History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
9f09f2fdc039 | Theo Lemaire | Changed titration functions (now using generic titrate), Implemented Xinf… | Apr 4 2019 | |||
178930fa846c | tlemaire | added generic plot_QSS_IQ.py script to plot the IQ phase-plane diagram for a… | Mar 26 2019 | |||
a2726a130bec | tlemaire | implemented new QSS plot module with generic plotVarDynamics, plotVarsQSS and… | Mar 26 2019 | |||
b6c44fad8f0a | tlemaire | corrected the nbls.quasiSteadyStates method to compute QSS values of slow… | Mar 26 2019 | |||
8a71066a647c | tlemaire | replaced lookups list by lookups dict in all derStatesEff methods. added get… | Mar 26 2019 | |||
5a5f2babbc5d | tlemaire | corrected computation of Cai_ss for STN neuron, now using voltage-gated steady… | Mar 20 2019 | |||
256a4aab9b65 | tlemaire | corrected nbls.getQSSvars method, now computing non-rate-defined QSS values… | Mar 20 2019 | |||
6f96c02c5ecb | tlemaire | corrected STN lookups, comparison of temporal profiles of spontaneous activity… | Mar 20 2019 | |||
07d55c08e109 | tlemaire | Implemented NmodlGenerator core class to automatically generate NEURON MOD file… | Mar 18 2019 | |||
8623752f128f | tlemaire | cleaned up neurons docstring. added getDesc method to PointNeurons class. | Mar 15 2019 | |||
a812d7d527af | tlemaire | created plt.pltutils module and moved relevant plotting functions into it. | Mar 15 2019 | |||
81554e5d4d67 | tlemaire | removed states0 attribute from neuron classes (now calling steadyStates method… | Mar 14 2019 | |||
453f896987ce | tlemaire | generalized the use of getPltVars and getPltScheme with inheritance scheme… | Mar 14 2019 | |||
9d1a2fc5cd08 | tlemaire | major reformatting of plotBatch function | Mar 14 2019 | |||
f6195a153a01 | tlemaire | cleaned up neurons docstring. defined PointNeuron.getPltVars method (possibly… | Mar 14 2019 | |||
d744944eba53 | tlemaire | major reformatting of neuron classes. | Mar 13 2019 | |||
db85dec73950 | tlemaire | implemented PointNeuron.currentToConcentrationRate method for a common way to… | Mar 13 2019 | |||
b178c1dca3c9 | tlemaire | replaced CCa_out by Cao and KCa by 1 / taur_Cai in STN class for more clarity. | Mar 13 2019 | |||
ce5a9df84ba1 | tlemaire | added Qbounds as a PointNeuron class method. cleaned up use of Cai in TC class. | Mar 13 2019 | |||
33c52c6b04a5 | tlemaire | removed all combined gating variables from pltvars schemes. | Mar 13 2019 | |||
817387c89edd | tlemaire | implemented PointNeuron.getCurrentPltVars method to genrate a dictionary plot… | Mar 13 2019 | |||
09ec0decb4bd | tlemaire | replaced iNet method by currents method in all neuron classes (iNet now defined… | Mar 13 2019 | |||
2b5b9cf5a78b | tlemaire | corrected error in STN.derD1. lookup tables to re-run. | Mar 12 2019 | |||
7082d86bf3da | tlemaire | added get_dCCa and findCaeq methods ot STN neuron (iterative search to find… | Mar 12 2019 | |||
c5433b2c448c | tlemaire | added currents methods to Cortical, Thalamic and STN classes, that returns a… | Mar 10 2019 | |||
e73ca2da1333 | tlemaire | corrected STN lookups. added testQSS script to analyze STN neuron plateau… | Mar 8 2019 | |||
990c8181cf46 | tlemaire | corrected sigmaT2_b from -10 mV to 10 mV in STN implementation. started new QSS… | Mar 7 2019 | |||
da8e0bbde997 | tlemaire | renamed currents for more clarity | Mar 6 2019 | |||
2e64aa90c325 | tlemaire | changed nomenclature of current methods from "curr..." to "i..." | Mar 5 2019 | |||
865020d8c630 | tlemaire | added RS neuron lookups with partial coverage (spatially averaged). updated… | Feb 28 2019 | |||
69f20e7c2a18 | tlemaire | modified Qbounds to account for capacitance value in all neuron types. | Jan 11 2019 | |||
cf20bd8f6516 | tlemaire | added lookups for FH membrane mechanism (tested) | Jan 11 2019 | |||
8684707c3f08 | tlemaire | corrected Qbounds for lookups generation in FH neuron | Jan 10 2019 | |||
82590fe13581 | tlemaire | changed PMAVG_STD_ERR_MAX value to allow BLS lookups generation for FH… | Jan 9 2019 | |||
65c1d8649331 | tlemaire | implemented Frankenhaeuser-Huxley membrane mechanism (validated against data… | Jan 9 2019 | |||
e99b70b6952c | tlemaire | added STN lookups and corrected derEffStates method. | Dec 4 2018 | |||
7655cca494a0 | tlemaire | corrected STN getEffRates and derStatesEff methods for correct lookups creation… | Dec 3 2018 | |||
9eca746695d1 | tlemaire | STN model validated for E-STIM by reproduction of key features (spontaneous… | Dec 3 2018 | |||
0ebd7ae3b932 | tlemaire | replaced 'L' by 'Leak' in neurons nomenclature. implemented STN neuron with… | Nov 30 2018 | |||
84a00ea7e59b | tlemaire | recomputed lookups for all CNS neurons. modified figs 5 and 6 generation… | Nov 27 2018 | |||
73851d6ac128 | tlemaire | updated package documentation | Sep 28 2018 | |||
d2bb8612b26e | tlemaire | new lookup tables for IB, LeechT and LeechP neurons. | Sep 28 2018 | |||
3ba84a26398c | tlemaire | revmoved old TC.mod file | Sep 27 2018 | |||
81ffd1c605f6 | tlemaire | added LTS and TC lookups. corrected errors in run_astim and run_estim arguments… | Sep 27 2018 | |||
f5f327799ad4 | tlemaire | attempt to fix multiprocessing lookups creation. | Sep 27 2018 | |||
7075d3ab7f91 | tlemaire | removed pltutils file | Sep 26 2018 | |||
4a67049acd76 | tlemaire | added actmap to plt module, with command line script. | Sep 26 2018 | |||
8819bbb0e66f | tlemaire | cleaned up deprecated folder. added notebook about balance quasi-steady… | Sep 25 2018 | |||
954e545fa6ac | tlemaire | turned intermolecular pressure test script into notebook. removed Input error… | Sep 24 2018 | |||
1951d49ccd25 | tlemaire | moved lookups into neurons folder | Sep 24 2018 | |||
2a334b211bff | tlemaire | major changes to the package (PointNeuron, SonicNeuron, ...) | Sep 23 2018 | |||
b115baec5ab3 | tlemaire | added vtrap function to compute rate constants. added selectDirDialog function… | Sep 19 2018 | |||
043172721a44 | tlemaire | changed package name to PySONIC. | Aug 21 2018 |
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