Diffusion PySONIC (old) (master) History

R4670/PySONIC/postpro.py
master47f7640b7bcb8e3fff2e386…

May 19 2021

added workaround solution for passive generic lookup name
40ac2cbf792f
·tlemaire on May 19 2021, 11:26.

May 17 2021

clarified terms in gamma functions
575ad8b758ee
·tlemaire on May 17 2021, 20:53.
started implementing gamma evaluation method
9b83a80b55f5
·tlemaire on May 17 2021, 20:25.

Mar 2 2021

added transition handling in computeTimeStep.
28b9ed25d674
·tlemaire on Mar 2 2021, 15:03.

Aug 8 2020

added postpro.filtfilt function and plot_Cm_filtering script
a3951dd16d9c
·tlemaire on Aug 8 2020, 15:49.

Apr 28 2020

added input-ouput match pre-check in LogBatch.run method to avoid unnecessary…
fcb5a387a33e
·tlemaire on Apr 28 2020, 21:21.

Apr 17 2020

cleaned-up find_tpeaks function
e775528e1afc
·tlemaire on Apr 17 2020, 15:18.
corrected error in computeFRProfile when no spikes are detected.
447a9236fa20
·tlemaire on Apr 17 2020, 14:53.

Dec 13 2019

Correction in of the find_tpeaks function in postpro.py
cad5a41a29b0
·vicari on Dec 13 2019, 15:56.

Dec 9 2019

added boundDataframe method to postpro module
4a918211cc11
·tlemaire on Dec 9 2019, 08:14.

Dec 6 2019

re-ran and completed STN notebook
d0b57c5e137d
·tlemaire on Dec 6 2019, 17:43.

Nov 13 2019

created Timeprotocol and PulsedProtocol classes, now used in pneuron, nbls and…
bc1800471252
·tlemaire on Nov 13 2019, 18:11.

Sep 30 2019

updated ActivationMap (removed correctAmp method). corrected TimeSeriesPlot.
21401e741886
·tlemaire on Sep 30 2019, 19:48.

Sep 6 2019

added prependDataframe method to postpro module.
01c2a27636c1
·tlemaire on Sep 6 2019, 14:44.
corrected minor issues in spike detection functions (dt bounding for resampling…
107df2b92970
·tlemaire on Sep 6 2019, 12:56.
modified find_tpeaks to work with irregular time vectors.
ec87894d9435
·tlemaire on Sep 6 2019, 12:31.

Aug 22 2019

harmonized peaks/spikes detection process across the package.
db880034dc26
·tlemaire on Aug 22 2019, 15:31.

Aug 14 2019

added automatic solution prepending to all simulate methods (to treat initial…
2278e599a753
·tlemaire on Aug 14 2019, 17:51.

Jun 16 2019

finished implmenting Firing Rate as plot variable (now replacing plotFRProfile).
63faa327c865
·tlemaire on Jun 16 2019, 22:47.
added firing rate to plot variables
b461503582fb
·tlemaire on Jun 16 2019, 13:05.

Jun 14 2019

added outputdir option to simQueue methods. added automatic parsing to Parser…
de8bdbc4fee0
·tlemaire on Jun 14 2019, 11:34.

Jun 12 2019

updated all file headers
b42a0de93240
·tlemaire on Jun 12 2019, 23:15.

Jun 2 2019

removed unnecessary script
b21bb388bb20
·Theo Lemaire on Jun 2 2019, 22:42.

May 27 2019

added logNSpikes function to pneuron class.
c23526a0ca16
·Theo Lemaire on May 27 2019, 16:38.

May 22 2019

implemented nbls.quasiSteadStateiNet method, used to compute Q-SFPs iteratively…
2024b001441b
·Theo Lemaire on May 22 2019, 09:36.

May 16 2019

replaced linear interpolation of QSS at Q-SFPs (inaccurate) by full…
3ad8ad914eec
·Theo Lemaire on May 16 2019, 17:18.
added np.nan bounding to all np.interp uses in the code. implemented…
3f4135902bdc
·Theo Lemaire on May 16 2019, 15:30.

May 10 2019

major improvements to QSS module
7a27b761d220
·Theo Lemaire on May 10 2019, 18:09.

Apr 8 2019

adapted plotQSSVarVsAmp and plotEqChargeVsAmp functions for ESTIM use (not…
ddab2a4571ea
·Theo Lemaire on Apr 8 2019, 23:07.

Apr 5 2019

improved titrate function with nSpikes methods pneuron and nbls classes. added…
6ffd825273a4
·Theo Lemaire on Apr 5 2019, 17:47.

Apr 4 2019

Changed titration functions (now using generic titrate), Implemented Xinf…
9f09f2fdc039
·Theo Lemaire on Apr 4 2019, 13:38.

Mar 12 2019

added get_dCCa and findCaeq methods ot STN neuron (iterative search to find…
7082d86bf3da
·tlemaire on Mar 12 2019, 01:29.

Oct 25 2018

plotPhaseDiagram method validated on CW stimuli
35b8bf12ec49
·tlemaire on Oct 25 2018, 22:49.
implemented figtitle method for direct labeling from metadata. implemented…
d2b627754312
·tlemaire on Oct 25 2018, 14:52.

Oct 2 2018

added scripts to generate paper figures automatically.
ed0d192b377b
·tlemaire on Oct 2 2018, 02:55.

Sep 28 2018

updated package documentation
73851d6ac128
·tlemaire on Sep 28 2018, 14:23.

Sep 26 2018

removed pltutils file
7075d3ab7f91
·tlemaire on Sep 26 2018, 17:26.

Sep 23 2018

major changes to the package (PointNeuron, SonicNeuron, ...)
2a334b211bff
·tlemaire on Sep 23 2018, 14:28.