R4670/simmaster
R4670/sim
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
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cf2459c7182e | tlemaire | removed unwanted data files from sim directory | Mar 16 2018 | |||
4c475209bac9 | tlemaire | corrected Z bounding for out-of-range deflections | Mar 16 2018 | |||
50e85131e3d9 | tlemaire | added runMechSingle to simutils and MECH_run script | Mar 15 2018 | |||
69a4e42fa766 | tlemaire | added user input to decide whether lookup file should be overwritten in case of… | Mar 15 2018 | |||
4ffaa73494ea | tlemaire | introduced custom defined InputError exceptions (instead of assert statements)… | Mar 15 2018 | |||
10fde2422c97 | tlemaire | replaced error raising by a simple warning for out-of-range deflections in… | Mar 15 2018 | |||
b65f7bad637c | tlemaire | general optimization of integration methods (elec, mech and US classic) using… | Mar 14 2018 | |||
1b6d6a579519 | tlemaire | implemented neuron-specific charge interval for lookup creation. | Mar 13 2018 | |||
acab28778569 | tlemaire | changed "ch_mech" by "neuron" | Mar 13 2018 | |||
1edd575f6465 | Theo Lemaire | replaced DF by DC, and added pandas dataframes to store and retrieve simulation… | Mar 13 2018 | |||
edd5594d9646 | Theo Lemaire | replaced channels by neurons | Mar 12 2018 | |||
34958bd21f55 | tlemaire | adapted batch files for LeechP | Mar 8 2018 | |||
6e5878fe0ecf | tlemaire | corrected PRF display issues in command line scripts ESTIM_run and ASTIM_run | Mar 7 2018 | |||
63c842041ef8 | tlemaire | updated README and LICENCSE files. added extra BLS lookups. corrected titration… | Mar 7 2018 | |||
89d20f6d2cb6 | tlemaire | updated titration methods and generated LeechP lookups | Feb 28 2018 | |||
c59a8267c97e | tlemaire | corrected LeechP implementation using dynamic Nernst potentials for Sodium and… | Jan 9 2018 | |||
33ee63af70aa | tlemaire | Lots of corrections and improvements to the LeechP model implementation. E-STIM… | Dec 12 2017 | |||
094fd25223f4 | tlemaire | added LeechPressure to channels init. added leechP variables to pltvars. tested… | Dec 1 2017 | |||
ae51b3bafaec | tlemaire | Added sonophore diameter to ASTIM files naming, and changed DF to 2 decimals… | Nov 29 2017 | |||
1bb50e8f0025 | tlemaire | validated effective method for LeechT neuron, added that neuron to test_values. | Nov 27 2017 | |||
f1fbc6e5b9bb | tlemaire | added LeechT lookup | Nov 24 2017 | |||
c9dad3d35684 | tlemaire | corrected code for LeechT neuron, and validated it on electrical stimuli | Nov 22 2017 | |||
6249b5298f4c | tlemaire | debugged double printing issue of logging statements | Sep 12 2017 | |||
6be1756dda64 | tlemaire | added biomech and biophys parameters directly as BilayerSonophore class… | Sep 12 2017 | |||
189a078bf8d2 | tlemaire | added color to logging statements | Sep 10 2017 | |||
6cd8d175ad7b | tlemaire | improved error handling | Sep 10 2017 | |||
34e47b5286e0 | tlemaire | added ESTIM_run script. added plot command line option to ASTIM_run and… | Sep 6 2017 | |||
15cf962d7fc7 | tlemaire | added ASTIM_run script to run single ASTIM simulation from command line | Sep 6 2017 | |||
14d95d317eeb | tlemaire | replaced neurons object lists by neurons name list in batch functions input | Sep 6 2017 | |||
151337217cab | tlemaire | introduced default arguments in batch functions for bls_params and geom | Sep 6 2017 | |||
63f20548155d | tlemaire | separated checkBatchLog function into setBatchDir and checkBatchLog functions | Sep 6 2017 | |||
8680bc7dccaf | tlemaire | added runEStim and runAStim functions. added locker to xlslog | Sep 4 2017 | |||
32c77b1353fa | tlemaire | added temporary code to delay last pulse during PW stimuli in runEffective… | Sep 1 2017 | |||
e2ff032a6759 | tlemaire | added option to specify labels in plotComp | Sep 1 2017 | |||
cf8e6794b04c | tlemaire | debugged and validated new runEffective method: interpolation datasets at… | Aug 30 2017 | |||
0f69714e39ec | tlemaire | modified createLookup method to create, for each coefficient, a 3D array of… | Aug 29 2017 | |||
c5cad185b222 | tlemaire | added getNeuronsDict function to utils | Aug 29 2017 | |||
c61b8e3492f6 | tlemaire | renamed LoadParams to load_BLS_params | Aug 28 2017 | |||
b50efb81b3cb | tlemaire | updated test_basic.py with more thorough tests. Added more thorough input… | Aug 28 2017 | |||
06127af4b669 | tlemaire | included default plotting scheme inside neuron classes definition. Modified… | Aug 25 2017 | |||
c30d03edb7cc | tlemaire | adapted plotComp to deal with pulsed ESTIM outputs and MECH outputs. corrected… | Aug 25 2017 | |||
0a89dde7f847 | tlemaire | implemented runMechBatch function. adapted plotBatch function to deal with MECH… | Aug 25 2017 | |||
c9053e689690 | tlemaire | added titrateEStim and titrateEStimBatch functions | Aug 25 2017 | |||
3c218a52595b | tlemaire | Added pulsed stimuli handling to SolverElec. Implemented moved titration… | Aug 25 2017 | |||
788e6d1c95b2 | tlemaire | added smart labels to plotComp, smart title to plotBatch | Aug 24 2017 | |||
b139db9e82d1 | tlemaire | added LeechT variables to workflow | Aug 24 2017 | |||
2c7de2047898 | tlemaire | introduced standardized workflow for both E-STIM and A-STIM simulations and… | Aug 24 2017 | |||
4f9a8fd2aed4 | tlemaire | moved some utils functions into simutils & pltutils modules | Aug 23 2017 | |||
abfba2e921d7 | tlemaire | first commit to c4science | Aug 23 2017 |
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