |||
d17615ffb4e6 | tlemaire | improved plotPhasePlane function. implemented isWithin function for loose bound… | Oct 28 2018 | |||
ed0d192b377b | tlemaire | added scripts to generate paper figures automatically. | Oct 2 2018 | |||
73851d6ac128 | tlemaire | updated package documentation | Sep 28 2018 | |||
2a334b211bff | tlemaire | major changes to the package (PointNeuron, SonicNeuron, ...) | Sep 23 2018 | |||
0178f67d315e | tlemaire | redesigned lookups creation to work with sonophore diameter as 4th dimension | Sep 14 2018 | |||
043172721a44 | tlemaire | changed package name to PySONIC. | Aug 21 2018 |
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