Diffusion PySONIC (old) (master) History

R4670/PointNICE/bls.py
master9435cc4aff31dcef17151fb…

May 2 2018

vectorized relevant functions of the BilayerSonophore class
f7bc3b340b2d
·tlemaire on May 2 2018, 15:40.

Apr 30 2018

added reinit method to BilayerSonophore class. added ComputeSpikeMetrics…
74c9b13f40bf
·tlemaire on Apr 30 2018, 13:55.

Apr 24 2018

added PmCompMethod as a parameter for all relevant methods of the…
5e84496cf5e0
·tlemaire on Apr 24 2018, 19:06.

Apr 22 2018

added __str__ method to BilayerSonophore class that prints values of class and…
a7922aa5b6ad
·tlemaire on Apr 22 2018, 23:54.

Mar 16 2018

Added user input to decide whether to continue batch after assertion error or…
5049e821acd8
·tlemaire on Mar 16 2018, 13:30.
renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to…
5b8f09fbd295
·tlemaire on Mar 16 2018, 12:06.
corrected Z bounding for out-of-range deflections
4c475209bac9
·tlemaire on Mar 16 2018, 11:52.

Mar 15 2018

added runMechSingle to simutils and MECH_run script
50e85131e3d9
·tlemaire on Mar 15 2018, 19:23.
introduced custom defined InputError exceptions (instead of assert statements)…
4ffaa73494ea
·tlemaire on Mar 15 2018, 17:06.
renamed INPUT_CHARGE_RANGE to CHARGE_RANGE
e5a0b44e3d54
·tlemaire on Mar 15 2018, 14:02.
added correction of deflection value in eqMech (with warning) if below critical…
d350701db48c
·tlemaire on Mar 15 2018, 14:00.
replaced error raising by a simple warning for out-of-range deflections in…
10fde2422c97
·tlemaire on Mar 15 2018, 11:17.

Mar 14 2018

general optimization of integration methods (elec, mech and US classic) using…
b65f7bad637c
·tlemaire on Mar 14 2018, 19:30.

Nov 29 2017

Added sonophore diameter to ASTIM files naming, and changed DF to 2 decimals…
ae51b3bafaec
·tlemaire on Nov 29 2017, 14:59.

Sep 12 2017

added biomech and biophys parameters directly as BilayerSonophore class…
6be1756dda64
·tlemaire on Sep 12 2017, 14:46.

Sep 10 2017

replaced print statements with logging statements in internal modules
43647159e654
·tlemaire on Sep 10 2017, 17:16.

Sep 6 2017

added ASTIM_run script to run single ASTIM simulation from command line
15cf962d7fc7
·tlemaire on Sep 6 2017, 16:31.

Sep 4 2017

added runEStim and runAStim functions. added locker to xlslog
8680bc7dccaf
·tlemaire on Sep 4 2017, 17:00.

Sep 3 2017

added smart loading of derived parameters from lookup file at BLS initiation
6688904b2a82
·tlemaire on Sep 3 2017, 19:15.
updated test_values
f51d67fdf64a
·tlemaire on Sep 3 2017, 17:23.
added profiling option for each method inside test_basic.py, using cProfile and…
92e2cd326a4e
·tlemaire on Sep 3 2017, 16:53.

Aug 29 2017

modified data validation on Adrive for MECH and ASTIM simulations (strictly…
071e81993e19
·tlemaire on Aug 29 2017, 16:27.

Aug 28 2017

updated test_basic.py with more thorough tests. Added more thorough input…
b50efb81b3cb
·tlemaire on Aug 28 2017, 14:14.

Aug 25 2017

implemented runMechBatch function. adapted plotBatch function to deal with MECH…
0a89dde7f847
·tlemaire on Aug 25 2017, 17:20.

Aug 23 2017

first commit to c4science
abfba2e921d7
·tlemaire on Aug 23 2017, 14:28.